Rorug06G0168000

Belongs to the NPH3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0007274
Physical Location & Seq
Reverse (-)
24665943 .. 24715706
49764 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0168000.1

Sequence Viewer

Length: 540 bp
ATGGGCTTACTGGGTCTCGTTGGATTTGCGCTCCAATGCTTTGATGTTCTTGCATGGCCTCTCTTTGCTCTGGTCTATCCTCTGTATTCTTCCGTTAGAGCAATCGAGACAAATTCCATTACAGATACTCAGAAGATAAATACGTATTGGGTCGTCTTCTCATTGATCTTGCTATTTGAACATGCTTTTATGAAGCTCCTTGAATGGTTCCTGCCCTGGCCATACATTAGGCTACTGATTGTCTTCTTTTTGGTGATGCCACATTTTGATGGTGCCTTATATGTCTATAAACACCTTTTCTGTCCATGCCTCTCCATGGATACCCAAATGGTTATCAACTTGTTCAACAAGCGGAAGGAGTCCCTTGTGAGAGATAACTTTCTCTCTGAGGTGGAGAGATATGTAAAGGAGAATGGACCTGAAAGTTTGGAAAAATTTATTCCTTGCAAGTCAACAAGGACAAATCTCGATGTAAAAGAGTTCAATGCAGTTTCATCCATGGATAATGAAGCGGTAGAATGCATAAGATCCCTTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB NPH3

Protein Analysis

179

Amino Acids

20.9

Weight (kDa)

5.62

Isoelectric Point (pI)

22.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TB2_DP1_HVA22 PF03134 27 - 102 1.5e-18 TB2/DP1, HVA22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 272
AciI CCGC 2 cut(s) 352, 512
AclWI GGATC 1 cut(s) 522
AcoI YGGCCR 1 cut(s) 218
AcsI RAATTY 2 cut(s) 112, 434
AfiI CCNNNNNNNGG 1 cut(s) 316
AgsI TTSAA 4 cut(s) 179, 203, 346, 484
AjnI CCWGG 1 cut(s) 215
AluBI AGCT 1 cut(s) 196
AluI AGCT 1 cut(s) 196
Alw26I GTCTC 2 cut(s) 20, 101
AlwI GGATC 1 cut(s) 522
AoxI GGCC 2 cut(s) 56, 218
ApoI RAATTY 2 cut(s) 112, 434
AspLEI GCGC 1 cut(s) 31
AspS9I GGNCC 1 cut(s) 416
AsuHPI GGTGA 1 cut(s) 265
AvaII GGWCC 1 cut(s) 416
BalI TGGCCA 1 cut(s) 220
BanI GGYRCC 1 cut(s) 272
BbsI GAAGAC 2 cut(s) 148, 235
BccI CCATC 1 cut(s) 263
BciT130I CCWGG 1 cut(s) 217
BciVI GTATCC 1 cut(s) 313
BcoDI GTCTC 2 cut(s) 20, 101
BfuI GTATCC 1 cut(s) 313
Bme1390I CCNGG 1 cut(s) 217
Bme18I GGWCC 1 cut(s) 416
BmgT120I GGNCC 1 cut(s) 416
BmiI GGNNCC 2 cut(s) 209, 274
BmrFI CCNGG 1 cut(s) 217
BmrI ACTGGG 1 cut(s) 20
BmsI GCATC 1 cut(s) 246
BmuI ACTGGG 1 cut(s) 20
BpiI GAAGAC 2 cut(s) 148, 235
BsaAI YACGTR 1 cut(s) 144
BsaI GGTCTC 1 cut(s) 20
BsaJI CCNNGG 3 cut(s) 215, 315, 498
Bsc4I CCNNNNNNNGG 1 cut(s) 316
Bse1I ACTGG 1 cut(s) 15
BseBI CCWGG 1 cut(s) 217
BseDI CCNNGG 3 cut(s) 215, 315, 498
BseGI GGATG 1 cut(s) 494
BseLI CCNNNNNNNGG 1 cut(s) 316
BseMII CTCAG 2 cut(s) 143, 378
BseNI ACTGG 1 cut(s) 15
BshFI GGCC 2 cut(s) 58, 220
BshNI GGYRCC 1 cut(s) 272
BslFI GGGAC 1 cut(s) 346
BslI CCNNNNNNNGG 1 cut(s) 316
BsmAI GTCTC 2 cut(s) 20, 101
BsmFI GGGAC 1 cut(s) 346
BsmI GAATGC 1 cut(s) 524
BsnI GGCC 2 cut(s) 58, 220
Bso31I GGTCTC 1 cut(s) 20
Bsp143I GATC 2 cut(s) 165, 527
Bsp19I CCATGG 2 cut(s) 315, 498
BspACI CCGC 2 cut(s) 352, 512
BspANI GGCC 2 cut(s) 58, 220
BspCNI CTCAG 2 cut(s) 142, 379
BspLI GGNNCC 2 cut(s) 209, 274
BspPI GGATC 1 cut(s) 522
BspT107I GGYRCC 1 cut(s) 272
BspTNI GGTCTC 1 cut(s) 20
BsrI ACTGG 1 cut(s) 15
BssECI CCNNGG 3 cut(s) 215, 315, 498
BssMI GATC 2 cut(s) 165, 527
BssT1I CCWWGG 2 cut(s) 315, 498
Bst2UI CCWGG 1 cut(s) 217
BstBAI YACGTR 1 cut(s) 144
BstDEI CTNAG 2 cut(s) 129, 387
BstDSI CCRYGG 2 cut(s) 315, 498
BstF5I GGATG 1 cut(s) 494
BstHHI GCGC 1 cut(s) 31
BstKTI GATC 2 cut(s) 168, 530
BstMAI GTCTC 2 cut(s) 20, 101
BstMBI GATC 2 cut(s) 165, 527
BstNI CCWGG 1 cut(s) 217
BstNSI RCATGY 1 cut(s) 185
BstSCI CCNGG 1 cut(s) 215
BstSNI TACGTA 1 cut(s) 144
BstV2I GAAGAC 2 cut(s) 148, 235
BstX2I RGATCY 1 cut(s) 527
BstYI RGATCY 1 cut(s) 527
BsuI GTATCC 1 cut(s) 313
BsuRI GGCC 2 cut(s) 58, 220
BtgI CCRYGG 2 cut(s) 315, 498
BtsCI GGATG 1 cut(s) 494
CfoI GCGC 1 cut(s) 31
Cfr13I GGNCC 1 cut(s) 416
CviAII CATG 5 cut(s) 54, 182, 306, 316, 499
CviJI RGCY 5 cut(s) 6, 58, 196, 220, 232
CviKI_1 RGCY 5 cut(s) 6, 58, 196, 220, 232
DdeI CTNAG 2 cut(s) 129, 387
DpnI GATC 2 cut(s) 167, 529
DpnII GATC 2 cut(s) 165, 527
EaeI YGGCCR 1 cut(s) 218
Eco105I TACGTA 1 cut(s) 144
Eco130I CCWWGG 2 cut(s) 315, 498
Eco31I GGTCTC 1 cut(s) 20
Eco47I GGWCC 1 cut(s) 416
EcoRII CCWGG 1 cut(s) 215
EcoT14I CCWWGG 2 cut(s) 315, 498
EcoT22I ATGCAT 1 cut(s) 524
ErhI CCWWGG 2 cut(s) 315, 498
FaeI CATG 5 cut(s) 57, 185, 309, 319, 502
FaqI GGGAC 1 cut(s) 346
FatI CATG 5 cut(s) 53, 181, 305, 315, 498
FokI GGATG 1 cut(s) 481
GlaI GCGC 1 cut(s) 30
HaeIII GGCC 2 cut(s) 58, 220
HhaI GCGC 1 cut(s) 31
Hin1II CATG 5 cut(s) 57, 185, 309, 319, 502
Hin6I GCGC 1 cut(s) 29
HinP1I GCGC 1 cut(s) 29
HincII GTYRAC 1 cut(s) 453
HindII GTYRAC 1 cut(s) 453
HinfI GANTC 1 cut(s) 359
HphI GGTGA 1 cut(s) 265
Hpy166II GTNNAC 1 cut(s) 453
Hpy188I TCNGA 2 cut(s) 132, 388
Hpy188III TCNNGA 2 cut(s) 106, 467
Hpy8I GTNNAC 1 cut(s) 453
HpyAV CCTTC 1 cut(s) 349
HpyCH4IV ACGT 1 cut(s) 143
HpyCH4V TGCA 4 cut(s) 53, 447, 488, 522
HpyF3I CTNAG 2 cut(s) 129, 387
HpySE526I ACGT 1 cut(s) 143
Hsp92II CATG 5 cut(s) 57, 185, 309, 319, 502
HspAI GCGC 1 cut(s) 29
Kzo9I GATC 2 cut(s) 165, 527
LmnI GCTCC 2 cut(s) 36, 201
LpnPI CCDG 5 cut(s) 56, 202, 224, 229, 432
LweI GCATC 1 cut(s) 246
MaeII ACGT 1 cut(s) 143
MalI GATC 2 cut(s) 167, 529
MboI GATC 2 cut(s) 165, 527
MboII GAAGA 4 cut(s) 81, 145, 148, 235
MflI RGATCY 1 cut(s) 527
MlsI TGGCCA 1 cut(s) 220
MluCI AATT 2 cut(s) 112, 434
MluNI TGGCCA 1 cut(s) 220
MlyI GAGTC 1 cut(s) 368
MnlI CCTC 4 cut(s) 69, 90, 320, 382
Mox20I TGGCCA 1 cut(s) 220
Mph1103I ATGCAT 1 cut(s) 524
MscI TGGCCA 1 cut(s) 220
MslI CAYNNNNRTG 1 cut(s) 267
Msp20I TGGCCA 1 cut(s) 220
MspR9I CCNGG 1 cut(s) 217
Mva1269I GAATGC 1 cut(s) 524
MvaI CCWGG 1 cut(s) 217
NcoI CCATGG 2 cut(s) 315, 498
NdeII GATC 2 cut(s) 165, 527
NlaIII CATG 5 cut(s) 57, 185, 309, 319, 502
NlaIV GGNNCC 2 cut(s) 209, 274
NsiI ATGCAT 1 cut(s) 524
NspI RCATGY 1 cut(s) 185
PctI GAATGC 1 cut(s) 524
PleI GAGTC 1 cut(s) 367
PpsI GAGTC 1 cut(s) 367
Ppu21I YACGTR 1 cut(s) 144
Psp6I CCWGG 1 cut(s) 215
PspGI CCWGG 1 cut(s) 215
PspN4I GGNNCC 2 cut(s) 209, 274
PspPI GGNCC 1 cut(s) 416
PsuI RGATCY 1 cut(s) 527
RseI CAYNNNNRTG 1 cut(s) 267
Sau3AI GATC 2 cut(s) 165, 527
Sau96I GGNCC 1 cut(s) 416
SchI GAGTC 1 cut(s) 368
ScrFI CCNGG 1 cut(s) 217
SetI ASST 5 cut(s) 146, 198, 297, 393, 421
SfaNI GCATC 1 cut(s) 246
SinI GGWCC 1 cut(s) 416
SmiMI CAYNNNNRTG 1 cut(s) 267
SnaBI TACGTA 1 cut(s) 144
Sse9I AATT 2 cut(s) 112, 434
SsiI CCGC 2 cut(s) 352, 512
StyD4I CCNGG 1 cut(s) 215
StyI CCWWGG 2 cut(s) 315, 498
TaiI ACGT 1 cut(s) 146
TaqI TCGA 2 cut(s) 105, 468
TasI AATT 2 cut(s) 112, 434
TspDTI ATGAA 3 cut(s) 206, 483, 522
TspGWI ACGGA 1 cut(s) 82
VpaK11BI GGWCC 1 cut(s) 416
XapI RAATTY 2 cut(s) 112, 434
XceI RCATGY 1 cut(s) 185
Zsp2I ATGCAT 1 cut(s) 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.