Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0007274

Physical Location & Seq

Genomic Coordinates Reverse (-)

17566528 .. 17567891

Gene Structure 1364 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g14180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGACCGCGGCGGTGACAAGCATCAGCAGCAACAGCAACCACAGCTATCCTTGGCTAAGAGTTCGCGGCAGCAGCGATACAATGAATGGATTTTTCGGGATGTTCCAAGCGATATTACAATACAAGTGAATGGAGGGGCTTTTTCATTACATAAGTTCCCTCTTGTCTCTCGAAGTGGGAGAATCCGGAGGTTGGTTGCTGAACACAGGGATTCTGATATCTCAAGAGTGGAGCTTCTTAATCTACCGGGAGGTGCAGAATCATTTGAGTTGGCAGCAAAGTTCTGTTATGGTATTAACTTCGAAATCACATCTTCAAACGTTGCTCAGCTGTGTTGTGCTTCTGATTACCTCGAAATGACTGAAGAGTTCTCAAAAGATAATCTTGGTTCGCGCGCTGAAGAATACCTTGAAAGCGTTGTTTGCAAAAATCTTGAAATGTGTGTTGAGGTTCTGCAGCAATGTGAGGGTTTACTACCTCTAGCTGATGAGCTGAGAATAGTTAGCCGTTGCATAGATGCAATAGCCTCAAAGGCTTGTGTGGAGCAAATTGCTTCTAGCTTTTCACGCTTGGAGTATAGCAGCTCGGGGAGACTTCACATGAACAGGCAAGCTAAATCTGATGGGGACTGGTGGATAGAAGATCTTTCGGTTATTCGAGTTGACTTGTACGAAAGAGTCATAACAGCCATGAAGTGCCGCGGAGTTCGCCCTGAGAGTATTGGTGCATCTCTTGTGAACTATGCGCAGAAGGAGTTGACAAAAAAGTCCAGCTTATGGAATCCGTCTGGCCAGACAAAAGTTGACGTAAATTCAGCTTCAACTGTGCATGAAAAACTCGTGGTTGAGACAATTGTTGGCCTCCTGCCCGTTGAGAAACTTGTTATTCCAATCAATTTCCTATTTGGGCTTTTGCGAAGTGCTGTAATGCTTGATTGCACAATTGCTTGCAGACTTGATCGATCTGGAGAGGAGGATAGGGTCCCAGCTGGATATTGCTACTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

336

Amino Acids

37.51

Weight (kDa)

5.57

Isoelectric Point (pI)

44.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	36 - 122	6.7e-07	BTB/POZ domain
NPH3	PF03000	210 - 319	2.7e-27	NPH3 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007274)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48800
fragaria_vesca	FvH4_2g19060 FvH4_2g19060 FvH4_2g19060 FvH4_2g19060
malus_domestica	MD05G1175400.v1.1 MD10G1164500.v1.1
prunus_persica	Prupe.8G203100_v2.0.a1
pyrus_communis	pycom05g16220 pycom10g14180
rosa_chinensis	RchiOBHm_Chr6g0284881
rosa_laevigata	RLG00000012705
rosa_multiflora	Rmu_co8481861.1_g000001 Rmu_sc0000686.1_g000019
rosa_roxburghii	Rroxscaffold_7G00184270
rosa_rugosa	Rorug06G0167700 Rorug06G0167800 Rorug06G0167900 Rorug06G0167900 Rorug06G0168000
rosa_samantha	Rh6AG280300 Rh6BG280600 Rh6CG282600 Rh6DG275700
rosa_wichuraiana	Rw6G024090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	766
Acc16I	TGCGCA	1 cut(s)	747
AccB7I	CCANNNNNTGG	1 cut(s)	777
AccII	CGCG	5 cut(s)	9, 67, 394, 396, 702
AccIII	TCCGGA	1 cut(s)	186
AciI	CCGC	6 cut(s)	7, 9, 12, 67, 700, 702
AclI	AACGTT	1 cut(s)	321
AcoI	YGGCCR	1 cut(s)	790
AcsI	RAATTY	1 cut(s)	811
AcuI	CTGAAG	2 cut(s)	384, 420
AfaI	GTAC	1 cut(s)	671
AfiI	CCNNNNNNNGG	2 cut(s)	193, 777
AgsI	TTSAA	4 cut(s)	318, 413, 437, 822
Alw26I	GTCTC	3 cut(s)	172, 586, 842
Ama87I	CYCGRG	1 cut(s)	586
Aor13HI	TCCGGA	1 cut(s)	186
AoxI	GGCC	2 cut(s)	790, 859
ApeKI	GCWGC	6 cut(s)	28, 70, 73, 275, 457, 582
ApoI	RAATTY	1 cut(s)	811
AspLEI	GCGC	3 cut(s)	396, 398, 748
AspS9I	GGNCC	2 cut(s)	4, 982
AsuC2I	CCSGG	1 cut(s)	249
AsuHPI	GGTGA	1 cut(s)	26
AsuII	TTCGAA	1 cut(s)	303
AvaI	CYCGRG	1 cut(s)	586
AvaII	GGWCC	2 cut(s)	4, 982
BalI	TGGCCA	1 cut(s)	792
BauI	CACGAG	1 cut(s)	839
BbvI	GCAGC	6 cut(s)	40, 82, 85, 287, 469, 594
BccI	CCATC	1 cut(s)	617
BceAI	ACGGC	1 cut(s)	492
BcnI	CCSGG	1 cut(s)	249
BcoDI	GTCTC	3 cut(s)	172, 586, 842
BfaI	CTAG	2 cut(s)	482, 558
BfmI	CTRYAG	1 cut(s)	455
BglI	GCCNNNNNGGC	1 cut(s)	533
BglII	AGATCT	1 cut(s)	643
BisI	GCNGC	9 cut(s)	10, 29, 68, 71, 74, 276, 458, 583, 700
BlpI	GCTNAGC	1 cut(s)	327
BlsI	GCNGC	9 cut(s)	11, 30, 69, 72, 75, 277, 459, 584, 701
Bme1390I	CCNGG	1 cut(s)	249
Bme18I	GGWCC	2 cut(s)	4, 982
BmeT110I	CYCGRG	1 cut(s)	586
BmgT120I	GGNCC	2 cut(s)	4, 982
BmiI	GGNNCC	2 cut(s)	983, 984
BmrFI	CCNGG	1 cut(s)	249
BmsI	GCATC	3 cut(s)	31, 508, 737
BpmI	CTGGAG	1 cut(s)	987
Bpu1102I	GCTNAGC	1 cut(s)	327
Bpu14I	TTCGAA	1 cut(s)	303
BpuEI	CTTGAG	1 cut(s)	208
BpuMI	CCSGG	1 cut(s)	249
Bsa29I	ATCGAT	1 cut(s)	961
BsaJI	CCNNGG	3 cut(s)	7, 51, 700
BsaWI	WCCGGW	1 cut(s)	186
Bsc4I	CCNNNNNNNGG	2 cut(s)	193, 777
Bse1I	ACTGG	1 cut(s)	635
Bse3DI	GCAATG	1 cut(s)	467
BseAI	TCCGGA	1 cut(s)	186
BseCI	ATCGAT	1 cut(s)	961
BseDI	CCNNGG	3 cut(s)	7, 51, 700
BseGI	GGATG	1 cut(s)	106
BseLI	CCNNNNNNNGG	2 cut(s)	193, 777
BseMI	GCAATG	1 cut(s)	467
BseMII	CTCAG	3 cut(s)	341, 485, 705
BseNI	ACTGG	1 cut(s)	635
BsePI	GCGCGC	1 cut(s)	394
BseRI	GAGGAG	1 cut(s)	986
BseXI	GCAGC	6 cut(s)	40, 82, 85, 287, 469, 594
BseYI	CCCAGC	1 cut(s)	985
BsgI	GTGCAG	1 cut(s)	276
Bsh1236I	CGCG	5 cut(s)	9, 67, 394, 396, 702
BshFI	GGCC	2 cut(s)	792, 861
BshVI	ATCGAT	1 cut(s)	961
BsiHKCI	CYCGRG	1 cut(s)	586
BsiSI	CCGG	2 cut(s)	187, 248
BslFI	GGGAC	2 cut(s)	641, 968
BslI	CCNNNNNNNGG	2 cut(s)	193, 777
BsmAI	GTCTC	3 cut(s)	172, 586, 842
BsmFI	GGGAC	2 cut(s)	641, 968
BsnI	GGCC	2 cut(s)	792, 861
BsoBI	CYCGRG	1 cut(s)	586
Bsp119I	TTCGAA	1 cut(s)	303
Bsp13I	TCCGGA	1 cut(s)	186
Bsp143I	GATC	3 cut(s)	643, 958, 962
Bsp1720I	GCTNAGC	1 cut(s)	327
BspACI	CCGC	6 cut(s)	7, 9, 12, 67, 700, 702
BspANI	GGCC	2 cut(s)	792, 861
BspCNI	CTCAG	3 cut(s)	340, 486, 706
BspDI	ATCGAT	1 cut(s)	961
BspEI	TCCGGA	1 cut(s)	186
BspFNI	CGCG	5 cut(s)	9, 67, 394, 396, 702
BspLI	GGNNCC	2 cut(s)	983, 984
BspMAI	CTGCAG	1 cut(s)	459
BspT104I	TTCGAA	1 cut(s)	303
BsrDI	GCAATG	1 cut(s)	467
BsrI	ACTGG	1 cut(s)	635
BssECI	CCNNGG	3 cut(s)	7, 51, 700
BssHII	GCGCGC	1 cut(s)	394
BssMI	GATC	3 cut(s)	643, 958, 962
BssSI	CACGAG	1 cut(s)	839
BssT1I	CCWWGG	1 cut(s)	51
Bst2BI	CACGAG	1 cut(s)	839
Bst4CI	ACNGT	1 cut(s)	826
Bst6I	CTCTTC	1 cut(s)	360
BstBI	TTCGAA	1 cut(s)	303
BstC8I	GCNNGC	3 cut(s)	396, 612, 949
BstDEI	CTNAG	4 cut(s)	57, 327, 494, 714
BstDSI	CCRYGG	2 cut(s)	7, 700
BstF5I	GGATG	1 cut(s)	106
BstFNI	CGCG	5 cut(s)	9, 67, 394, 396, 702
BstHHI	GCGC	3 cut(s)	396, 398, 748
BstKTI	GATC	3 cut(s)	646, 961, 965
BstMAI	GTCTC	3 cut(s)	172, 586, 842
BstMBI	GATC	3 cut(s)	643, 958, 962
BstMWI	GCNNNNNNNGC	8 cut(s)	28, 34, 43, 73, 423, 533, 567, 708
BstSCI	CCNGG	1 cut(s)	247
BstSFI	CTRYAG	1 cut(s)	455
BstUI	CGCG	5 cut(s)	9, 67, 394, 396, 702
BstV1I	GCAGC	6 cut(s)	40, 82, 85, 287, 469, 594
BstX2I	RGATCY	1 cut(s)	643
BstYI	RGATCY	1 cut(s)	643
Bsu15I	ATCGAT	1 cut(s)	961
BsuRI	GGCC	2 cut(s)	792, 861
BsuTUI	ATCGAT	1 cut(s)	961
BtgI	CCRYGG	2 cut(s)	7, 700
BtsCI	GGATG	1 cut(s)	106
Cac8I	GCNNGC	3 cut(s)	396, 612, 949
CfoI	GCGC	3 cut(s)	396, 398, 748
Cfr13I	GGNCC	2 cut(s)	4, 982
Cfr42I	CCGCGG	2 cut(s)	10, 703
ClaI	ATCGAT	1 cut(s)	961
Csp6I	GTAC	1 cut(s)	670
CviAII	CATG	3 cut(s)	601, 691, 830
CviQI	GTAC	1 cut(s)	670
DdeI	CTNAG	4 cut(s)	57, 327, 494, 714
DpnI	GATC	3 cut(s)	645, 960, 964
DpnII	GATC	3 cut(s)	643, 958, 962
DrdI	GACNNNNNNGTC	1 cut(s)	766
DseDI	GACNNNNNNGTC	1 cut(s)	766
EaeI	YGGCCR	1 cut(s)	790
Eam1104I	CTCTTC	1 cut(s)	360
EarI	CTCTTC	1 cut(s)	360
Eco130I	CCWWGG	1 cut(s)	51
Eco32I	GATATC	1 cut(s)	220
Eco47I	GGWCC	2 cut(s)	4, 982
Eco57I	CTGAAG	2 cut(s)	384, 420
Eco88I	CYCGRG	1 cut(s)	586
EcoO109I	RGGNCCY	1 cut(s)	982
EcoRV	GATATC	1 cut(s)	220
EcoT14I	CCWWGG	1 cut(s)	51
ErhI	CCWWGG	1 cut(s)	51
FaeI	CATG	3 cut(s)	604, 694, 833
FalI	AAGNNNNNCTT	6 cut(s)	369, 401, 393, 425, 758, 790
FaqI	GGGAC	2 cut(s)	641, 968
FatI	CATG	3 cut(s)	600, 690, 829
Fnu4HI	GCNGC	9 cut(s)	10, 29, 68, 71, 74, 276, 458, 583, 700
FokI	GGATG	1 cut(s)	113
Fsp4HI	GCNGC	9 cut(s)	10, 29, 68, 71, 74, 276, 458, 583, 700
FspBI	CTAG	2 cut(s)	482, 558
FspI	TGCGCA	1 cut(s)	747
GlaI	GCGC	3 cut(s)	395, 397, 747
GluI	GCNGC	9 cut(s)	10, 29, 68, 71, 74, 276, 458, 583, 700
GsaI	CCCAGC	1 cut(s)	989
GsuI	CTGGAG	1 cut(s)	987
HaeIII	GGCC	2 cut(s)	792, 861
HapII	CCGG	2 cut(s)	187, 248
HhaI	GCGC	3 cut(s)	396, 398, 748
Hin1II	CATG	3 cut(s)	604, 694, 833
Hin6I	GCGC	3 cut(s)	394, 396, 746
HinP1I	GCGC	3 cut(s)	394, 396, 746
HincII	GTYRAC	3 cut(s)	664, 759, 805
HindII	GTYRAC	3 cut(s)	664, 759, 805
HinfI	GANTC	5 cut(s)	183, 212, 260, 678, 781
HpaII	CCGG	2 cut(s)	187, 248
HphI	GGTGA	1 cut(s)	26
Hpy166II	GTNNAC	5 cut(s)	473, 664, 739, 759, 805
Hpy188I	TCNGA	3 cut(s)	217, 346, 622
Hpy188III	TCNNGA	7 cut(s)	98, 171, 187, 225, 434, 966, 1005
Hpy8I	GTNNAC	5 cut(s)	473, 664, 739, 759, 805
HpyAV	CCTTC	1 cut(s)	745
HpyCH4III	ACNGT	1 cut(s)	826
HpyCH4IV	ACGT	2 cut(s)	321, 807
HpyCH4V	TGCA	9 cut(s)	257, 426, 457, 513, 521, 728, 829, 939, 951
HpyF10VI	GCNNNNNNNGC	8 cut(s)	28, 34, 43, 73, 423, 533, 567, 708
HpyF3I	CTNAG	4 cut(s)	57, 327, 494, 714
HpySE526I	ACGT	2 cut(s)	321, 807
Hsp92II	CATG	3 cut(s)	604, 694, 833
HspAI	GCGC	3 cut(s)	394, 396, 746
KflI	GGGWCCC	1 cut(s)	982
Kpn2I	TCCGGA	1 cut(s)	186
KspI	CCGCGG	2 cut(s)	10, 703
Kzo9I	GATC	3 cut(s)	643, 958, 962
LmnI	GCTCC	2 cut(s)	232, 544
Lsp1109I	GCAGC	6 cut(s)	40, 82, 85, 287, 469, 594
LweI	GCATC	3 cut(s)	31, 508, 737
MaeI	CTAG	2 cut(s)	482, 558
MaeII	ACGT	2 cut(s)	321, 807
MaeIII	GTNAC	1 cut(s)	14
MalI	GATC	3 cut(s)	645, 960, 964
MboI	GATC	3 cut(s)	643, 958, 962
MboII	GAAGA	4 cut(s)	306, 377, 413, 653
MfeI	CAATTG	2 cut(s)	852, 942
MflI	RGATCY	1 cut(s)	643
MlsI	TGGCCA	1 cut(s)	792
MluCI	AATT	5 cut(s)	549, 811, 852, 895, 942
MluNI	TGGCCA	1 cut(s)	792
MlyI	GAGTC	1 cut(s)	687
Mox20I	TGGCCA	1 cut(s)	792
MroI	TCCGGA	1 cut(s)	186
MscI	TGGCCA	1 cut(s)	792
MseI	TTAA	2 cut(s)	240, 297
Msp20I	TGGCCA	1 cut(s)	792
MspA1I	CMGCKG	4 cut(s)	9, 331, 702, 989
MspI	CCGG	2 cut(s)	187, 248
MspR9I	CCNGG	1 cut(s)	249
MunI	CAATTG	2 cut(s)	852, 942
MvnI	CGCG	5 cut(s)	9, 67, 394, 396, 702
MwoI	GCNNNNNNNGC	8 cut(s)	28, 34, 43, 73, 423, 533, 567, 708
NciI	CCSGG	1 cut(s)	249
NdeII	GATC	3 cut(s)	643, 958, 962
NlaIII	CATG	3 cut(s)	604, 694, 833
NlaIV	GGNNCC	2 cut(s)	983, 984
NmuCI	GTSAC	1 cut(s)	14
NsbI	TGCGCA	1 cut(s)	747
NspV	TTCGAA	1 cut(s)	303
PauI	GCGCGC	1 cut(s)	394
PfeI	GAWTC	4 cut(s)	183, 212, 260, 781
PflMI	CCANNNNNTGG	1 cut(s)	777
PkrI	GCNGC	9 cut(s)	11, 30, 69, 72, 75, 277, 459, 584, 701
PleI	GAGTC	1 cut(s)	686
PpsI	GAGTC	1 cut(s)	686
PpuMI	RGGWCCY	1 cut(s)	982
Psp1406I	AACGTT	1 cut(s)	321
Psp5II	RGGWCCY	1 cut(s)	982
PspFI	CCCAGC	1 cut(s)	985
PspN4I	GGNNCC	2 cut(s)	983, 984
PspPI	GGNCC	2 cut(s)	4, 982
PspPPI	RGGWCCY	1 cut(s)	982
PstI	CTGCAG	1 cut(s)	459
PsuI	RGATCY	1 cut(s)	643
PteI	GCGCGC	1 cut(s)	394
PvuII	CAGCTG	2 cut(s)	331, 989
RsaI	GTAC	1 cut(s)	671
RsaNI	GTAC	1 cut(s)	670
SacII	CCGCGG	2 cut(s)	10, 703
SaqAI	TTAA	2 cut(s)	240, 297
SatI	GCNGC	9 cut(s)	10, 29, 68, 71, 74, 276, 458, 583, 700
Sau3AI	GATC	3 cut(s)	643, 958, 962
Sau96I	GGNCC	2 cut(s)	4, 982
SchI	GAGTC	1 cut(s)	687
ScrFI	CCNGG	1 cut(s)	249
SfaNI	GCATC	3 cut(s)	31, 508, 737
SfcI	CTRYAG	1 cut(s)	455
Sfr303I	CCGCGG	2 cut(s)	10, 703
SfuI	TTCGAA	1 cut(s)	303
SgrBI	CCGCGG	2 cut(s)	10, 703
SinI	GGWCC	2 cut(s)	4, 982
SmlI	CTYRAG	1 cut(s)	223
SmoI	CTYRAG	1 cut(s)	223
Sse9I	AATT	5 cut(s)	549, 811, 852, 895, 942
SsiI	CCGC	6 cut(s)	7, 9, 12, 67, 700, 702
SspMI	CTAG	2 cut(s)	482, 558
StyD4I	CCNGG	1 cut(s)	247
StyI	CCWWGG	1 cut(s)	51
TaaI	ACNGT	1 cut(s)	826
TaiI	ACGT	2 cut(s)	324, 810
TaqI	TCGA	5 cut(s)	172, 303, 354, 658, 961
TasI	AATT	5 cut(s)	549, 811, 852, 895, 942
TauI	GCSGC	3 cut(s)	12, 70, 702
TfiI	GAWTC	4 cut(s)	183, 212, 260, 781
Tru1I	TTAA	2 cut(s)	240, 297
Tru9I	TTAA	2 cut(s)	240, 297
TseFI	GTSAC	1 cut(s)	14
TseI	GCWGC	6 cut(s)	28, 70, 73, 275, 457, 582
Tsp45I	GTSAC	1 cut(s)	14
TspDTI	ATGAA	5 cut(s)	99, 135, 617, 707, 846
TspGWI	ACGGA	1 cut(s)	774
Van91I	CCANNNNNTGG	1 cut(s)	777
VpaK11BI	GGWCC	2 cut(s)	4, 982
XapI	RAATTY	1 cut(s)	811
XspI	CTAG	2 cut(s)	482, 558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.