Rorug06G0167900

Belongs to the NPH3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0007274
Physical Location & Seq
Forward (+)
24608320 .. 24663393
55074 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0167900.1

Sequence Viewer

Length: 1614 bp
ATGTTGCAGCTTTCAATTCCAAGAGTGAGAAATCTCAAGGCTTTTAGAGCGACGATCTTTGCTGTCCGTAGCTCTCATTTCTCCACAGCGGCTGAGCCATCCTCGTCTTCTACTCCTCCGAGAGTTCCCAATCTAATTGGAGGTGCTTTTGTTAATTCACAATCCTCTGCGTCCATAGATGTCATAAATCCTGCCACGCAACAAGTTGTTTCGCAAGTTCCGTTGACCACAAATGAGGAGTTCAAAGCGGCAGTGTCTTCAGCAAAGAAGGCTTTTCAAACATGGCGTAACACACCCGTTACGACACGTCAGCGTGTCATGTTTAAGCTGCAAGAGCTTATCCGGAGAGACATTGATAAGTTAGCCTTGAATATTACTACAGAACAGGGGAAGACGTTAAAGGATGCGCATGGTGATGTGTTTCGTGGGCTAGAGGTGGTAGAACATGCTTGTGGCACAGCAACTCTTCAAATGGGGGAATATGTTTCTAATGTATCAAATGGAATTGACACGTATAGCATTAGAGAGCCACTTGGTGTTTGTGCTGGGATTTGTCCGTTCAACTTTCCGGCAATGATTCCATTATGGATGTTCCCAATTGCAGTTGCCTGTGGGAATACCTTTATCCTAAAGCCATCAGAAAAAGATCCAGGTGCTTCTGTACTGCTAGCAGAGTTGGCAATGGAGGCTGGTTTGCCTGATGGTGTCTTAAATATTGTCCACGGAACCAATGATATTGTTAATGCAATTTGTGATGATGATGATATCAGAGCTGTATCATTTGTGGGTTCTAATACAGCTGGCATGCATATATATTCAAGAGCATCAGCTAAAGGGAAACGCGTTCAGTCCAATATGGGGGCAAAAAATCATGGGATTGTCATGCCTGATGCAAGTCCTGATGCTACTTTGAGTGCTCTAGTTGCTGCTGGTTTTGGTGCTGCAGGACAGAGGTGCATGGCACTCAGCACAGTTGTTTTCGTTGGAGGTTCAAAGTCATGGGAGAATAAACTTGTGGAGTACGGAAAATCACTGAAAGTAAGTTCAGGAACAGAACCTGATGCTGACCTTGGTCCTGTGATTAGCAAGCAAGCCAAGGAGCGCATATGCAATCTAATCCAATCTGGTGTTGAAAGTGGTGCGAAGCTATTGCTGGATGGGCGAGATATAGTGGTCCCAGGTTATGAGCATGGCAATTTTATTGGCCCCACTATCTTATCAAATGTTACAGCTGACATGGAGTGCTACAAGGAAGAAATTTTTGGTCCAGTTCTTCTTTGCTTGGAGGCTGACAGTCTAGAAGAGGCAATAAGCATTGTTAACAGAAACAGATATGGCAATGGCGCTTCTATATTTACTACATCTGGGGTAGCTGCTAGGAAATTTCAGACGGAGATTGAGGCTGGGCAGGTTGGTATCAACGTTCCTATTCCAGTTCCCTTGCCCTTTTTCTCATTTACTGGCAGCAAGGCATCTTTTGCAGGGGATTTGAACTTCTATGGCAAGGCAGGTGTTAACTTTTTCACCCAGATCAAAACAGTAACTCAGCAGTGGAAAAGTTTACCAGGCAGCAATGTAGTTAATCTTGCCATGCCAACTTCTCAAAAGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BTB NPH3

Protein Analysis

537

Amino Acids

57.26

Weight (kDa)

7.04

Isoelectric Point (pI)

35.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldedh PF00171 50 - 514 7.5e-144 Aldehyde dehydrogenase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1499
Acc16I TGCGCA 1 cut(s) 408
Acc36I ACCTGC 2 cut(s) 1399, 1499
AccII CGCG 1 cut(s) 843
AccIII TCCGGA 1 cut(s) 342
AciI CCGC 2 cut(s) 89, 248
AclI AACGTT 1 cut(s) 1422
AclWI GGATC 1 cut(s) 641
AcsI RAATTY 2 cut(s) 1257, 1382
AcuI CTGAAG 1 cut(s) 243
AdeI CACNNNGTG 1 cut(s) 536
AfaI GTAC 2 cut(s) 663, 1022
AfiI CCNNNNNNNGG 1 cut(s) 858
AflIII ACRYGT 3 cut(s) 305, 510, 841
AjiI CACGTC 1 cut(s) 308
AjnI CCWGG 3 cut(s) 649, 1177, 1564
AjuI GAANNNNNNNTTGG 2 cut(s) 1245, 1277
Alw21I GWGCWC 1 cut(s) 919
Alw26I GTCTC 1 cut(s) 342
AlwI GGATC 1 cut(s) 641
AlwNI CAGNNNCTG 2 cut(s) 92, 1058
Aor13HI TCCGGA 1 cut(s) 342
AoxI GGCC 1 cut(s) 1204
ApeKI GCWGC 7 cut(s) 7, 328, 926, 941, 1373, 1464, 1569
ApoI RAATTY 2 cut(s) 1257, 1382
AspLEI GCGC 3 cut(s) 409, 1104, 1346
AspS9I GGNCC 4 cut(s) 1073, 1174, 1205, 1265
AsuHPI GGTGA 2 cut(s) 425, 1516
AsuNHI GCTAGC 1 cut(s) 667
AvaII GGWCC 3 cut(s) 1073, 1174, 1265
BbsI GAAGAC 3 cut(s) 99, 249, 398
Bbv12I GWGCWC 1 cut(s) 919
BbvI GCAGC 7 cut(s) 19, 315, 913, 928, 1360, 1476, 1581
BccI CCATC 4 cut(s) 106, 643, 695, 1151
BcgI CGANNNNNNTGC 2 cut(s) 1132, 1166
BciT130I CCWGG 3 cut(s) 651, 1179, 1566
BcoDI GTCTC 1 cut(s) 342
BfaI CTAG 5 cut(s) 431, 668, 920, 1298, 1377
BfmI CTRYAG 2 cut(s) 378, 942
BfoI RGCGCY 1 cut(s) 1347
BfuAI ACCTGC 2 cut(s) 1399, 1499
BisI GCNGC 9 cut(s) 8, 90, 249, 329, 927, 942, 1374, 1465, 1570
BlpI GCTNAGC 1 cut(s) 93
BlsI GCNGC 9 cut(s) 9, 91, 250, 330, 928, 943, 1375, 1466, 1571
Bme1390I CCNGG 3 cut(s) 651, 1179, 1566
Bme18I GGWCC 3 cut(s) 1073, 1174, 1265
BmgBI CACGTC 1 cut(s) 308
BmgT120I GGNCC 4 cut(s) 1073, 1174, 1205, 1265
BmiI GGNNCC 3 cut(s) 727, 1176, 1207
BmrFI CCNGG 3 cut(s) 651, 1179, 1566
BmsI GCATC 6 cut(s) 394, 833, 880, 892, 1051, 1481
BmtI GCTAGC 1 cut(s) 671
BoxI GACNNNNGTC 1 cut(s) 1071
BpiI GAAGAC 3 cut(s) 99, 249, 398
BplI GAGNNNNNCTC 2 cut(s) 86, 118
Bpu1102I GCTNAGC 1 cut(s) 93
BpuEI CTTGAG 1 cut(s) 20
BsaAI YACGTR 1 cut(s) 513
BsaJI CCNNGG 4 cut(s) 721, 1069, 1095, 1177
BsaWI WCCGGW 1 cut(s) 342
Bsc4I CCNNNNNNNGG 1 cut(s) 858
Bse1I ACTGG 3 cut(s) 1268, 1433, 1465
Bse3DI GCAATG 4 cut(s) 579, 687, 1345, 1579
BseAI TCCGGA 1 cut(s) 342
BseBI CCWGG 3 cut(s) 651, 1179, 1566
BseDI CCNNGG 4 cut(s) 721, 1069, 1095, 1177
BseGI GGATG 4 cut(s) 98, 409, 594, 1162
BseLI CCNNNNNNNGG 1 cut(s) 858
BseMI GCAATG 4 cut(s) 579, 687, 1345, 1579
BseMII CTCAG 3 cut(s) 84, 979, 1559
BseNI ACTGG 3 cut(s) 1268, 1433, 1465
BseRI GAGGAG 2 cut(s) 105, 251
BseXI GCAGC 7 cut(s) 19, 315, 913, 928, 1360, 1476, 1581
BseYI CCCAGC 2 cut(s) 545, 1403
Bsh1236I CGCG 1 cut(s) 843
BshFI GGCC 1 cut(s) 1206
BsiHKAI GWGCWC 1 cut(s) 919
BsiSI CCGG 2 cut(s) 343, 569
BslFI GGGAC 1 cut(s) 1160
BslI CCNNNNNNNGG 1 cut(s) 858
BsmAI GTCTC 1 cut(s) 342
BsmFI GGGAC 1 cut(s) 1160
BsnI GGCC 1 cut(s) 1206
Bsp1286I GDGCHC 1 cut(s) 919
Bsp13I TCCGGA 1 cut(s) 342
Bsp143I GATC 3 cut(s) 54, 646, 1530
Bsp1720I GCTNAGC 1 cut(s) 93
BspACI CCGC 2 cut(s) 89, 248
BspANI GGCC 1 cut(s) 1206
BspCNI CTCAG 3 cut(s) 85, 978, 1558
BspEI TCCGGA 1 cut(s) 342
BspFNI CGCG 1 cut(s) 843
BspLI GGNNCC 3 cut(s) 727, 1176, 1207
BspMAI CTGCAG 1 cut(s) 946
BspMI ACCTGC 2 cut(s) 1399, 1499
BspOI GCTAGC 1 cut(s) 671
BspPI GGATC 1 cut(s) 641
BsrDI GCAATG 4 cut(s) 579, 687, 1345, 1579
BsrI ACTGG 3 cut(s) 1268, 1433, 1465
BssECI CCNNGG 4 cut(s) 721, 1069, 1095, 1177
BssMI GATC 3 cut(s) 54, 646, 1530
BssT1I CCWWGG 2 cut(s) 1069, 1095
Bst2UI CCWGG 3 cut(s) 651, 1179, 1566
Bst4CI ACNGT 3 cut(s) 973, 1295, 1540
Bst6I CTCTTC 2 cut(s) 471, 1296
BstAPI GCANNNNNTGC 1 cut(s) 1478
BstBAI YACGTR 1 cut(s) 513
BstC8I GCNNGC 5 cut(s) 669, 802, 806, 1088, 1092
BstDEI CTNAG 3 cut(s) 93, 965, 1545
BstDSI CCRYGG 1 cut(s) 721
BstF5I GGATG 4 cut(s) 98, 409, 594, 1162
BstFNI CGCG 1 cut(s) 843
BstH2I RGCGCY 1 cut(s) 1347
BstHHI GCGC 3 cut(s) 409, 1104, 1346
BstKTI GATC 3 cut(s) 57, 649, 1533
BstMAI GTCTC 1 cut(s) 342
BstMBI GATC 3 cut(s) 54, 646, 1530
BstMWI GCNNNNNNNGC 8 cut(s) 47, 269, 334, 677, 686, 923, 1159, 1478
BstNI CCWGG 3 cut(s) 651, 1179, 1566
BstNSI RCATGY 2 cut(s) 449, 808
BstPAI GACNNNNGTC 1 cut(s) 1071
BstSCI CCNGG 3 cut(s) 649, 1177, 1564
BstSFI CTRYAG 2 cut(s) 378, 942
BstUI CGCG 1 cut(s) 843
BstV1I GCAGC 7 cut(s) 19, 315, 913, 928, 1360, 1476, 1581
BstV2I GAAGAC 3 cut(s) 99, 249, 398
BstX2I RGATCY 1 cut(s) 646
BstYI RGATCY 1 cut(s) 646
BsuRI GGCC 1 cut(s) 1206
BtgI CCRYGG 1 cut(s) 721
BtrI CACGTC 1 cut(s) 308
BtsCI GGATG 4 cut(s) 98, 409, 594, 1162
BtsI GCAGTG 2 cut(s) 258, 1556
BtsIMutI CAGTG 3 cut(s) 258, 1031, 1556
BveI ACCTGC 2 cut(s) 1399, 1499
Cac8I GCNNGC 5 cut(s) 669, 802, 806, 1088, 1092
CaiI CAGNNNCTG 2 cut(s) 92, 1058
CfoI GCGC 3 cut(s) 409, 1104, 1346
Cfr13I GGNCC 4 cut(s) 1073, 1174, 1205, 1265
CseI GACGC 1 cut(s) 159
Csp6I GTAC 2 cut(s) 662, 1021
CviQI GTAC 2 cut(s) 662, 1021
DdeI CTNAG 3 cut(s) 93, 965, 1545
DpnI GATC 3 cut(s) 56, 648, 1532
DpnII GATC 3 cut(s) 54, 646, 1530
DraIII CACNNNGTG 1 cut(s) 536
Eam1104I CTCTTC 2 cut(s) 471, 1296
EarI CTCTTC 2 cut(s) 471, 1296
Eco130I CCWWGG 2 cut(s) 1069, 1095
Eco32I GATATC 1 cut(s) 766
Eco47I GGWCC 3 cut(s) 1073, 1174, 1265
Eco57I CTGAAG 1 cut(s) 243
EcoRII CCWGG 3 cut(s) 649, 1177, 1564
EcoRV GATATC 1 cut(s) 766
EcoT14I CCWWGG 2 cut(s) 1069, 1095
EcoT22I ATGCAT 1 cut(s) 810
ErhI CCWWGG 2 cut(s) 1069, 1095
FalI AAGNNNNNCTT 2 cut(s) 350, 382
FaqI GGGAC 1 cut(s) 1160
FauNDI CATATG 1 cut(s) 1106
Fnu4HI GCNGC 9 cut(s) 8, 90, 249, 329, 927, 942, 1374, 1465, 1570
FokI GGATG 4 cut(s) 85, 416, 601, 1169
Fsp4HI GCNGC 9 cut(s) 8, 90, 249, 329, 927, 942, 1374, 1465, 1570
FspAI RTGCGCAY 1 cut(s) 408
FspBI CTAG 5 cut(s) 431, 668, 920, 1298, 1377
FspI TGCGCA 1 cut(s) 408
GlaI GCGC 3 cut(s) 408, 1103, 1345
GluI GCNGC 9 cut(s) 8, 90, 249, 329, 927, 942, 1374, 1465, 1570
GsaI CCCAGC 2 cut(s) 549, 1407
HaeII RGCGCY 1 cut(s) 1347
HaeIII GGCC 1 cut(s) 1206
HapII CCGG 2 cut(s) 343, 569
HgaI GACGC 1 cut(s) 159
HhaI GCGC 3 cut(s) 409, 1104, 1346
Hin6I GCGC 3 cut(s) 407, 1102, 1344
HinP1I GCGC 3 cut(s) 407, 1102, 1344
HincII GTYRAC 3 cut(s) 225, 1321, 1516
HindII GTYRAC 3 cut(s) 225, 1321, 1516
HinfI GANTC 1 cut(s) 577
HpaI GTTAAC 2 cut(s) 1321, 1516
HpaII CCGG 2 cut(s) 343, 569
HphI GGTGA 2 cut(s) 425, 1516
Hpy166II GTNNAC 5 cut(s) 225, 721, 1321, 1516, 1562
Hpy188I TCNGA 4 cut(s) 120, 640, 770, 1389
Hpy188III TCNNGA 5 cut(s) 343, 819, 899, 1047, 1298
Hpy8I GTNNAC 5 cut(s) 225, 721, 1321, 1516, 1562
Hpy99I CGWCG 1 cut(s) 55
HpyAV CCTTC 1 cut(s) 262
HpyCH4III ACNGT 3 cut(s) 973, 1295, 1540
HpyCH4IV ACGT 4 cut(s) 307, 395, 512, 1422
HpyF10VI GCNNNNNNNGC 8 cut(s) 47, 269, 334, 677, 686, 923, 1159, 1478
HpyF3I CTNAG 3 cut(s) 93, 965, 1545
HpySE526I ACGT 4 cut(s) 307, 395, 512, 1422
HspAI GCGC 3 cut(s) 407, 1102, 1344
Kpn2I TCCGGA 1 cut(s) 342
KspAI GTTAAC 2 cut(s) 1321, 1516
Kzo9I GATC 3 cut(s) 54, 646, 1530
LmnI GCTCC 1 cut(s) 1099
Lsp1109I GCAGC 7 cut(s) 19, 315, 913, 928, 1360, 1476, 1581
LweI GCATC 6 cut(s) 394, 833, 880, 892, 1051, 1481
MaeI CTAG 5 cut(s) 431, 668, 920, 1298, 1377
MaeII ACGT 4 cut(s) 307, 395, 512, 1422
MaeIII GTNAC 4 cut(s) 287, 298, 1225, 1540
MalI GATC 3 cut(s) 56, 648, 1532
MboI GATC 3 cut(s) 54, 646, 1530
MboII GAAGA 7 cut(s) 99, 249, 403, 458, 1265, 1265, 1313
MfeI CAATTG 1 cut(s) 597
MflI RGATCY 1 cut(s) 646
MhlI GDGCHC 1 cut(s) 919
MluCI AATT 9 cut(s) 15, 135, 154, 504, 597, 747, 1195, 1257, 1382
MluI ACGCGT 1 cut(s) 841
MmeI TCCRAC 1 cut(s) 964
Mph1103I ATGCAT 1 cut(s) 810
MroI TCCGGA 1 cut(s) 342
MseI TTAA 8 cut(s) 153, 324, 398, 710, 741, 1320, 1515, 1581
MslI CAYNNNNRTG 2 cut(s) 414, 450
MspA1I CMGCKG 3 cut(s) 89, 800, 1232
MspI CCGG 2 cut(s) 343, 569
MspR9I CCNGG 3 cut(s) 651, 1179, 1566
MunI CAATTG 1 cut(s) 597
MvaI CCWGG 3 cut(s) 651, 1179, 1566
MvnI CGCG 1 cut(s) 843
MwoI GCNNNNNNNGC 8 cut(s) 47, 269, 334, 677, 686, 923, 1159, 1478
NdeI CATATG 1 cut(s) 1106
NdeII GATC 3 cut(s) 54, 646, 1530
NheI GCTAGC 1 cut(s) 667
NlaIV GGNNCC 3 cut(s) 727, 1176, 1207
NsbI TGCGCA 1 cut(s) 408
NsiI ATGCAT 1 cut(s) 810
NspI RCATGY 2 cut(s) 449, 808
PaeI GCATGC 1 cut(s) 808
PaqCI CACCTGC 1 cut(s) 1499
PcsI WCGNNNNNNNCGW 1 cut(s) 218
PfeI GAWTC 1 cut(s) 577
PkrI GCNGC 9 cut(s) 9, 91, 250, 330, 928, 943, 1375, 1466, 1571
Ppu21I YACGTR 1 cut(s) 513
PshAI GACNNNNGTC 1 cut(s) 1071
Psp1406I AACGTT 1 cut(s) 1422
Psp6I CCWGG 3 cut(s) 649, 1177, 1564
PspFI CCCAGC 2 cut(s) 545, 1403
PspGI CCWGG 3 cut(s) 649, 1177, 1564
PspN4I GGNNCC 3 cut(s) 727, 1176, 1207
PspPI GGNCC 4 cut(s) 1073, 1174, 1205, 1265
PstI CTGCAG 1 cut(s) 946
PstNI CAGNNNCTG 2 cut(s) 92, 1058
PsuI RGATCY 1 cut(s) 646
PvuII CAGCTG 2 cut(s) 800, 1232
RsaI GTAC 2 cut(s) 663, 1022
RsaNI GTAC 2 cut(s) 662, 1021
RseI CAYNNNNRTG 2 cut(s) 414, 450
SaqAI TTAA 8 cut(s) 153, 324, 398, 710, 741, 1320, 1515, 1581
SatI GCNGC 9 cut(s) 8, 90, 249, 329, 927, 942, 1374, 1465, 1570
Sau3AI GATC 3 cut(s) 54, 646, 1530
Sau96I GGNCC 4 cut(s) 1073, 1174, 1205, 1265
ScrFI CCNGG 3 cut(s) 651, 1179, 1566
SduI GDGCHC 1 cut(s) 919
SfaNI GCATC 6 cut(s) 394, 833, 880, 892, 1051, 1481
SfcI CTRYAG 2 cut(s) 378, 942
SinI GGWCC 3 cut(s) 1073, 1174, 1265
SmiMI CAYNNNNRTG 2 cut(s) 414, 450
SmlI CTYRAG 1 cut(s) 35
SmoI CTYRAG 1 cut(s) 35
SphI GCATGC 1 cut(s) 808
Sse9I AATT 9 cut(s) 15, 135, 154, 504, 597, 747, 1195, 1257, 1382
SsiI CCGC 2 cut(s) 89, 248
SspI AATATT 2 cut(s) 373, 715
SspMI CTAG 5 cut(s) 431, 668, 920, 1298, 1377
StyD4I CCNGG 3 cut(s) 649, 1177, 1564
StyI CCWWGG 2 cut(s) 1069, 1095
TaaI ACNGT 3 cut(s) 973, 1295, 1540
TaiI ACGT 4 cut(s) 310, 398, 515, 1425
TasI AATT 9 cut(s) 15, 135, 154, 504, 597, 747, 1195, 1257, 1382
TatI WGTACW 1 cut(s) 661
TauI GCSGC 2 cut(s) 92, 251
TfiI GAWTC 1 cut(s) 577
Tru1I TTAA 8 cut(s) 153, 324, 398, 710, 741, 1320, 1515, 1581
Tru9I TTAA 8 cut(s) 153, 324, 398, 710, 741, 1320, 1515, 1581
TscAI CASTG 3 cut(s) 258, 1038, 1556
TseI GCWGC 7 cut(s) 7, 328, 926, 941, 1373, 1464, 1569
TspGWI ACGGA 6 cut(s) 56, 210, 546, 738, 1038, 1406
TspRI CASTG 3 cut(s) 258, 1038, 1556
VpaK11BI GGWCC 3 cut(s) 1073, 1174, 1265
XapI RAATTY 2 cut(s) 1257, 1382
XbaI TCTAGA 1 cut(s) 1297
XceI RCATGY 2 cut(s) 449, 808
XspI CTAG 5 cut(s) 431, 668, 920, 1298, 1377
Zsp2I ATGCAT 1 cut(s) 810
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.