Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0007274

Physical Location & Seq

Genomic Coordinates Reverse (-)

46918820 .. 46923333

Gene Structure 4514 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG275700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1407 bp

ATGGACCGCGGCGGGGACAAGCAGCACCACCAGCAGCAGCAGCTCTCTTTGCCTAAGAGTGCAAGGCAGCAGCACAGATATAACGAATGGATTTTCCGGGATGTTCCAAGTGATATTACAATAGAAGTGAATGGAGGTGCTTTCTCACTGCATAAGTTCCCTCTTGTCTCTCGAAGTGGGCGCATCCGGAAGCTAGTAGCTGAACATAGAGATTCTGATATCTCAAGGGTGGAGCTTCTTAATCTACCAGGAGGCGCTGAAACATTTGAGTTGGCAGCGAAATTCTGTTATGGTATTAACTTTGAAATCACATCAGCAAATGTTGCGCAGCTGTGTTGTATATCCGATTTCCTTGAAATGACTGAAGAGTTCTCAAAAGATAATCTTGGCTCGCGTGCTGAAGAGTATCTCGAAAGCATTGTTTGCAAGAGTCTTGAAATGTGCGTTGAAGTTTTGCAACAATGTGAGACTTTACTTCCTCTAGCTGATGAGCTCAGAGTAATTAGCCGCTGCATAGATGCAATCGCCTCAAAGGCCTGCGTGGAGCAAATTGCTTCAAGCTTCTCCCGCTTGGAGTATAGCAGCTCAGGAAGGCTACACATGAACAGGCAAGCCAAATGTGATGGGGACTGGTGGATAGAAGATCTTTCTGGCCTCCGGGTTGACTTGTACCAAAGAGTCATAACAGCCATGAAGTGTCGTGGAGTCCGCCCCGAGAGTATCGGTGCATCTCTGATGAACTATGCTCAGAAGGAGTTGACAAAGAAGTCCAGCTTATGGAACCCACCTGGCCAGACAAAAGTTGATGTAATTTCAGTTTCAACTGCGCACGAAAAACTCGTAGTTGAAACGATTGTCAGCCTTCTTCCTGTTGAGAAACTTGCTGTTCCAATCAACTTCCTTTTCGGGCTTTTGCGAAGTGCAGTGATTCTTGATTGCACCGTTGCTTGCAGACTTGATCTGGAGAGGAGGATTGGGTCTCAGCTGGATATTGCTTCTCTTGATGATCTTCTGATACCATCTTTCAAGCACTCTGGTGATACTTTGTTTGATGTGGATACGGTGCATAGGATTTTAATTAACTTTTCTCAGCAAGAGGATAGTGAAGAAGAAGAAATGGAAGATGGTTCTGTTTTTGAATCTGATAGTCCCCATTCGCCTTCCCAAACCGCGCTTTTTAAGGTTTCAAAGTTAGTGGACAACTACCTTGCTGAGATTGCTCCTGATGCAAACCTCAAGCTCACTAAATTTCTAGTCATTGCTGATGCTTTGCCTGAACATGCACGAACTGTTCATGATGGGTTATATCGAGCCATAGACATCTATTTAAAAGTATGTCTTTATCATCTTTTTCCTCGGAATTATGCAATATGCTTCACTTATGCATTATACACTCTTGTTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

468

Amino Acids

52.74

Weight (kDa)

5.28

Isoelectric Point (pI)

42.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	37 - 122	7.9e-06	BTB/POZ domain
NPH3	PF03000	210 - 445	2e-80	NPH3 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007274)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48800
fragaria_vesca	FvH4_2g19060 FvH4_2g19060 FvH4_2g19060 FvH4_2g19060
malus_domestica	MD05G1175400.v1.1 MD10G1164500.v1.1
prunus_persica	Prupe.8G203100_v2.0.a1
pyrus_communis	pycom05g16220 pycom10g14180
rosa_chinensis	RchiOBHm_Chr6g0284881
rosa_laevigata	RLG00000012705
rosa_multiflora	Rmu_co8481861.1_g000001 Rmu_sc0000686.1_g000019
rosa_roxburghii	Rroxscaffold_7G00184270
rosa_rugosa	Rorug06G0167700 Rorug06G0167800 Rorug06G0167900 Rorug06G0167900 Rorug06G0168000
rosa_samantha	Rh6AG280300 Rh6BG280600 Rh6CG282600 Rh6DG275700
rosa_wichuraiana	Rw6G024090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	766
Acc16I	TGCGCA	2 cut(s)	327, 828
AccB7I	CCANNNNNTGG	1 cut(s)	777
AccII	CGCG	3 cut(s)	9, 394, 1172
AccIII	TCCGGA	1 cut(s)	186
AciI	CCGC	7 cut(s)	7, 9, 12, 508, 568, 709, 1170
AcoI	YGGCCR	1 cut(s)	790
AcsI	RAATTY	2 cut(s)	281, 1247
AcuI	CTGAAG	2 cut(s)	384, 420
AfaI	GTAC	1 cut(s)	671
AfiI	CCNNNNNNNGG	2 cut(s)	13, 777
AjnI	CCWGG	2 cut(s)	247, 787
AleI	CACNNNNGTG	1 cut(s)	1035
Alw21I	GWGCWC	1 cut(s)	495
Alw26I	GTCTC	3 cut(s)	172, 461, 984
Ama87I	CYCGRG	1 cut(s)	713
Aor13HI	TCCGGA	1 cut(s)	186
AoxI	GGCC	3 cut(s)	534, 652, 790
ApoI	RAATTY	2 cut(s)	281, 1247
AspLEI	GCGC	5 cut(s)	183, 257, 328, 829, 1174
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	2 cut(s)	98, 659
AsuHPI	GGTGA	1 cut(s)	1049
AvaI	CYCGRG	1 cut(s)	713
AvaII	GGWCC	1 cut(s)	4
BalI	TGGCCA	1 cut(s)	792
BanII	GRGCYC	1 cut(s)	495
Bbv12I	GWGCWC	1 cut(s)	495
BccI	CCATC	4 cut(s)	617, 1027, 1118, 1292
BciT130I	CCWGG	2 cut(s)	249, 789
BciVI	GTATCC	1 cut(s)	1051
BcnI	CCSGG	2 cut(s)	98, 659
BcoDI	GTCTC	3 cut(s)	172, 461, 984
BfaI	CTAG	4 cut(s)	194, 482, 1253, 1405
BfoI	RGCGCY	1 cut(s)	258
BfuI	GTATCC	1 cut(s)	1051
BglI	GCCNNNNNGGC	1 cut(s)	533
BglII	AGATCT	1 cut(s)	643
Bme1390I	CCNGG	4 cut(s)	98, 249, 659, 789
Bme18I	GGWCC	1 cut(s)	4
BmeT110I	CYCGRG	1 cut(s)	713
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	782
BmrFI	CCNGG	4 cut(s)	98, 249, 659, 789
BmsI	GCATC	5 cut(s)	192, 508, 737, 1216, 1255
BpmI	CTGGAG	1 cut(s)	983
Bpu10I	CCTNAGC	1 cut(s)	586
BpuEI	CTTGAG	2 cut(s)	208, 1220
BpuMI	CCSGG	2 cut(s)	98, 659
BsaI	GGTCTC	1 cut(s)	984
BsaJI	CCNNGG	2 cut(s)	7, 1355
BsaWI	WCCGGW	1 cut(s)	186
Bsc4I	CCNNNNNNNGG	2 cut(s)	13, 777
Bse1I	ACTGG	1 cut(s)	635
Bse3DI	GCAATG	1 cut(s)	1257
BseAI	TCCGGA	1 cut(s)	186
BseBI	CCWGG	2 cut(s)	249, 789
BseDI	CCNNGG	2 cut(s)	7, 1355
BseGI	GGATG	2 cut(s)	106, 183
BseLI	CCNNNNNNNGG	2 cut(s)	13, 777
BseMI	GCAATG	1 cut(s)	1257
BseMII	CTCAG	6 cut(s)	508, 600, 761, 995, 1103, 1203
BseNI	ACTGG	1 cut(s)	635
BseRI	GAGGAG	1 cut(s)	982
BsgI	GTGCAG	1 cut(s)	942
Bsh1236I	CGCG	3 cut(s)	9, 394, 1172
BshFI	GGCC	3 cut(s)	536, 654, 792
BsiHKAI	GWGCWC	1 cut(s)	495
BsiHKCI	CYCGRG	1 cut(s)	713
BsiSI	CCGG	3 cut(s)	97, 187, 658
BslFI	GGGAC	3 cut(s)	29, 641, 1134
BslI	CCNNNNNNNGG	2 cut(s)	13, 777
BsmAI	GTCTC	3 cut(s)	172, 461, 984
BsmFI	GGGAC	3 cut(s)	29, 641, 1134
BsnI	GGCC	3 cut(s)	536, 654, 792
Bso31I	GGTCTC	1 cut(s)	984
BsoBI	CYCGRG	1 cut(s)	713
Bsp1286I	GDGCHC	1 cut(s)	495
Bsp13I	TCCGGA	1 cut(s)	186
Bsp143I	GATC	3 cut(s)	643, 958, 1006
BspACI	CCGC	7 cut(s)	7, 9, 12, 508, 568, 709, 1170
BspANI	GGCC	3 cut(s)	536, 654, 792
BspCNI	CTCAG	6 cut(s)	507, 599, 760, 994, 1102, 1204
BspEI	TCCGGA	1 cut(s)	186
BspFNI	CGCG	3 cut(s)	9, 394, 1172
BspHI	TCATGA	1 cut(s)	1294
BspLI	GGNNCC	1 cut(s)	782
BspTNI	GGTCTC	1 cut(s)	984
BsrDI	GCAATG	1 cut(s)	1257
BsrI	ACTGG	1 cut(s)	635
BssECI	CCNNGG	2 cut(s)	7, 1355
BssMI	GATC	3 cut(s)	643, 958, 1006
Bst2UI	CCWGG	2 cut(s)	249, 789
Bst4CI	ACNGT	3 cut(s)	943, 1063, 1291
Bst6I	CTCTTC	2 cut(s)	360, 396
BstAPI	GCANNNNNTGC	2 cut(s)	323, 423
BstC8I	GCNNGC	5 cut(s)	392, 396, 538, 612, 949
BstDEI	CTNAG	7 cut(s)	54, 494, 586, 747, 981, 1089, 1212
BstDSI	CCRYGG	1 cut(s)	7
BstF5I	GGATG	2 cut(s)	106, 183
BstFNI	CGCG	3 cut(s)	9, 394, 1172
BstH2I	RGCGCY	1 cut(s)	258
BstHHI	GCGC	5 cut(s)	183, 257, 328, 829, 1174
BstKTI	GATC	3 cut(s)	646, 961, 1009
BstMAI	GTCTC	3 cut(s)	172, 461, 984
BstMBI	GATC	3 cut(s)	643, 958, 1006
BstMWI	GCNNNNNNNGC	9 cut(s)	31, 40, 49, 323, 423, 533, 567, 1217, 1226
BstNI	CCWGG	2 cut(s)	249, 789
BstNSI	RCATGY	1 cut(s)	1283
BstSCI	CCNGG	4 cut(s)	96, 247, 657, 787
BstUI	CGCG	3 cut(s)	9, 394, 1172
BstX2I	RGATCY	1 cut(s)	643
BstYI	RGATCY	1 cut(s)	643
BsuI	GTATCC	1 cut(s)	1051
BsuRI	GGCC	3 cut(s)	536, 654, 792
BtgI	CCRYGG	1 cut(s)	7
BtsCI	GGATG	2 cut(s)	106, 183
BtsI	GCAGTG	2 cut(s)	146, 930
BtsIMutI	CAGTG	2 cut(s)	146, 930
Cac8I	GCNNGC	5 cut(s)	392, 396, 538, 612, 949
CciI	TCATGA	1 cut(s)	1294
CfoI	GCGC	5 cut(s)	183, 257, 328, 829, 1174
Cfr13I	GGNCC	1 cut(s)	4
Cfr42I	CCGCGG	1 cut(s)	10
Csp6I	GTAC	1 cut(s)	670
CspCI	CAANNNNNGTGG	2 cut(s)	1176, 1211
CviAII	CATG	4 cut(s)	601, 691, 1280, 1295
CviQI	GTAC	1 cut(s)	670
DdeI	CTNAG	7 cut(s)	54, 494, 586, 747, 981, 1089, 1212
DpnI	GATC	3 cut(s)	645, 960, 1008
DpnII	GATC	3 cut(s)	643, 958, 1006
DraI	TTTAAA	1 cut(s)	1329
DrdI	GACNNNNNNGTC	1 cut(s)	766
DseDI	GACNNNNNNGTC	1 cut(s)	766
EaeI	YGGCCR	1 cut(s)	790
Eam1104I	CTCTTC	2 cut(s)	360, 396
EarI	CTCTTC	2 cut(s)	360, 396
EciI	GGCGGA	1 cut(s)	698
Ecl136II	GAGCTC	1 cut(s)	493
Eco147I	AGGCCT	1 cut(s)	536
Eco24I	GRGCYC	1 cut(s)	495
Eco31I	GGTCTC	1 cut(s)	984
Eco32I	GATATC	1 cut(s)	220
Eco47I	GGWCC	1 cut(s)	4
Eco53kI	GAGCTC	1 cut(s)	493
Eco57I	CTGAAG	2 cut(s)	384, 420
Eco88I	CYCGRG	1 cut(s)	713
EcoICRI	GAGCTC	1 cut(s)	493
EcoRII	CCWGG	2 cut(s)	247, 787
EcoRV	GATATC	1 cut(s)	220
EcoT22I	ATGCAT	1 cut(s)	1387
EcoT38I	GRGCYC	1 cut(s)	495
FaeI	CATG	4 cut(s)	604, 694, 1283, 1298
FalI	AAGNNNNNCTT	6 cut(s)	369, 401, 758, 790, 1323, 1355
FaqI	GGGAC	3 cut(s)	29, 641, 1134
FatI	CATG	4 cut(s)	600, 690, 1279, 1294
FauI	CCCGC	2 cut(s)	5, 575
FokI	GGATG	2 cut(s)	113, 170
FriOI	GRGCYC	1 cut(s)	495
FspBI	CTAG	4 cut(s)	194, 482, 1253, 1405
FspI	TGCGCA	2 cut(s)	327, 828
GlaI	GCGC	5 cut(s)	182, 256, 327, 828, 1173
GsuI	CTGGAG	1 cut(s)	983
HaeII	RGCGCY	1 cut(s)	258
HaeIII	GGCC	3 cut(s)	536, 654, 792
HapII	CCGG	3 cut(s)	97, 187, 658
HhaI	GCGC	5 cut(s)	183, 257, 328, 829, 1174
Hin1II	CATG	4 cut(s)	604, 694, 1283, 1298
Hin6I	GCGC	5 cut(s)	181, 255, 326, 827, 1172
HinP1I	GCGC	5 cut(s)	181, 255, 326, 827, 1172
HincII	GTYRAC	2 cut(s)	664, 759
HindII	GTYRAC	2 cut(s)	664, 759
HindIII	AAGCTT	1 cut(s)	559
HinfI	GANTC	6 cut(s)	212, 430, 678, 705, 928, 1139
HpaII	CCGG	3 cut(s)	97, 187, 658
HphI	GGTGA	1 cut(s)	1049
Hpy166II	GTNNAC	3 cut(s)	664, 759, 1198
Hpy188I	TCNGA	8 cut(s)	217, 346, 497, 735, 750, 1014, 1144, 1359
Hpy8I	GTNNAC	3 cut(s)	664, 759, 1198
HpyAV	CCTTC	4 cut(s)	585, 745, 872, 1170
HpyCH4III	ACNGT	3 cut(s)	943, 1063, 1291
HpyF10VI	GCNNNNNNNGC	9 cut(s)	31, 40, 49, 323, 423, 533, 567, 1217, 1226
HpyF3I	CTNAG	7 cut(s)	54, 494, 586, 747, 981, 1089, 1212
Hsp92II	CATG	4 cut(s)	604, 694, 1283, 1298
HspAI	GCGC	5 cut(s)	181, 255, 326, 827, 1172
Kpn2I	TCCGGA	1 cut(s)	186
KspI	CCGCGG	1 cut(s)	10
Kzo9I	GATC	3 cut(s)	643, 958, 1006
LmnI	GCTCC	3 cut(s)	232, 544, 1225
LweI	GCATC	5 cut(s)	192, 508, 737, 1216, 1255
MaeI	CTAG	4 cut(s)	194, 482, 1253, 1405
MalI	GATC	3 cut(s)	645, 960, 1008
MboI	GATC	3 cut(s)	643, 958, 1006
MboII	GAAGA	9 cut(s)	377, 413, 653, 857, 1001, 1118, 1121, 1124, 1133
MflI	RGATCY	1 cut(s)	643
MhlI	GDGCHC	1 cut(s)	495
MlsI	TGGCCA	1 cut(s)	792
MluCI	AATT	7 cut(s)	281, 501, 549, 810, 1077, 1247, 1360
MluNI	TGGCCA	1 cut(s)	792
MlyI	GAGTC	3 cut(s)	439, 687, 714
Mox20I	TGGCCA	1 cut(s)	792
Mph1103I	ATGCAT	1 cut(s)	1387
MroI	TCCGGA	1 cut(s)	186
MscI	TGGCCA	1 cut(s)	792
MseI	TTAA	6 cut(s)	240, 297, 1076, 1080, 1179, 1328
MslI	CAYNNNNRTG	1 cut(s)	1035
Msp20I	TGGCCA	1 cut(s)	792
MspA1I	CMGCKG	4 cut(s)	9, 331, 510, 985
MspI	CCGG	3 cut(s)	97, 187, 658
MspR9I	CCNGG	4 cut(s)	98, 249, 659, 789
MvaI	CCWGG	2 cut(s)	249, 789
MvnI	CGCG	3 cut(s)	9, 394, 1172
MwoI	GCNNNNNNNGC	9 cut(s)	31, 40, 49, 323, 423, 533, 567, 1217, 1226
NciI	CCSGG	2 cut(s)	98, 659
NdeII	GATC	3 cut(s)	643, 958, 1006
NlaIII	CATG	4 cut(s)	604, 694, 1283, 1298
NlaIV	GGNNCC	1 cut(s)	782
NsbI	TGCGCA	2 cut(s)	327, 828
NsiI	ATGCAT	1 cut(s)	1387
NspI	RCATGY	1 cut(s)	1283
OliI	CACNNNNGTG	1 cut(s)	1035
PacI	TTAATTAA	1 cut(s)	1080
PagI	TCATGA	1 cut(s)	1294
PceI	AGGCCT	1 cut(s)	536
PcsI	WCGNNNNNNNCGW	1 cut(s)	837
PfeI	GAWTC	3 cut(s)	212, 928, 1139
PflMI	CCANNNNNTGG	1 cut(s)	777
PfoI	TCCNGGA	1 cut(s)	96
PleI	GAGTC	3 cut(s)	438, 686, 713
PpsI	GAGTC	3 cut(s)	438, 686, 713
Psp124BI	GAGCTC	1 cut(s)	495
Psp6I	CCWGG	2 cut(s)	247, 787
PspGI	CCWGG	2 cut(s)	247, 787
PspN4I	GGNNCC	1 cut(s)	782
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	1 cut(s)	643
PvuII	CAGCTG	2 cut(s)	331, 985
RsaI	GTAC	1 cut(s)	671
RsaNI	GTAC	1 cut(s)	670
RseI	CAYNNNNRTG	1 cut(s)	1035
SacI	GAGCTC	1 cut(s)	495
SacII	CCGCGG	1 cut(s)	10
SaqAI	TTAA	6 cut(s)	240, 297, 1076, 1080, 1179, 1328
Sau3AI	GATC	3 cut(s)	643, 958, 1006
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	3 cut(s)	439, 687, 714
ScrFI	CCNGG	4 cut(s)	98, 249, 659, 789
SduI	GDGCHC	1 cut(s)	495
SfaNI	GCATC	5 cut(s)	192, 508, 737, 1216, 1255
Sfr303I	CCGCGG	1 cut(s)	10
SgrBI	CCGCGG	1 cut(s)	10
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	1 cut(s)	1035
SmlI	CTYRAG	2 cut(s)	223, 1235
SmoI	CTYRAG	2 cut(s)	223, 1235
Sse9I	AATT	7 cut(s)	281, 501, 549, 810, 1077, 1247, 1360
SseBI	AGGCCT	1 cut(s)	536
SsiI	CCGC	7 cut(s)	7, 9, 12, 508, 568, 709, 1170
SspMI	CTAG	4 cut(s)	194, 482, 1253, 1405
SstI	GAGCTC	1 cut(s)	495
StuI	AGGCCT	1 cut(s)	536
StyD4I	CCNGG	4 cut(s)	96, 247, 657, 787
TaaI	ACNGT	3 cut(s)	943, 1063, 1291
TaqI	TCGA	3 cut(s)	172, 411, 1309
TasI	AATT	7 cut(s)	281, 501, 549, 810, 1077, 1247, 1360
TauI	GCSGC	2 cut(s)	12, 510
TfiI	GAWTC	3 cut(s)	212, 928, 1139
Tru1I	TTAA	6 cut(s)	240, 297, 1076, 1080, 1179, 1328
Tru9I	TTAA	6 cut(s)	240, 297, 1076, 1080, 1179, 1328
TscAI	CASTG	2 cut(s)	153, 930
TspDTI	ATGAA	4 cut(s)	617, 707, 752, 1283
TspRI	CASTG	2 cut(s)	153, 930
Van91I	CCANNNNNTGG	1 cut(s)	777
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	2 cut(s)	281, 1247
XceI	RCATGY	1 cut(s)	1283
XspI	CTAG	4 cut(s)	194, 482, 1253, 1405
Zsp2I	ATGCAT	1 cut(s)	1387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.