pycom10g10270

Proline-rich protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0010868
Physical Location & Seq
Forward (+)
13562996 .. 13565600
2605 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1692 bp
ATGAAGATCTTCCAGAAGGGCTTCTGGCTTTGTGTGCTTTTTGTGAGCTTTTGCTACGCTGAACAGACAGTTGAGGTACTTGGGGTTGGAGAATGTACTGACTGTGATCAGAATAGCATAAAGACTAGCCGTGCCTTTTCAGGTCTTCGTGTAACAATTGATTGCAAACCAGAAAATGGACACTTCAAGACAAGAGGAGTTGGGAAGCTCAATGAACATGGAGAGTTCAAAGTCTCACTCCCTAAAAAGATTCTAAAAGAAGAAAACCAACTAAAAGAGGACTGCTATGCCCAACTCCACAGTGCATCAGCTGTCCCTTGTGCTGCCCATGACGGCCTAAAATCCACAAAAATAGTCTTCAAGTCTAAGGCAAGTGATGGGACACAAACCTTTGGAGTGGCTGGTGGAAAGCTCAAATTTTCACCTGTGACTTGCAATTCTGCCTTCTTTTGGCCTCACAAGAAGCACCCATTTTTTTCCAAGTTGCCACATTTGCCTAAGTTGCCACATTTCCCACCTAAGGTCTTCCCTCCAAAAGTACCAATCTTCAAGAAGCCTCTTCCTCCACCAATACCAATCTATAAGAAGCCTCTTCCACCACCAATCCCAGTACACAAGAAGCCTCTTCCACCACCAATCCCAGTATACAAGAAGCCACTTCCACCACCAGTCCCGATATACAAAAAGCCACTTCCCCCACTAGTCCCAATATACAAGAAGCCTCTTCCACCACCAGTCCCAATATACAAAAAGCCACTTCCCCCACTAGTCCCAATATACAAGAAGCCTCTTCCACCACCAATCCCAATATACAAAAAGCCATTTCCCCCACCAGTCCCCGTATACAAGAAGCCTCTTCCACCACCAGTCCCAGTATACAAAAAGCCACTTCCCCCACCAGTCCCCGTATACAAGAAGCCTCTTCCTCCACTTCCCCCACTAGTCCCAATATACAAGAAGCCTCTTCCACCACCGGTCCCAATATACAAAAAGCCACTTCCCCCACTGGTCCCAATATACAAGAAGCCTCTTCCACCACCAGTCCCAATATACAAAAAGCCATTTCCCCCACCAGTCCCCATATACAAGAAGCCTCTTCCACCACCAGTCCCAGTATACAAAAAGCCACTTCCCCCACCAGTCCCCGTATACAAGAAGCCTCTTCCTCCACTAATGCCAATCTATAAGAAACCTCTCCCTCCCCCCATCCCAGTGTACAAGAAGCCTCTTCCACCACCAATCCCAGTATACAAGAAGCCACTTCCACCACCAGTCCCAATATACAAAAAGCCAATTCCCCCACTAGTCCCAAAATACAAAAAGCCTCTTCCACCACCAGTCCCAATATACAAAAAGCCATTTCCCCCACCAGTCCCCGTATACAAGAAGCCTCTTCCACCACCAGTCCCAGTATACAAAAAGCCACTTCCCCCACCAGTTCCCATATACACGAAGCCATTTCCACCACCAGTCCCATTTTATAAGCCAAAGCCACATCCATTCTTTAAGCCTCTCCCTCCACTGCCAAAGATTCCTCATCCATTCTTTAAGCCTCTCCCTCCATTGCCAAAGGTTCCTCACCCATTCCTTAAGAAGCCACCAATCCCACCACTCCACCCAAAATATTACTTCCCCCACCCAAAGGTTGGCAAGTTCCCACCCCCGCCACCTTTGGTTCCTCAATATCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

564

Amino Acids

63.27

Weight (kDa)

10.12

Isoelectric Point (pI)

60.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 27 - 110 2e-11 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010868)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21140 AT4G38770
fragaria_vesca FvH4_2g01970
malus_domestica MD05G1116400.v1.1 MD10G1118600.v1.1
prunus_persica Prupe.8G160900_v2.0.a1
pyrus_communis pycom05g11060 pycom10g10270
rosa_chinensis RchiOBHm_Chr6g0245161
rosa_laevigata RLG00000015320
rosa_multiflora Rmu_sc0001288.1_g000002 Rmu_sc0015012.1_g000001 Rmu_ssc0000087.1_g000001
rosa_roxburghii Rroxscaffold_7G00215400
rosa_rugosa Rorug05G0512400
rosa_samantha Rh6AG027500 Rh6BG023600 Rh6CG022000 Rh6DG022100
rosa_wichuraiana Rw6G002320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1482
AccB7I CCANNNNNTGG 2 cut(s) 176, 1646
AccI GTMKAC 9 cut(s) 645, 843, 876, 909, 1116, 1149, 1248, 1380, 1413
AciI CCGC 1 cut(s) 1664
AcsI RAATTY 1 cut(s) 416
AfaI GTAC 5 cut(s) 78, 97, 540, 612, 1217
AfiI CCNNNNNNNGG 5 cut(s) 176, 450, 520, 1642, 1646
AflII CTTAAG 1 cut(s) 1589
AgeI ACCGGT 1 cut(s) 973
AgsI TTSAA 4 cut(s) 187, 229, 361, 550
AhlI ACTAGT 4 cut(s) 700, 766, 940, 1303
AluBI AGCT 4 cut(s) 48, 208, 311, 412
AluI AGCT 4 cut(s) 48, 208, 311, 412
Alw26I GTCTC 1 cut(s) 238
AoxI GGCC 2 cut(s) 334, 452
ApeKI GCWGC 1 cut(s) 323
ApoI RAATTY 1 cut(s) 416
AsiGI ACCGGT 1 cut(s) 973
Asp700I GAANNNNTTC 2 cut(s) 8, 20
AspS9I GGNCC 2 cut(s) 976, 1009
AsuHPI GGTGA 2 cut(s) 414, 1571
AvaII GGWCC 2 cut(s) 976, 1009
AxyI CCTNAGG 1 cut(s) 519
BbsI GAAGAC 3 cut(s) 137, 349, 517
BbvI GCAGC 1 cut(s) 310
BccI CCATC 2 cut(s) 371, 1214
BceAI ACGGC 2 cut(s) 114, 349
BclI TGATCA 1 cut(s) 106
BcoDI GTCTC 1 cut(s) 238
BcuI ACTAGT 4 cut(s) 700, 766, 940, 1303
BfaI CTAG 5 cut(s) 126, 701, 767, 941, 1304
BfrI CTTAAG 1 cut(s) 1589
BglII AGATCT 1 cut(s) 6
BisI GCNGC 1 cut(s) 324
BlsI GCNGC 1 cut(s) 325
Bme18I GGWCC 2 cut(s) 976, 1009
BmgT120I GGNCC 2 cut(s) 976, 1009
BmiI GGNNCC 4 cut(s) 978, 1011, 1575, 1677
BmrI ACTGGG 7 cut(s) 602, 635, 866, 1106, 1205, 1238, 1403
BmsI GCATC 1 cut(s) 314
BmuI ACTGGG 7 cut(s) 602, 635, 866, 1106, 1205, 1238, 1403
BpiI GAAGAC 3 cut(s) 137, 349, 517
BsaWI WCCGGW 1 cut(s) 973
Bsc4I CCNNNNNNNGG 5 cut(s) 176, 450, 520, 1642, 1646
Bse118I RCCGGY 1 cut(s) 973
Bse21I CCTNAGG 1 cut(s) 519
Bse3DI GCAATG 1 cut(s) 1562
BseGI GGATG 3 cut(s) 1206, 1495, 1537
BseLI CCNNNNNNNGG 5 cut(s) 176, 450, 520, 1642, 1646
BseMI GCAATG 1 cut(s) 1562
BseRI GAGGAG 1 cut(s) 210
BseXI GCAGC 1 cut(s) 310
BshFI GGCC 2 cut(s) 336, 454
BshTI ACCGGT 1 cut(s) 973
BsiSI CCGG 1 cut(s) 974
BslI CCNNNNNNNGG 5 cut(s) 176, 450, 520, 1642, 1646
BsmAI GTCTC 1 cut(s) 238
BsnI GGCC 2 cut(s) 336, 454
Bsp1407I TGTACA 1 cut(s) 1215
Bsp143I GATC 2 cut(s) 6, 106
BspACI CCGC 1 cut(s) 1664
BspANI GGCC 2 cut(s) 336, 454
BspLI GGNNCC 4 cut(s) 978, 1011, 1575, 1677
BspTI CTTAAG 1 cut(s) 1589
BsrDI GCAATG 1 cut(s) 1562
BsrFI RCCGGY 1 cut(s) 973
BsrGI TGTACA 1 cut(s) 1215
BssAI RCCGGY 1 cut(s) 973
BssMI GATC 2 cut(s) 6, 106
BssNAI GTATAC 9 cut(s) 646, 844, 877, 910, 1117, 1150, 1249, 1381, 1414
Bst1107I GTATAC 9 cut(s) 646, 844, 877, 910, 1117, 1150, 1249, 1381, 1414
Bst4CI ACNGT 3 cut(s) 70, 104, 302
BstAFI CTTAAG 1 cut(s) 1589
BstAUI TGTACA 1 cut(s) 1215
BstDEI CTNAG 4 cut(s) 366, 498, 519, 1689
BstF5I GGATG 3 cut(s) 1206, 1495, 1537
BstKTI GATC 2 cut(s) 9, 109
BstMAI GTCTC 1 cut(s) 238
BstMBI GATC 2 cut(s) 6, 106
BstMWI GCNNNNNNNGC 3 cut(s) 34, 493, 502
BstV1I GCAGC 1 cut(s) 310
BstV2I GAAGAC 3 cut(s) 137, 349, 517
BstX2I RGATCY 1 cut(s) 6
BstYI RGATCY 1 cut(s) 6
BstZ17I GTATAC 9 cut(s) 646, 844, 877, 910, 1117, 1150, 1249, 1381, 1414
Bsu36I CCTNAGG 1 cut(s) 519
BsuRI GGCC 2 cut(s) 336, 454
BtsCI GGATG 3 cut(s) 1206, 1495, 1537
BtsI GCAGTG 1 cut(s) 1520
BtsIMutI CAGTG 4 cut(s) 307, 1004, 1218, 1520
Cfr10I RCCGGY 1 cut(s) 973
Cfr13I GGNCC 2 cut(s) 976, 1009
Csp6I GTAC 5 cut(s) 77, 96, 539, 611, 1216
CspAI ACCGGT 1 cut(s) 973
CviAII CATG 2 cut(s) 218, 329
CviQI GTAC 5 cut(s) 77, 96, 539, 611, 1216
DdeI CTNAG 4 cut(s) 366, 498, 519, 1689
DpnI GATC 2 cut(s) 8, 108
DpnII GATC 2 cut(s) 6, 106
Eco47I GGWCC 2 cut(s) 976, 1009
Eco81I CCTNAGG 1 cut(s) 519
FaeI CATG 2 cut(s) 221, 332
FatI CATG 2 cut(s) 217, 328
FauI CCCGC 1 cut(s) 1671
FbaI TGATCA 1 cut(s) 106
FblI GTMKAC 9 cut(s) 645, 843, 876, 909, 1116, 1149, 1248, 1380, 1413
Fnu4HI GCNGC 1 cut(s) 324
FokI GGATG 3 cut(s) 1193, 1482, 1524
Fsp4HI GCNGC 1 cut(s) 324
FspBI CTAG 5 cut(s) 126, 701, 767, 941, 1304
GluI GCNGC 1 cut(s) 324
HaeIII GGCC 2 cut(s) 336, 454
HapII CCGG 1 cut(s) 974
Hin1II CATG 2 cut(s) 221, 332
HinfI GANTC 2 cut(s) 250, 1531
HpaII CCGG 1 cut(s) 974
HphI GGTGA 2 cut(s) 414, 1571
Hpy188I TCNGA 1 cut(s) 111
Hpy188III TCNNGA 4 cut(s) 13, 187, 550, 673
HpyAV CCTTC 2 cut(s) 10, 454
HpyCH4III ACNGT 3 cut(s) 70, 104, 302
HpyCH4V TGCA 3 cut(s) 165, 305, 435
HpyF10VI GCNNNNNNNGC 3 cut(s) 34, 493, 502
HpyF3I CTNAG 4 cut(s) 366, 498, 519, 1689
Hsp92II CATG 2 cut(s) 221, 332
Ksp22I TGATCA 1 cut(s) 106
Kzo9I GATC 2 cut(s) 6, 106
Lsp1109I GCAGC 1 cut(s) 310
LweI GCATC 1 cut(s) 314
MaeI CTAG 5 cut(s) 126, 701, 767, 941, 1304
MaeIII GTNAC 2 cut(s) 151, 427
MalI GATC 2 cut(s) 8, 108
MboI GATC 2 cut(s) 6, 106
MfeI CAATTG 1 cut(s) 156
MflI RGATCY 1 cut(s) 6
MluCI AATT 4 cut(s) 156, 416, 436, 1293
MmeI TCCRAC 1 cut(s) 67
MroXI GAANNNNTTC 2 cut(s) 8, 20
MseI TTAA 3 cut(s) 1506, 1548, 1590
MslI CAYNNNNRTG 1 cut(s) 1211
MspA1I CMGCKG 1 cut(s) 311
MspCI CTTAAG 1 cut(s) 1589
MspI CCGG 1 cut(s) 974
MunI CAATTG 1 cut(s) 156
MwoI GCNNNNNNNGC 3 cut(s) 34, 493, 502
NdeII GATC 2 cut(s) 6, 106
NlaIII CATG 2 cut(s) 221, 332
NlaIV GGNNCC 4 cut(s) 978, 1011, 1575, 1677
NmuCI GTSAC 1 cut(s) 427
PdmI GAANNNNTTC 2 cut(s) 8, 20
PfeI GAWTC 2 cut(s) 250, 1531
PflMI CCANNNNNTGG 2 cut(s) 176, 1646
PinAI ACCGGT 1 cut(s) 973
PkrI GCNGC 1 cut(s) 325
PsiI TTATAA 1 cut(s) 1482
PspN4I GGNNCC 4 cut(s) 978, 1011, 1575, 1677
PspPI GGNCC 2 cut(s) 976, 1009
PsuI RGATCY 1 cut(s) 6
PvuII CAGCTG 1 cut(s) 311
RsaI GTAC 5 cut(s) 78, 97, 540, 612, 1217
RsaNI GTAC 5 cut(s) 77, 96, 539, 611, 1216
RseI CAYNNNNRTG 1 cut(s) 1211
SaqAI TTAA 3 cut(s) 1506, 1548, 1590
SatI GCNGC 1 cut(s) 324
Sau3AI GATC 2 cut(s) 6, 106
Sau96I GGNCC 2 cut(s) 976, 1009
SfaNI GCATC 1 cut(s) 314
SinI GGWCC 2 cut(s) 976, 1009
SmiMI CAYNNNNRTG 1 cut(s) 1211
SmlI CTYRAG 1 cut(s) 1589
SmoI CTYRAG 1 cut(s) 1589
SpeI ACTAGT 4 cut(s) 700, 766, 940, 1303
Sse9I AATT 4 cut(s) 156, 416, 436, 1293
SsiI CCGC 1 cut(s) 1664
SspI AATATT 1 cut(s) 1625
SspMI CTAG 5 cut(s) 126, 701, 767, 941, 1304
TaaI ACNGT 3 cut(s) 70, 104, 302
TasI AATT 4 cut(s) 156, 416, 436, 1293
TatI WGTACW 3 cut(s) 95, 610, 1215
TfiI GAWTC 2 cut(s) 250, 1531
Tru1I TTAA 3 cut(s) 1506, 1548, 1590
Tru9I TTAA 3 cut(s) 1506, 1548, 1590
TscAI CASTG 4 cut(s) 307, 1011, 1218, 1527
TseFI GTSAC 1 cut(s) 427
TseI GCWGC 1 cut(s) 323
Tsp45I GTSAC 1 cut(s) 427
TspDTI ATGAA 2 cut(s) 17, 228
TspRI CASTG 4 cut(s) 307, 1011, 1218, 1527
Van91I CCANNNNNTGG 2 cut(s) 176, 1646
Vha464I CTTAAG 1 cut(s) 1589
VpaK11BI GGWCC 2 cut(s) 976, 1009
XapI RAATTY 1 cut(s) 416
XcmI CCANNNNNNNNNTGG 1 cut(s) 1643
XmiI GTMKAC 9 cut(s) 645, 843, 876, 909, 1116, 1149, 1248, 1380, 1413
XmnI GAANNNNTTC 2 cut(s) 8, 20
XspI CTAG 5 cut(s) 126, 701, 767, 941, 1304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.