Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007274

Physical Location & Seq

Genomic Coordinates Reverse (-)

24548617 .. 24549858

Gene Structure 1242 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0167700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGCTTCTACACTCTTCCGGAACCTTCTTGAGTAATCCTTATCCAACAGGGACTCCTTGTCATACTAGTATTCCTTATCTGAGTAGAATTGGGTTTCCTTGTCCAAGTAGAACTCCTAGTCCAAGTCAGCTTCAGACTCCTACTCCAACTGGGATTCCTTTTCCTAGTCAAACTGGGAAAACTTCCATTTCTTCATATTTCTCCATTTCTGCGCCACTTAACCCTCAACGTCGACGTAGCTGGCCAATCGGTCATCAAGGCCCAGATTTAGGACACTTTTGGCCAAGAAAGGTCAGCTTTCTGAATATTAATGGTTTCGGTTTGAAGAGCAGTAAGAAACCCAAATCAAAGACTCCGGCAAAGAAGCCCAAAGACAGTGTTCTTGAGCAGAAATCTCCAGCTGAGTTCTTCGCTGAGAACAAGAACATTGCTGGATTTGGTAATCCAGGGAAATGTCTTTATACTACTGTGAGGGAACTTGTGGAGAACTCATTTGATTCGACGGAGTCCATATCGGAGCTTCCTCTGATAGAAATCACAATATACCTCTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

184

Amino Acids

20.27

Weight (kDa)

9.62

Isoelectric Point (pI)

56.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007274)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48800
fragaria_vesca	FvH4_2g19060 FvH4_2g19060 FvH4_2g19060 FvH4_2g19060
malus_domestica	MD05G1175400.v1.1 MD10G1164500.v1.1
prunus_persica	Prupe.8G203100_v2.0.a1
pyrus_communis	pycom05g16220 pycom10g14180
rosa_chinensis	RchiOBHm_Chr6g0284881
rosa_laevigata	RLG00000012705
rosa_multiflora	Rmu_co8481861.1_g000001 Rmu_sc0000686.1_g000019
rosa_roxburghii	Rroxscaffold_7G00184270
rosa_rugosa	Rorug06G0167700 Rorug06G0167800 Rorug06G0167900 Rorug06G0167900 Rorug06G0168000
rosa_samantha	Rh6AG280300 Rh6BG280600 Rh6CG282600 Rh6DG275700
rosa_wichuraiana	Rw6G024090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	232
AccIII	TCCGGA	1 cut(s)	17
AcoI	YGGCCR	2 cut(s)	242, 281
AcuI	CTGAAG	1 cut(s)	116
AfiI	CCNNNNNNNGG	1 cut(s)	269
AgsI	TTSAA	1 cut(s)	325
AhdI	GACNNNNNGTC	1 cut(s)	57
AhlI	ACTAGT	1 cut(s)	65
AjnI	CCWGG	1 cut(s)	445
AloI	GAACNNNNNNTCC	2 cut(s)	103, 135
AluBI	AGCT	5 cut(s)	130, 240, 297, 401, 520
AluI	AGCT	5 cut(s)	130, 240, 297, 401, 520
Aor13HI	TCCGGA	1 cut(s)	17
AoxI	GGCC	3 cut(s)	242, 259, 281
AseI	ATTAAT	1 cut(s)	309
AspLEI	GCGC	1 cut(s)	214
AspS9I	GGNCC	1 cut(s)	260
BalI	TGGCCA	2 cut(s)	244, 283
BciT130I	CCWGG	1 cut(s)	447
BcuI	ACTAGT	1 cut(s)	65
BfaI	CTAG	4 cut(s)	66, 117, 165, 553
Bme1390I	CCNGG	1 cut(s)	447
BmeRI	GACNNNNNGTC	1 cut(s)	57
BmgT120I	GGNCC	1 cut(s)	260
BmiI	GGNNCC	1 cut(s)	22
BmrFI	CCNGG	1 cut(s)	447
BmrI	ACTGGG	2 cut(s)	159, 183
BmuI	ACTGGG	2 cut(s)	159, 183
BpmI	CTGGAG	1 cut(s)	381
BpuEI	CTTGAG	2 cut(s)	49, 404
BsaBI	GATNNNNATC	1 cut(s)	533
BsaJI	CCNNGG	1 cut(s)	446
BsaWI	WCCGGW	1 cut(s)	17
BsaXI	ACNNNNNCTCC	4 cut(s)	37, 67, 127, 157
Bsc4I	CCNNNNNNNGG	1 cut(s)	269
Bse1I	ACTGG	2 cut(s)	154, 178
Bse3DI	GCAATG	1 cut(s)	426
Bse8I	GATNNNNATC	1 cut(s)	533
BseAI	TCCGGA	1 cut(s)	17
BseBI	CCWGG	1 cut(s)	447
BseDI	CCNNGG	1 cut(s)	446
BseJI	GATNNNNATC	1 cut(s)	533
BseLI	CCNNNNNNNGG	1 cut(s)	269
BseMI	GCAATG	1 cut(s)	426
BseMII	CTCAG	3 cut(s)	71, 393, 405
BseNI	ACTGG	2 cut(s)	154, 178
BshFI	GGCC	3 cut(s)	244, 261, 283
BsiSI	CCGG	2 cut(s)	18, 356
BslFI	GGGAC	1 cut(s)	64
BslI	CCNNNNNNNGG	1 cut(s)	269
BsmFI	GGGAC	1 cut(s)	64
BsnI	GGCC	3 cut(s)	244, 261, 283
Bsp13I	TCCGGA	1 cut(s)	17
BspANI	GGCC	3 cut(s)	244, 261, 283
BspCNI	CTCAG	3 cut(s)	72, 394, 406
BspEI	TCCGGA	1 cut(s)	17
BspLI	GGNNCC	1 cut(s)	22
BspQI	GCTCTTC	1 cut(s)	320
BsrDI	GCAATG	1 cut(s)	426
BsrI	ACTGG	2 cut(s)	154, 178
BssECI	CCNNGG	1 cut(s)	446
Bst2UI	CCWGG	1 cut(s)	447
Bst4CI	ACNGT	2 cut(s)	377, 469
Bst6I	CTCTTC	2 cut(s)	19, 320
BstC8I	GCNNGC	1 cut(s)	242
BstDEI	CTNAG	3 cut(s)	80, 402, 414
BstHHI	GCGC	1 cut(s)	214
BstNI	CCWGG	1 cut(s)	447
BstSCI	CCNGG	1 cut(s)	445
BsuRI	GGCC	3 cut(s)	244, 261, 283
BtsIMutI	CAGTG	1 cut(s)	382
Cac8I	GCNNGC	1 cut(s)	242
CfoI	GCGC	1 cut(s)	214
Cfr13I	GGNCC	1 cut(s)	260
CviJI	RGCY	9 cut(s)	130, 240, 244, 261, 283, 297, 367, 401, 520
CviKI_1	RGCY	9 cut(s)	130, 240, 244, 261, 283, 297, 367, 401, 520
DdeI	CTNAG	3 cut(s)	80, 402, 414
DriI	GACNNNNNGTC	1 cut(s)	57
EaeI	YGGCCR	2 cut(s)	242, 281
Eam1104I	CTCTTC	2 cut(s)	19, 320
Eam1105I	GACNNNNNGTC	1 cut(s)	57
EarI	CTCTTC	2 cut(s)	19, 320
Eco57I	CTGAAG	1 cut(s)	116
EcoRII	CCWGG	1 cut(s)	445
FaiI	YATR	5 cut(s)	63, 196, 462, 512, 544
FalI	AAGNNNNNCTT	2 cut(s)	281, 313
FaqI	GGGAC	1 cut(s)	64
FblI	GTMKAC	1 cut(s)	232
FspBI	CTAG	4 cut(s)	66, 117, 165, 553
GlaI	GCGC	1 cut(s)	213
GsuI	CTGGAG	1 cut(s)	381
HaeIII	GGCC	3 cut(s)	244, 261, 283
HapII	CCGG	2 cut(s)	18, 356
HhaI	GCGC	1 cut(s)	214
Hin6I	GCGC	1 cut(s)	212
HinP1I	GCGC	1 cut(s)	212
HincII	GTYRAC	1 cut(s)	233
HindII	GTYRAC	1 cut(s)	233
HinfI	GANTC	6 cut(s)	52, 136, 154, 352, 497, 506
HpaII	CCGG	2 cut(s)	18, 356
Hpy166II	GTNNAC	1 cut(s)	233
Hpy188I	TCNGA	5 cut(s)	81, 135, 303, 517, 528
Hpy188III	TCNNGA	3 cut(s)	18, 28, 383
Hpy8I	GTNNAC	1 cut(s)	233
Hpy99I	CGWCG	3 cut(s)	234, 237, 505
HpyAV	CCTTC	1 cut(s)	34
HpyCH4III	ACNGT	2 cut(s)	377, 469
HpyCH4IV	ACGT	2 cut(s)	229, 235
HpyF3I	CTNAG	3 cut(s)	80, 402, 414
HpySE526I	ACGT	2 cut(s)	229, 235
HspAI	GCGC	1 cut(s)	212
Kpn2I	TCCGGA	1 cut(s)	17
LguI	GCTCTTC	1 cut(s)	320
LmnI	GCTCC	1 cut(s)	517
MaeI	CTAG	4 cut(s)	66, 117, 165, 553
MaeII	ACGT	2 cut(s)	229, 235
MboII	GAAGA	4 cut(s)	6, 183, 337, 400
MlsI	TGGCCA	2 cut(s)	244, 283
MluCI	AATT	1 cut(s)	87
MluNI	TGGCCA	2 cut(s)	244, 283
MlyI	GAGTC	4 cut(s)	46, 130, 346, 515
MmeI	TCCRAC	2 cut(s)	68, 170
MnlI	CCTC	3 cut(s)	234, 465, 534
Mox20I	TGGCCA	2 cut(s)	244, 283
MroI	TCCGGA	1 cut(s)	17
MscI	TGGCCA	2 cut(s)	244, 283
MseI	TTAA	2 cut(s)	219, 309
Msp20I	TGGCCA	2 cut(s)	244, 283
MspA1I	CMGCKG	1 cut(s)	401
MspI	CCGG	2 cut(s)	18, 356
MspR9I	CCNGG	1 cut(s)	447
MvaI	CCWGG	1 cut(s)	447
NlaIV	GGNNCC	1 cut(s)	22
PciSI	GCTCTTC	1 cut(s)	320
PfeI	GAWTC	2 cut(s)	154, 497
PflFI	GACNNNGTC	1 cut(s)	505
PleI	GAGTC	4 cut(s)	46, 130, 346, 514
PpsI	GAGTC	4 cut(s)	46, 130, 346, 514
PshBI	ATTAAT	1 cut(s)	309
Psp6I	CCWGG	1 cut(s)	445
PspGI	CCWGG	1 cut(s)	445
PspN4I	GGNNCC	1 cut(s)	22
PspPI	GGNCC	1 cut(s)	260
PsyI	GACNNNGTC	1 cut(s)	505
PvuII	CAGCTG	1 cut(s)	401
SalI	GTCGAC	1 cut(s)	231
SapI	GCTCTTC	1 cut(s)	320
SaqAI	TTAA	2 cut(s)	219, 309
Sau96I	GGNCC	1 cut(s)	260
SchI	GAGTC	4 cut(s)	46, 130, 346, 515
ScrFI	CCNGG	1 cut(s)	447
SgrDI	CGTCGACG	1 cut(s)	231
SmlI	CTYRAG	2 cut(s)	28, 383
SmoI	CTYRAG	2 cut(s)	28, 383
SpeI	ACTAGT	1 cut(s)	65
Sse9I	AATT	1 cut(s)	87
SspI	AATATT	1 cut(s)	307
SspMI	CTAG	4 cut(s)	66, 117, 165, 553
StyD4I	CCNGG	1 cut(s)	445
TaaI	ACNGT	2 cut(s)	377, 469
TaiI	ACGT	2 cut(s)	232, 238
TaqI	TCGA	2 cut(s)	232, 500
TaqII	GACCGA	1 cut(s)	239
TasI	AATT	1 cut(s)	87
TfiI	GAWTC	2 cut(s)	154, 497
Tru1I	TTAA	2 cut(s)	219, 309
Tru9I	TTAA	2 cut(s)	219, 309
TscAI	CASTG	1 cut(s)	382
TspDTI	ATGAA	1 cut(s)	183
TspGWI	ACGGA	1 cut(s)	518
TspRI	CASTG	1 cut(s)	382
Tth111I	GACNNNGTC	1 cut(s)	505
VspI	ATTAAT	1 cut(s)	309
XmiI	GTMKAC	1 cut(s)	232
XspI	CTAG	4 cut(s)	66, 117, 165, 553

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.