Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0008638

Physical Location & Seq

Genomic Coordinates Reverse (-)

16005544 .. 16007403

Gene Structure 1860 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGAAAGAATGCAGTTTTGATGATGCAATCTTGGGATGCCATGGTGTCTTCCATTCTGCTTCCCCTGTATTGAAGAAACCTTCATCTGATCCAAAGACAGAAGTCTTGGAGCCAGCGATTGAGGGCACCTTGAACGTGTTGCGTTCGTGTAAGAAAAATCCATCTCTGAGGCGAGTGGTTCTCACTTCATCTTCTACAGCTCTGAGGAATAGACCCGATGAAGATTTAGCATCCAGTTTAAATCTGGATGAATCATCTTGGAGCTCTGTGGAACACTGCCAGAGACTTCAGCTCTGGTACCCTTTATCTAAAGTTCTAGCCGAGAAGGCAGCGGGGGATTTTTGCGAAGAAAATGGGATCGATTTAGTAACTGTTCTACCTGCGTGGGTGATTGGACCTAGTTTGTCACCTGATCTATGTTTGACTGCATCACGGGTACTCAGCCTGCTTAAAGGGGATACCGTATGGTATGGAAGAATGGGATATGTTCACATTGATGATGTTGCACTCTGTCACATCTTGGTTTATGAGCATGAAAGTGCTCATGGTCGATATCTTTGTAGCTCAACAGTTTTGGACAACGATGAGTTGGCTTCCTTATTATCCATGCGGTATCCTTTCTTACCTATTGCCAAAAGGTTGAAGCAAGTAAGCGGACCATATTATGAGTTGGACACGTCAAAGTTGCAGAGTCTAGGATTCAAATTCAAGACTATCCAGGAGATGTTTGATGATTGCATTGACTCTTTGGTGGAGCAAGGCCATCTTTCTGCACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Epimerase UFD1

Protein Analysis

260

Amino Acids

28.73

Weight (kDa)

5.36

Isoelectric Point (pI)

50.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Epimerase	PF01370	12 - 180	1.7e-09	NAD dependent epimerase/dehydratase family
NAD_binding_4	PF07993	12 - 134	2.8e-06	Male sterility protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35420
fragaria_vesca	FvH4_2g17230
malus_domestica	MD05G1145800.v1.1 MD05G1148800.v1.1 MD05G1148900.v1.1 MD10G1145200.v1.1 MD10G1145300.v1.1
prunus_persica	Prupe.8G183600_v2.0.a1 Prupe.8G183600_v2.0.a1
pyrus_communis	pycom05g14050 pycom10g12510 pycom10g12520
rosa_chinensis	RchiOBHm_Chr6g0281711
rosa_laevigata	RLG00000012944 RLG00000012947
rosa_multiflora	Rmu_sc0037975.1_g000001
rosa_roxburghii	Rroxscaffold_7G00186890
rosa_rugosa	Rorug06G0142700
rosa_samantha	Rh6AG255700 Rh6BG258800 Rh6CG257700 Rh6DG249800
rosa_wichuraiana	Rw6G022160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	388
Acc65I	GGTACC	1 cut(s)	297
AccB1I	GGYRCC	2 cut(s)	125, 297
AciI	CCGC	3 cut(s)	332, 610, 654
AclWI	GGATC	2 cut(s)	83, 365
AcsI	RAATTY	1 cut(s)	704
AcuI	CTGAAG	1 cut(s)	272
AfaI	GTAC	2 cut(s)	299, 438
AflIII	ACRYGT	2 cut(s)	135, 675
AgsI	TTSAA	5 cut(s)	73, 133, 643, 703, 709
AjiI	CACGTC	1 cut(s)	678
AjnI	CCWGG	1 cut(s)	717
AluBI	AGCT	4 cut(s)	200, 264, 292, 564
AluI	AGCT	4 cut(s)	200, 264, 292, 564
Alw21I	GWGCWC	2 cut(s)	266, 544
Alw26I	GTCTC	1 cut(s)	277
AlwI	GGATC	2 cut(s)	83, 365
AoxI	GGCC	1 cut(s)	760
ApeKI	GCWGC	1 cut(s)	329
ApoI	RAATTY	1 cut(s)	704
Asp718I	GGTACC	1 cut(s)	297
AspS9I	GGNCC	2 cut(s)	395, 656
AsuHPI	GGTGA	2 cut(s)	399, 400
AvaII	GGWCC	2 cut(s)	395, 656
BaeGI	GKGCMC	1 cut(s)	128
BanI	GGYRCC	2 cut(s)	125, 297
BanII	GRGCYC	1 cut(s)	266
BbsI	GAAGAC	1 cut(s)	40
Bbv12I	GWGCWC	2 cut(s)	266, 544
BbvI	GCAGC	1 cut(s)	341
BccI	CCATC	2 cut(s)	169, 771
BciT130I	CCWGG	1 cut(s)	719
BciVI	GTATCC	2 cut(s)	451, 624
BcoDI	GTCTC	1 cut(s)	277
BfaI	CTAG	4 cut(s)	317, 399, 695, 778
BfmI	CTRYAG	1 cut(s)	195
BfuAI	ACCTGC	1 cut(s)	388
BfuI	GTATCC	2 cut(s)	451, 624
BglI	GCCNNNNNGGC	1 cut(s)	326
BisI	GCNGC	1 cut(s)	330
BlsI	GCNGC	1 cut(s)	331
Bme1390I	CCNGG	1 cut(s)	719
Bme18I	GGWCC	2 cut(s)	395, 656
BmgBI	CACGTC	1 cut(s)	678
BmgT120I	GGNCC	2 cut(s)	395, 656
BmiI	GGNNCC	3 cut(s)	111, 127, 299
BmrFI	CCNGG	1 cut(s)	719
BmsI	GCATC	4 cut(s)	13, 26, 239, 437
BoxI	GACNNNNGTC	1 cut(s)	101
BpiI	GAAGAC	1 cut(s)	40
BplI	GAGNNNNNCTC	2 cut(s)	165, 197
Bsa29I	ATCGAT	1 cut(s)	360
BsaJI	CCNNGG	1 cut(s)	40
Bse1I	ACTGG	1 cut(s)	234
BseBI	CCWGG	1 cut(s)	719
BseCI	ATCGAT	1 cut(s)	360
BseDI	CCNNGG	1 cut(s)	40
BseGI	GGATG	3 cut(s)	41, 230, 253
BseMII	CTCAG	3 cut(s)	158, 194, 454
BseNI	ACTGG	1 cut(s)	234
BseSI	GKGCMC	1 cut(s)	128
BseXI	GCAGC	1 cut(s)	341
BsgI	GTGCAG	1 cut(s)	756
BshFI	GGCC	1 cut(s)	762
BshNI	GGYRCC	2 cut(s)	125, 297
BshVI	ATCGAT	1 cut(s)	360
BsiHKAI	GWGCWC	2 cut(s)	266, 544
BsmAI	GTCTC	1 cut(s)	277
BsmI	GAATGC	1 cut(s)	14
BsnI	GGCC	1 cut(s)	762
Bsp1286I	GDGCHC	3 cut(s)	128, 266, 544
Bsp143I	GATC	3 cut(s)	88, 357, 412
Bsp19I	CCATGG	1 cut(s)	40
BspACI	CCGC	3 cut(s)	332, 610, 654
BspANI	GGCC	1 cut(s)	762
BspCNI	CTCAG	3 cut(s)	159, 195, 453
BspDI	ATCGAT	1 cut(s)	360
BspLI	GGNNCC	3 cut(s)	111, 127, 299
BspMI	ACCTGC	1 cut(s)	388
BspPI	GGATC	2 cut(s)	83, 365
BspT107I	GGYRCC	2 cut(s)	125, 297
BsrI	ACTGG	1 cut(s)	234
BssECI	CCNNGG	1 cut(s)	40
BssMI	GATC	3 cut(s)	88, 357, 412
BssT1I	CCWWGG	1 cut(s)	40
Bst2UI	CCWGG	1 cut(s)	719
Bst4CI	ACNGT	3 cut(s)	373, 463, 571
BstC8I	GCNNGC	2 cut(s)	114, 446
BstDEI	CTNAG	3 cut(s)	167, 203, 440
BstDSI	CCRYGG	1 cut(s)	40
BstF5I	GGATG	3 cut(s)	41, 230, 253
BstKTI	GATC	3 cut(s)	91, 360, 415
BstMAI	GTCTC	1 cut(s)	277
BstMBI	GATC	3 cut(s)	88, 357, 412
BstMWI	GCNNNNNNNGC	1 cut(s)	326
BstNI	CCWGG	1 cut(s)	719
BstPAI	GACNNNNGTC	1 cut(s)	101
BstSCI	CCNGG	1 cut(s)	717
BstSFI	CTRYAG	1 cut(s)	195
BstSLI	GKGCMC	1 cut(s)	128
BstV1I	GCAGC	1 cut(s)	341
BstV2I	GAAGAC	1 cut(s)	40
Bsu15I	ATCGAT	1 cut(s)	360
BsuI	GTATCC	2 cut(s)	451, 624
BsuRI	GGCC	1 cut(s)	762
BsuTUI	ATCGAT	1 cut(s)	360
BtgI	CCRYGG	1 cut(s)	40
BtrI	CACGTC	1 cut(s)	678
BtsCI	GGATG	3 cut(s)	41, 230, 253
BtsI	GCAGTG	1 cut(s)	274
BtsIMutI	CAGTG	1 cut(s)	274
BveI	ACCTGC	1 cut(s)	388
Cac8I	GCNNGC	2 cut(s)	114, 446
Cfr13I	GGNCC	2 cut(s)	395, 656
ClaI	ATCGAT	1 cut(s)	360
Csp6I	GTAC	2 cut(s)	298, 437
CviAII	CATG	4 cut(s)	41, 533, 545, 607
CviJI	RGCY	9 cut(s)	112, 200, 264, 292, 320, 444, 564, 593, 762
CviKI_1	RGCY	9 cut(s)	112, 200, 264, 292, 320, 444, 564, 593, 762
CviQI	GTAC	2 cut(s)	298, 437
DdeI	CTNAG	3 cut(s)	167, 203, 440
DpnI	GATC	3 cut(s)	90, 359, 414
DpnII	GATC	3 cut(s)	88, 357, 412
DraI	TTTAAA	1 cut(s)	240
Ecl136II	GAGCTC	1 cut(s)	264
Eco130I	CCWWGG	1 cut(s)	40
Eco24I	GRGCYC	1 cut(s)	266
Eco32I	GATATC	1 cut(s)	554
Eco47I	GGWCC	2 cut(s)	395, 656
Eco53kI	GAGCTC	1 cut(s)	264
Eco57I	CTGAAG	1 cut(s)	272
EcoICRI	GAGCTC	1 cut(s)	264
EcoRII	CCWGG	1 cut(s)	717
EcoRV	GATATC	1 cut(s)	554
EcoT14I	CCWWGG	1 cut(s)	40
EcoT38I	GRGCYC	1 cut(s)	266
ErhI	CCWWGG	1 cut(s)	40
FaeI	CATG	4 cut(s)	44, 536, 548, 610
FalI	AAGNNNNNCTT	1 cut(s)	750
FatI	CATG	4 cut(s)	40, 532, 544, 606
FauI	CCCGC	1 cut(s)	325
Fnu4HI	GCNGC	1 cut(s)	330
FokI	GGATG	3 cut(s)	48, 217, 260
FriOI	GRGCYC	1 cut(s)	266
Fsp4HI	GCNGC	1 cut(s)	330
FspBI	CTAG	4 cut(s)	317, 399, 695, 778
GluI	GCNGC	1 cut(s)	330
HaeIII	GGCC	1 cut(s)	762
Hin1II	CATG	4 cut(s)	44, 536, 548, 610
HinfI	GANTC	4 cut(s)	251, 691, 699, 743
HphI	GGTGA	2 cut(s)	399, 400
Hpy166II	GTNNAC	1 cut(s)	490
Hpy188I	TCNGA	3 cut(s)	88, 168, 204
Hpy188III	TCNNGA	2 cut(s)	245, 709
Hpy8I	GTNNAC	1 cut(s)	490
HpyAV	CCTTC	2 cut(s)	90, 319
HpyCH4III	ACNGT	3 cut(s)	373, 463, 571
HpyCH4IV	ACGT	2 cut(s)	135, 677
HpyCH4V	TGCA	7 cut(s)	12, 26, 428, 506, 688, 738, 773
HpyF10VI	GCNNNNNNNGC	1 cut(s)	326
HpyF3I	CTNAG	3 cut(s)	167, 203, 440
HpySE526I	ACGT	2 cut(s)	135, 677
Hsp92II	CATG	4 cut(s)	44, 536, 548, 610
KpnI	GGTACC	1 cut(s)	301
Kzo9I	GATC	3 cut(s)	88, 357, 412
LmnI	GCTCC	3 cut(s)	109, 261, 754
Lsp1109I	GCAGC	1 cut(s)	341
LweI	GCATC	4 cut(s)	13, 26, 239, 437
MaeI	CTAG	4 cut(s)	317, 399, 695, 778
MaeII	ACGT	2 cut(s)	135, 677
MaeIII	GTNAC	3 cut(s)	367, 405, 512
MalI	GATC	3 cut(s)	90, 359, 414
MboI	GATC	3 cut(s)	88, 357, 412
MboII	GAAGA	6 cut(s)	40, 85, 183, 233, 359, 486
MhlI	GDGCHC	3 cut(s)	128, 266, 544
MluCI	AATT	1 cut(s)	704
MlyI	GAGTC	2 cut(s)	700, 737
MmeI	TCCRAC	1 cut(s)	651
MnlI	CCTC	3 cut(s)	115, 162, 198
MseI	TTAA	2 cut(s)	239, 450
MslI	CAYNNNNRTG	2 cut(s)	495, 537
MspA1I	CMGCKG	1 cut(s)	332
MspR9I	CCNGG	1 cut(s)	719
Mva1269I	GAATGC	1 cut(s)	14
MvaI	CCWGG	1 cut(s)	719
MwoI	GCNNNNNNNGC	1 cut(s)	326
NcoI	CCATGG	1 cut(s)	40
NdeII	GATC	3 cut(s)	88, 357, 412
NlaIII	CATG	4 cut(s)	44, 536, 548, 610
NlaIV	GGNNCC	3 cut(s)	111, 127, 299
NmeAIII	GCCGAG	1 cut(s)	346
NmuCI	GTSAC	2 cut(s)	405, 512
PctI	GAATGC	1 cut(s)	14
PfeI	GAWTC	2 cut(s)	251, 699
PfoI	TCCNGGA	1 cut(s)	717
PkrI	GCNGC	1 cut(s)	331
PleI	GAGTC	2 cut(s)	699, 737
PpsI	GAGTC	2 cut(s)	699, 737
PshAI	GACNNNNGTC	1 cut(s)	101
Psp124BI	GAGCTC	1 cut(s)	266
Psp6I	CCWGG	1 cut(s)	717
PspGI	CCWGG	1 cut(s)	717
PspN4I	GGNNCC	3 cut(s)	111, 127, 299
PspPI	GGNCC	2 cut(s)	395, 656
RsaI	GTAC	2 cut(s)	299, 438
RsaNI	GTAC	2 cut(s)	298, 437
RseI	CAYNNNNRTG	2 cut(s)	495, 537
SacI	GAGCTC	1 cut(s)	266
SaqAI	TTAA	2 cut(s)	239, 450
SatI	GCNGC	1 cut(s)	330
Sau3AI	GATC	3 cut(s)	88, 357, 412
Sau96I	GGNCC	2 cut(s)	395, 656
SchI	GAGTC	2 cut(s)	700, 737
ScrFI	CCNGG	1 cut(s)	719
SduI	GDGCHC	3 cut(s)	128, 266, 544
SfaNI	GCATC	4 cut(s)	13, 26, 239, 437
SfcI	CTRYAG	1 cut(s)	195
SinI	GGWCC	2 cut(s)	395, 656
SmiMI	CAYNNNNRTG	2 cut(s)	495, 537
Sse9I	AATT	1 cut(s)	704
SsiI	CCGC	3 cut(s)	332, 610, 654
SspMI	CTAG	4 cut(s)	317, 399, 695, 778
SstI	GAGCTC	1 cut(s)	266
StyD4I	CCNGG	1 cut(s)	717
StyI	CCWWGG	1 cut(s)	40
TaaI	ACNGT	3 cut(s)	373, 463, 571
TaiI	ACGT	2 cut(s)	138, 680
TaqI	TCGA	2 cut(s)	360, 550
TasI	AATT	1 cut(s)	704
TfiI	GAWTC	2 cut(s)	251, 699
Tru1I	TTAA	2 cut(s)	239, 450
Tru9I	TTAA	2 cut(s)	239, 450
TscAI	CASTG	1 cut(s)	281
TseFI	GTSAC	2 cut(s)	405, 512
TseI	GCWGC	1 cut(s)	329
Tsp45I	GTSAC	2 cut(s)	405, 512
TspDTI	ATGAA	6 cut(s)	17, 72, 177, 234, 264, 549
TspRI	CASTG	1 cut(s)	281
VpaK11BI	GGWCC	2 cut(s)	395, 656
XapI	RAATTY	1 cut(s)	704
XcmI	CCANNNNNNNNNTGG	1 cut(s)	241
XspI	CTAG	4 cut(s)	317, 399, 695, 778

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.