Rorug06G0167800

Belongs to the NPH3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0007274
Physical Location & Seq
Forward (+)
24554691 .. 24554921
231 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0167800.1

Sequence Viewer

Length: 231 bp
ATGGGCCATGCTCATTGTACCGCCAAAGGTACTAATTCAAACCAAAGGAATGACATGCAGACACACCGCCAGGCGGGCTACAACCCCAGCGGCAGAGCACCTCCAGATCGCCTCCGACGCGCCGCCACGCGCTGCGCCAAGATGGCATCAGAAGCTTCTGAAACTGGGAACCGAAGCACATCAGTCCCACATCGAAAGCAAGGAGGAGGTCAGCCTCCTCCTCACCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB NPH3

Protein Analysis

76

Amino Acids

8.19

Weight (kDa)

11.21

Isoelectric Point (pI)

56.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 120, 130
AciI CCGC 5 cut(s) 21, 67, 74, 90, 123
AfaI GTAC 2 cut(s) 19, 31
AfiI CCNNNNNNNGG 1 cut(s) 73
AgsI TTSAA 1 cut(s) 39
AjnI CCWGG 1 cut(s) 69
AluBI AGCT 1 cut(s) 155
AluI AGCT 1 cut(s) 155
Alw21I GWGCWC 1 cut(s) 100
AoxI GGCC 1 cut(s) 4
ApeKI GCWGC 1 cut(s) 132
AspLEI GCGC 3 cut(s) 122, 132, 137
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 215
Bbv12I GWGCWC 1 cut(s) 100
BbvI GCAGC 1 cut(s) 119
BccI CCATC 1 cut(s) 136
BciT130I CCWGG 1 cut(s) 71
BglI GCCNNNNNGGC 2 cut(s) 75, 143
BisI GCNGC 3 cut(s) 91, 123, 133
BlsI GCNGC 3 cut(s) 92, 124, 134
Bme1390I CCNGG 1 cut(s) 71
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 170
BmrFI CCNGG 1 cut(s) 71
BmrI ACTGGG 1 cut(s) 174
BmsI GCATC 1 cut(s) 155
BmuI ACTGGG 1 cut(s) 174
BpmI CTGGAG 1 cut(s) 87
Bsc4I CCNNNNNNNGG 1 cut(s) 73
Bse1I ACTGG 1 cut(s) 169
BseBI CCWGG 1 cut(s) 71
BseLI CCNNNNNNNGG 1 cut(s) 73
BseNI ACTGG 1 cut(s) 169
BseRI GAGGAG 3 cut(s) 207, 210, 219
BseXI GCAGC 1 cut(s) 119
BseYI CCCAGC 1 cut(s) 86
Bsh1236I CGCG 2 cut(s) 120, 130
BshFI GGCC 1 cut(s) 6
BsiHKAI GWGCWC 1 cut(s) 100
BslFI GGGAC 1 cut(s) 170
BslI CCNNNNNNNGG 1 cut(s) 73
BsmFI GGGAC 1 cut(s) 170
BsnI GGCC 1 cut(s) 6
Bsp1286I GDGCHC 1 cut(s) 100
Bsp143I GATC 1 cut(s) 106
BspACI CCGC 5 cut(s) 21, 67, 74, 90, 123
BspANI GGCC 1 cut(s) 6
BspFNI CGCG 2 cut(s) 120, 130
BspLI GGNNCC 1 cut(s) 170
BsrI ACTGG 1 cut(s) 169
BssMI GATC 1 cut(s) 106
Bst2UI CCWGG 1 cut(s) 71
BstC8I GCNNGC 1 cut(s) 76
BstFNI CGCG 2 cut(s) 120, 130
BstHHI GCGC 3 cut(s) 122, 132, 137
BstKTI GATC 1 cut(s) 109
BstMBI GATC 1 cut(s) 106
BstMWI GCNNNNNNNGC 4 cut(s) 75, 117, 143, 152
BstNI CCWGG 1 cut(s) 71
BstNSI RCATGY 1 cut(s) 58
BstSCI CCNGG 1 cut(s) 69
BstUI CGCG 2 cut(s) 120, 130
BstV1I GCAGC 1 cut(s) 119
BsuRI GGCC 1 cut(s) 6
Cac8I GCNNGC 1 cut(s) 76
CfoI GCGC 3 cut(s) 122, 132, 137
Cfr13I GGNCC 1 cut(s) 4
CseI GACGC 1 cut(s) 126
Csp6I GTAC 2 cut(s) 18, 30
CviAII CATG 2 cut(s) 8, 55
CviJI RGCY 4 cut(s) 6, 78, 155, 214
CviKI_1 RGCY 4 cut(s) 6, 78, 155, 214
CviQI GTAC 2 cut(s) 18, 30
DpnI GATC 1 cut(s) 108
DpnII GATC 1 cut(s) 106
EcoRII CCWGG 1 cut(s) 69
FaeI CATG 2 cut(s) 11, 58
FaiI YATR 3 cut(s) 9, 56, 229
FaqI GGGAC 1 cut(s) 170
FatI CATG 2 cut(s) 7, 54
FauI CCCGC 1 cut(s) 67
Fnu4HI GCNGC 3 cut(s) 91, 123, 133
Fsp4HI GCNGC 3 cut(s) 91, 123, 133
GlaI GCGC 3 cut(s) 121, 131, 136
GluI GCNGC 3 cut(s) 91, 123, 133
GsaI CCCAGC 1 cut(s) 90
GsuI CTGGAG 1 cut(s) 87
HaeIII GGCC 1 cut(s) 6
HgaI GACGC 1 cut(s) 126
HhaI GCGC 3 cut(s) 122, 132, 137
Hin1II CATG 2 cut(s) 11, 58
Hin6I GCGC 3 cut(s) 120, 130, 135
HinP1I GCGC 3 cut(s) 120, 130, 135
HindIII AAGCTT 1 cut(s) 153
HphI GGTGA 1 cut(s) 215
Hpy188I TCNGA 3 cut(s) 116, 151, 160
Hpy188III TCNNGA 1 cut(s) 104
Hpy99I CGWCG 1 cut(s) 120
HpyCH4V TGCA 1 cut(s) 58
HpyF10VI GCNNNNNNNGC 4 cut(s) 75, 117, 143, 152
Hsp92II CATG 2 cut(s) 11, 58
HspAI GCGC 3 cut(s) 120, 130, 135
Kzo9I GATC 1 cut(s) 106
LpnPI CCDG 5 cut(s) 56, 83, 100, 117, 150
Lsp1109I GCAGC 1 cut(s) 119
LweI GCATC 1 cut(s) 155
MalI GATC 1 cut(s) 108
MboI GATC 1 cut(s) 106
MhlI GDGCHC 1 cut(s) 100
MluCI AATT 1 cut(s) 34
MmeI TCCRAC 1 cut(s) 139
MnlI CCTC 7 cut(s) 111, 122, 197, 200, 225, 228, 231
MspA1I CMGCKG 1 cut(s) 90
MspR9I CCNGG 1 cut(s) 71
MteI GCGCNGCGC 1 cut(s) 133
MvaI CCWGG 1 cut(s) 71
MvnI CGCG 2 cut(s) 120, 130
MwoI GCNNNNNNNGC 4 cut(s) 75, 117, 143, 152
NdeII GATC 1 cut(s) 106
NlaIII CATG 2 cut(s) 11, 58
NlaIV GGNNCC 1 cut(s) 170
NspI RCATGY 1 cut(s) 58
PkrI GCNGC 3 cut(s) 92, 124, 134
Psp6I CCWGG 1 cut(s) 69
PspFI CCCAGC 1 cut(s) 86
PspGI CCWGG 1 cut(s) 69
PspN4I GGNNCC 1 cut(s) 170
PspPI GGNCC 1 cut(s) 4
RsaI GTAC 2 cut(s) 19, 31
RsaNI GTAC 2 cut(s) 18, 30
SatI GCNGC 3 cut(s) 91, 123, 133
Sau3AI GATC 1 cut(s) 106
Sau96I GGNCC 1 cut(s) 4
ScrFI CCNGG 1 cut(s) 71
SduI GDGCHC 1 cut(s) 100
SetI ASST 5 cut(s) 31, 103, 157, 211, 228
SfaNI GCATC 1 cut(s) 155
Sse9I AATT 1 cut(s) 34
SsiI CCGC 5 cut(s) 21, 67, 74, 90, 123
StyD4I CCNGG 1 cut(s) 69
TaqI TCGA 1 cut(s) 193
TasI AATT 1 cut(s) 34
TauI GCSGC 2 cut(s) 93, 125
TseI GCWGC 1 cut(s) 132
XceI RCATGY 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.