Rmu_co8481861.1_g000001

Belongs to the NPH3 family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8481861.1
Physical Location & Seq
Reverse (-)
653 .. 2212
1560 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8481861.1_g000001.1.cds

Sequence Viewer

Length: 1428 bp
atgtgcgttgaagttttgcaacaatgtgagactttacttcctctagctgatgagctcagagtaattagccgctgcatagatgcaatcgcctcaaaggcctgcgtggagcaaattgcttcaagcttctcccgcttggagtatagcagctcaggaaggctacacatgaacaggcaagccaaatgtgatggggactggtggatagaagatctttctggcctccgggttgacttgtaccaaagagtcataacagccatgaagtgtcgtggagtccgccccgagagtatcggtgcatctctgatgaactatgctcagaaggagttgacaaagaagtccagcttatggaacccacctggccagacaaaagtcgatgtaatttcagtttcaactgcgcacgaaaaactcgtggttgaaacgattgtcagccttcttcctgttgagaaacttgctgttccaatcaacttccttttcgggcttttgcgaagtgcagtgattcttgattgcaccgttgcttgcagacttgatctggagaggaggattgggtctcagctggatattgcttctcttgatgatcttctgataccatctttcaagcactctggtgatactttgtttgatgtggatacggtgcataggattttaatcaacttttctcagcaagaggatagtgaagaagaagaaatggaagatggttctgtttttgaatctgatagtcctcattcgccttcccaaactgcgctttttaaggtttcaaagttagtggacaactaccttgctgaaattgctcctgatgcaaacctcaagctcactaaatttctagtcattgctgatgctttgcctgaacatgcacgaactgttcatgatgggttatatcgagccatagacatctatttaaaagcccatcaaggtttatcagatactgacaagaagaagctctgcaaactaatcgatttccaaaagctttctcaagaagccggtgcacacgctgcacagaatgagcgcctccctctccagtcgatagtacaagttctttactttgagcaattaaggctcagaaattccttgggctgctctaatggtgaagacgaacacaagccaatgcaccagtcatggcggatcagcagtggtgcactcagtgcagcaatgtctcctcgagacaactatgcatcattgaggcgagaaaaccgtgagctaaaacttgagctagctcggctacgaatgagactaaatgatcttgagagagaacatgtctgtatgaagagagatatggaaaagtccaactctcgtaaatttatgagttctttctccaagaaaattggcaagctaagcttctttggacatagttcttcaagggcatccacttctccatcaagacaatcatatagaacggattctaaggtgatcgaaagaacatgtgcaagcatagattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

475

Amino Acids

53.51

Weight (kDa)

6.69

Isoelectric Point (pI)

47.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 328
Acc16I TGCGCA 1 cut(s) 390
AccB7I CCANNNNNTGG 1 cut(s) 339
AciI CCGC 4 cut(s) 70, 130, 271, 1111
AclWI GGATC 1 cut(s) 1121
AcoI YGGCCR 1 cut(s) 352
AcsI RAATTY 3 cut(s) 809, 1054, 1286
AdeI CACNNNGTG 1 cut(s) 1133
AfaI GTAC 2 cut(s) 233, 1020
AfiI CCNNNNNNNGG 1 cut(s) 339
AflIII ACRYGT 2 cut(s) 1243, 1409
AgsI TTSAA 8 cut(s) 11, 120, 384, 410, 589, 701, 750, 1347
AjnI CCWGG 1 cut(s) 349
AleI CACNNNNGTG 1 cut(s) 597
Alw21I GWGCWC 3 cut(s) 57, 979, 1129
Alw26I GTCTC 5 cut(s) 23, 546, 1146, 1149, 1213
Alw44I GTGCAC 2 cut(s) 975, 1125
AlwI GGATC 1 cut(s) 1121
AlwNI CAGNNNCTG 1 cut(s) 917
Ama87I CYCGRG 2 cut(s) 275, 1149
AoxI GGCC 3 cut(s) 96, 214, 352
ApaLI GTGCAC 2 cut(s) 975, 1125
ApeKI GCWGC 5 cut(s) 72, 144, 983, 1065, 1136
ApoI RAATTY 3 cut(s) 809, 1054, 1286
Asp700I GAANNNNTTC 1 cut(s) 1387
AspLEI GCGC 3 cut(s) 391, 736, 999
AsuC2I CCSGG 1 cut(s) 221
AsuHPI GGTGA 3 cut(s) 611, 1088, 1408
AsuNHI GCTAGC 1 cut(s) 1201
AvaI CYCGRG 2 cut(s) 275, 1149
BaeGI GKGCMC 2 cut(s) 979, 1129
BalI TGGCCA 1 cut(s) 354
BanII GRGCYC 1 cut(s) 57
BauI CACGAG 1 cut(s) 401
BbsI GAAGAC 1 cut(s) 1086
Bbv12I GWGCWC 3 cut(s) 57, 979, 1129
BbvI GCAGC 5 cut(s) 59, 156, 970, 1052, 1148
BccI CCATC 6 cut(s) 179, 589, 680, 854, 906, 1372
BcgI CGANNNNNNTGC 2 cut(s) 925, 959
BciT130I CCWGG 1 cut(s) 351
BciVI GTATCC 1 cut(s) 613
BcnI CCSGG 1 cut(s) 221
BcoDI GTCTC 5 cut(s) 23, 546, 1146, 1149, 1213
BfaI CTAG 3 cut(s) 44, 815, 1202
BfoI RGCGCY 1 cut(s) 1000
BfuI GTATCC 1 cut(s) 613
BglI GCCNNNNNGGC 1 cut(s) 95
BglII AGATCT 1 cut(s) 205
BisI GCNGC 6 cut(s) 70, 73, 145, 984, 1066, 1137
BlpI GCTNAGC 1 cut(s) 1322
BlsI GCNGC 6 cut(s) 71, 74, 146, 985, 1067, 1138
Bme1390I CCNGG 2 cut(s) 221, 351
BmeT110I CYCGRG 2 cut(s) 275, 1149
BmiI GGNNCC 1 cut(s) 344
BmrFI CCNGG 2 cut(s) 221, 351
BmsI GCATC 6 cut(s) 70, 299, 778, 817, 1172, 1361
BmtI GCTAGC 1 cut(s) 1205
BoxI GACNNNNGTC 1 cut(s) 362
BpiI GAAGAC 1 cut(s) 1086
BpmI CTGGAG 2 cut(s) 545, 992
Bpu10I CCTNAGC 1 cut(s) 148
Bpu1102I GCTNAGC 1 cut(s) 1322
BpuEI CTTGAG 4 cut(s) 782, 948, 1217, 1253
BpuMI CCSGG 1 cut(s) 221
Bsa29I ATCGAT 1 cut(s) 945
BsaBI GATNNNNATC 1 cut(s) 638
BsaI GGTCTC 1 cut(s) 546
BsaJI CCNNGG 1 cut(s) 1059
Bsc4I CCNNNNNNNGG 1 cut(s) 339
Bse118I RCCGGY 1 cut(s) 971
Bse1I ACTGG 3 cut(s) 197, 1009, 1102
Bse3DI GCAATG 2 cut(s) 819, 1146
Bse8I GATNNNNATC 1 cut(s) 638
BseBI CCWGG 1 cut(s) 351
BseCI ATCGAT 1 cut(s) 945
BseDI CCNNGG 1 cut(s) 1059
BseGI GGATG 1 cut(s) 1352
BseJI GATNNNNATC 1 cut(s) 638
BseLI CCNNNNNNNGG 1 cut(s) 339
BseMI GCAATG 2 cut(s) 819, 1146
BseMII CTCAG 7 cut(s) 70, 162, 323, 557, 665, 1063, 1144
BseNI ACTGG 3 cut(s) 197, 1009, 1102
BseRI GAGGAG 2 cut(s) 544, 1137
BseSI GKGCMC 2 cut(s) 979, 1129
BseXI GCAGC 5 cut(s) 59, 156, 970, 1052, 1148
BsgI GTGCAG 3 cut(s) 504, 969, 1155
BshFI GGCC 3 cut(s) 98, 216, 354
BshVI ATCGAT 1 cut(s) 945
BsiHKAI GWGCWC 3 cut(s) 57, 979, 1129
BsiHKCI CYCGRG 2 cut(s) 275, 1149
BsiSI CCGG 2 cut(s) 220, 972
BslFI GGGAC 1 cut(s) 203
BslI CCNNNNNNNGG 1 cut(s) 339
BsmAI GTCTC 5 cut(s) 23, 546, 1146, 1149, 1213
BsmFI GGGAC 1 cut(s) 203
BsnI GGCC 3 cut(s) 98, 216, 354
Bso31I GGTCTC 1 cut(s) 546
BsoBI CYCGRG 2 cut(s) 275, 1149
Bsp1286I GDGCHC 3 cut(s) 57, 979, 1129
Bsp143I GATC 6 cut(s) 205, 520, 568, 1113, 1228, 1398
Bsp1720I GCTNAGC 1 cut(s) 1322
BspACI CCGC 4 cut(s) 70, 130, 271, 1111
BspANI GGCC 3 cut(s) 98, 216, 354
BspCNI CTCAG 7 cut(s) 69, 161, 322, 556, 664, 1062, 1143
BspDI ATCGAT 1 cut(s) 945
BspHI TCATGA 1 cut(s) 856
BspLI GGNNCC 1 cut(s) 344
BspOI GCTAGC 1 cut(s) 1205
BspPI GGATC 1 cut(s) 1121
BspTNI GGTCTC 1 cut(s) 546
BsrDI GCAATG 2 cut(s) 819, 1146
BsrFI RCCGGY 1 cut(s) 971
BsrI ACTGG 3 cut(s) 197, 1009, 1102
BssAI RCCGGY 1 cut(s) 971
BssECI CCNNGG 1 cut(s) 1059
BssMI GATC 6 cut(s) 205, 520, 568, 1113, 1228, 1398
BssSI CACGAG 1 cut(s) 401
BssT1I CCWWGG 1 cut(s) 1059
Bst2BI CACGAG 1 cut(s) 401
Bst2UI CCWGG 1 cut(s) 351
Bst4CI ACNGT 4 cut(s) 505, 625, 853, 1184
Bst6I CTCTTC 1 cut(s) 1250
BstAPI GCANNNNNTGC 2 cut(s) 983, 1133
BstC8I GCNNGC 6 cut(s) 100, 174, 511, 1203, 1319, 1417
BstDEI CTNAG 9 cut(s) 56, 148, 309, 543, 651, 1049, 1130, 1322, 1392
BstF5I GGATG 1 cut(s) 1352
BstH2I RGCGCY 1 cut(s) 1000
BstHHI GCGC 3 cut(s) 391, 736, 999
BstKTI GATC 6 cut(s) 208, 523, 571, 1116, 1231, 1401
BstMAI GTCTC 5 cut(s) 23, 546, 1146, 1149, 1213
BstMBI GATC 6 cut(s) 205, 520, 568, 1113, 1228, 1398
BstMWI GCNNNNNNNGC 9 cut(s) 95, 129, 779, 788, 983, 1045, 1133, 1207, 1323
BstNI CCWGG 1 cut(s) 351
BstNSI RCATGY 3 cut(s) 845, 1247, 1413
BstPAI GACNNNNGTC 1 cut(s) 362
BstSCI CCNGG 2 cut(s) 219, 349
BstSLI GKGCMC 2 cut(s) 979, 1129
BstV1I GCAGC 5 cut(s) 59, 156, 970, 1052, 1148
BstV2I GAAGAC 1 cut(s) 1086
BstX2I RGATCY 1 cut(s) 205
BstYI RGATCY 1 cut(s) 205
Bsu15I ATCGAT 1 cut(s) 945
BsuI GTATCC 1 cut(s) 613
BsuRI GGCC 3 cut(s) 98, 216, 354
BsuTUI ATCGAT 1 cut(s) 945
BtsCI GGATG 1 cut(s) 1352
BtsI GCAGTG 2 cut(s) 492, 1126
BtsIMutI CAGTG 3 cut(s) 492, 1126, 1138
Cac8I GCNNGC 6 cut(s) 100, 174, 511, 1203, 1319, 1417
CaiI CAGNNNCTG 1 cut(s) 917
CciI TCATGA 1 cut(s) 856
CfoI GCGC 3 cut(s) 391, 736, 999
Cfr10I RCCGGY 1 cut(s) 971
ClaI ATCGAT 1 cut(s) 945
Csp6I GTAC 2 cut(s) 232, 1019
CspCI CAANNNNNGTGG 2 cut(s) 738, 773
CviAII CATG 7 cut(s) 163, 253, 842, 857, 1107, 1244, 1410
CviQI GTAC 2 cut(s) 232, 1019
DdeI CTNAG 9 cut(s) 56, 148, 309, 543, 651, 1049, 1130, 1322, 1392
DpnI GATC 6 cut(s) 207, 522, 570, 1115, 1230, 1400
DpnII GATC 6 cut(s) 205, 520, 568, 1113, 1228, 1398
DraI TTTAAA 1 cut(s) 891
DraIII CACNNNGTG 1 cut(s) 1133
DrdI GACNNNNNNGTC 1 cut(s) 328
DseDI GACNNNNNNGTC 1 cut(s) 328
EaeI YGGCCR 1 cut(s) 352
Eam1104I CTCTTC 1 cut(s) 1250
EarI CTCTTC 1 cut(s) 1250
EciI GGCGGA 2 cut(s) 260, 1126
Ecl136II GAGCTC 1 cut(s) 55
Eco130I CCWWGG 1 cut(s) 1059
Eco147I AGGCCT 1 cut(s) 98
Eco24I GRGCYC 1 cut(s) 57
Eco31I GGTCTC 1 cut(s) 546
Eco53kI GAGCTC 1 cut(s) 55
Eco88I CYCGRG 2 cut(s) 275, 1149
EcoICRI GAGCTC 1 cut(s) 55
EcoRII CCWGG 1 cut(s) 349
EcoT14I CCWWGG 1 cut(s) 1059
EcoT22I ATGCAT 1 cut(s) 1165
EcoT38I GRGCYC 1 cut(s) 57
ErhI CCWWGG 1 cut(s) 1059
FaeI CATG 7 cut(s) 166, 256, 845, 860, 1110, 1247, 1413
FalI AAGNNNNNCTT 4 cut(s) 320, 352, 1310, 1342
FaqI GGGAC 1 cut(s) 203
FatI CATG 7 cut(s) 162, 252, 841, 856, 1106, 1243, 1409
FauI CCCGC 1 cut(s) 137
Fnu4HI GCNGC 6 cut(s) 70, 73, 145, 984, 1066, 1137
FokI GGATG 1 cut(s) 1339
FriOI GRGCYC 1 cut(s) 57
Fsp4HI GCNGC 6 cut(s) 70, 73, 145, 984, 1066, 1137
FspBI CTAG 3 cut(s) 44, 815, 1202
FspI TGCGCA 1 cut(s) 390
GlaI GCGC 3 cut(s) 390, 735, 998
GluI GCNGC 6 cut(s) 70, 73, 145, 984, 1066, 1137
GsuI CTGGAG 2 cut(s) 545, 992
HaeII RGCGCY 1 cut(s) 1000
HaeIII GGCC 3 cut(s) 98, 216, 354
HapII CCGG 2 cut(s) 220, 972
HhaI GCGC 3 cut(s) 391, 736, 999
Hin1II CATG 7 cut(s) 166, 256, 845, 860, 1110, 1247, 1413
Hin6I GCGC 3 cut(s) 389, 734, 997
HinP1I GCGC 3 cut(s) 389, 734, 997
HincII GTYRAC 2 cut(s) 226, 321
HindII GTYRAC 2 cut(s) 226, 321
HindIII AAGCTT 3 cut(s) 121, 956, 1324
HinfI GANTC 5 cut(s) 240, 267, 490, 701, 1388
HpaII CCGG 2 cut(s) 220, 972
HphI GGTGA 3 cut(s) 611, 1088, 1408
Hpy166II GTNNAC 5 cut(s) 226, 321, 760, 977, 1127
Hpy188I TCNGA 7 cut(s) 59, 297, 312, 576, 706, 913, 1052
Hpy8I GTNNAC 5 cut(s) 226, 321, 760, 977, 1127
HpyAV CCTTC 4 cut(s) 147, 307, 434, 732
HpyCH4III ACNGT 4 cut(s) 505, 625, 853, 1184
HpyF10VI GCNNNNNNNGC 9 cut(s) 95, 129, 779, 788, 983, 1045, 1133, 1207, 1323
HpyF3I CTNAG 9 cut(s) 56, 148, 309, 543, 651, 1049, 1130, 1322, 1392
Hsp92II CATG 7 cut(s) 166, 256, 845, 860, 1110, 1247, 1413
HspAI GCGC 3 cut(s) 389, 734, 997
Kzo9I GATC 6 cut(s) 205, 520, 568, 1113, 1228, 1398
LmnI GCTCC 2 cut(s) 106, 787
Lsp1109I GCAGC 5 cut(s) 59, 156, 970, 1052, 1148
LweI GCATC 6 cut(s) 70, 299, 778, 817, 1172, 1361
MaeI CTAG 3 cut(s) 44, 815, 1202
MalI GATC 6 cut(s) 207, 522, 570, 1115, 1230, 1400
MboI GATC 6 cut(s) 205, 520, 568, 1113, 1228, 1398
MflI RGATCY 1 cut(s) 205
MhlI GDGCHC 3 cut(s) 57, 979, 1129
MlsI TGGCCA 1 cut(s) 354
MluCI AATT 9 cut(s) 63, 111, 372, 777, 809, 1040, 1054, 1286, 1311
MluNI TGGCCA 1 cut(s) 354
MlyI GAGTC 2 cut(s) 249, 276
MmeI TCCRAC 1 cut(s) 1299
Mox20I TGGCCA 1 cut(s) 354
Mph1103I ATGCAT 1 cut(s) 1165
MroXI GAANNNNTTC 1 cut(s) 1387
MscI TGGCCA 1 cut(s) 354
MseI TTAA 4 cut(s) 638, 741, 890, 1043
MslI CAYNNNNRTG 1 cut(s) 597
Msp20I TGGCCA 1 cut(s) 354
MspA1I CMGCKG 2 cut(s) 72, 547
MspI CCGG 2 cut(s) 220, 972
MspR9I CCNGG 2 cut(s) 221, 351
MvaI CCWGG 1 cut(s) 351
MwoI GCNNNNNNNGC 9 cut(s) 95, 129, 779, 788, 983, 1045, 1133, 1207, 1323
NciI CCSGG 1 cut(s) 221
NdeII GATC 6 cut(s) 205, 520, 568, 1113, 1228, 1398
NheI GCTAGC 1 cut(s) 1201
NlaIII CATG 7 cut(s) 166, 256, 845, 860, 1110, 1247, 1413
NlaIV GGNNCC 1 cut(s) 344
NmeAIII GCCGAG 1 cut(s) 1186
NsbI TGCGCA 1 cut(s) 390
NsiI ATGCAT 1 cut(s) 1165
NspI RCATGY 3 cut(s) 845, 1247, 1413
OliI CACNNNNGTG 1 cut(s) 597
PaeR7I CTCGAG 1 cut(s) 1149
PagI TCATGA 1 cut(s) 856
PceI AGGCCT 1 cut(s) 98
PciI ACATGT 2 cut(s) 1243, 1409
PcsI WCGNNNNNNNCGW 1 cut(s) 399
PdmI GAANNNNTTC 1 cut(s) 1387
PfeI GAWTC 3 cut(s) 490, 701, 1388
PflMI CCANNNNNTGG 1 cut(s) 339
PkrI GCNGC 6 cut(s) 71, 74, 146, 985, 1067, 1138
PleI GAGTC 2 cut(s) 248, 275
PpsI GAGTC 2 cut(s) 248, 275
PscI ACATGT 2 cut(s) 1243, 1409
PshAI GACNNNNGTC 1 cut(s) 362
Psp124BI GAGCTC 1 cut(s) 57
Psp6I CCWGG 1 cut(s) 349
PspGI CCWGG 1 cut(s) 349
PspN4I GGNNCC 1 cut(s) 344
PstNI CAGNNNCTG 1 cut(s) 917
PsuI RGATCY 1 cut(s) 205
PvuII CAGCTG 1 cut(s) 547
RsaI GTAC 2 cut(s) 233, 1020
RsaNI GTAC 2 cut(s) 232, 1019
RseI CAYNNNNRTG 1 cut(s) 597
SacI GAGCTC 1 cut(s) 57
SaqAI TTAA 4 cut(s) 638, 741, 890, 1043
SatI GCNGC 6 cut(s) 70, 73, 145, 984, 1066, 1137
Sau3AI GATC 6 cut(s) 205, 520, 568, 1113, 1228, 1398
SchI GAGTC 2 cut(s) 249, 276
ScrFI CCNGG 2 cut(s) 221, 351
SduI GDGCHC 3 cut(s) 57, 979, 1129
SfaNI GCATC 6 cut(s) 70, 299, 778, 817, 1172, 1361
Sfr274I CTCGAG 1 cut(s) 1149
SlaI CTCGAG 1 cut(s) 1149
SmiMI CAYNNNNRTG 1 cut(s) 597
SmlI CTYRAG 5 cut(s) 797, 963, 1149, 1196, 1232
SmoI CTYRAG 5 cut(s) 797, 963, 1149, 1196, 1232
Sse9I AATT 9 cut(s) 63, 111, 372, 777, 809, 1040, 1054, 1286, 1311
SseBI AGGCCT 1 cut(s) 98
SsiI CCGC 4 cut(s) 70, 130, 271, 1111
SspMI CTAG 3 cut(s) 44, 815, 1202
SstI GAGCTC 1 cut(s) 57
StuI AGGCCT 1 cut(s) 98
StyD4I CCNGG 2 cut(s) 219, 349
StyI CCWWGG 1 cut(s) 1059
TaaI ACNGT 4 cut(s) 505, 625, 853, 1184
TaqI TCGA 6 cut(s) 366, 871, 945, 1013, 1150, 1401
TasI AATT 9 cut(s) 63, 111, 372, 777, 809, 1040, 1054, 1286, 1311
TatI WGTACW 1 cut(s) 1018
TauI GCSGC 1 cut(s) 72
TfiI GAWTC 3 cut(s) 490, 701, 1388
Tru1I TTAA 4 cut(s) 638, 741, 890, 1043
Tru9I TTAA 4 cut(s) 638, 741, 890, 1043
TscAI CASTG 3 cut(s) 492, 1126, 1138
TseI GCWGC 5 cut(s) 72, 144, 983, 1065, 1136
TspDTI ATGAA 5 cut(s) 179, 269, 314, 845, 1268
TspGWI ACGGA 1 cut(s) 1400
TspRI CASTG 3 cut(s) 492, 1126, 1138
Van91I CCANNNNNTGG 1 cut(s) 339
VneI GTGCAC 2 cut(s) 975, 1125
XapI RAATTY 3 cut(s) 809, 1054, 1286
XceI RCATGY 3 cut(s) 845, 1247, 1413
XhoI CTCGAG 1 cut(s) 1149
XmnI GAANNNNTTC 1 cut(s) 1387
XspI CTAG 3 cut(s) 44, 815, 1202
Zsp2I ATGCAT 1 cut(s) 1165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.