Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0006668

Physical Location & Seq

Genomic Coordinates Forward (+)

19225621 .. 19227802

Gene Structure 2182 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGAAATCTGTTCATTTCTCAATCCACTCGGCCCCAATTTTTTCCTTCAACCCTAACAATCTCACTTCATCATCTTCTTCTTCTTCTCAGATCGCTCTCCTCCGCCCCTGCAAATTCAGCTCCCTTTCTCTCCGCTCCACTTCCAAGCCCTCCCGCTTAATCACGCTCTGCGCTCCCAATTCCGCTAAAGCGACGTCGTCCCGGTCCGAATCGGCTGCAGCGGAGCCCAGCAATGAAGCTTTTATTCAAGCTCTAAACGACACGTCGGAAAGTCAGTGGACTGTGGAGGTCGGAAACCCTAGCGTTCCGAATCCGTCGGTGGCCAGATTGAGCTTGAGCGACCAGGCTTTCTTCCTCTTGGCCTTCATCGCGTGCACGACTTCTGTGGCATTTACGAGCCTTGTGATTGCAGCTGTTCCGACGCTATGGGCAATGGGGAAAGCTGCAATATCTCTTTCAAAGCTGGCGGATACAGCTTGTGAAGAACTCCCTAGTACTATGGCTGCCGTTAGGCTTTCAGGCATGGAAATAAGTGATCTTACGCTGGAACTGAATGATCTAAGTCAAGAGATAGCTGATGGGGTCAGCAAGTCCACTCAAGCCGTTCAAGCAGCAGAAGCTGGGATTCGGCAGATTGGTACACTTGCACATCAGCAGACAATGTCAATGATACAGGAGAGGGCGAATCTTCCCATCATCTCTTTGCAACCTGCTGTTGTTGGAGCAGCAAAGAAGACCTCCCATGTTGTCGGTCAAGCTACTAGGAACTTGATCAATATAATTTCTCGAAGGGACAACTCTGAGAATGAGGAGGACGCTGGAATCGATAGGTTGGAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

281

Amino Acids

29.65

Weight (kDa)

5.62

Isoelectric Point (pI)

50.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006668)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G08530 AT1G08530 AT1G08530
fragaria_vesca	FvH4_2g21680
malus_domestica	MD10G1185200.v1.1
prunus_persica	Prupe.1G354200_v2.0.a1 Prupe.1G354200_v2.0.a1 Prupe.1G354200_v2.0.a1 Prupe.1G354200_v2.0.a1 Prupe.8G225000_v2.0.a1
pyrus_communis	pycom10g16030
rosa_chinensis	RchiOBHm_Chr6g0288361
rosa_laevigata	RLG00000012413 RLG00000029638
rosa_multiflora	Rmu_sc0001038.1_g000008
rosa_roxburghii	Rroxscaffold_7G00180130
rosa_rugosa	Rorug06G0195800 Rorug06G0195900
rosa_samantha	Rh6AG306800 Rh6BG312800 Rh6CG320700 Rh6DG306000 Rh7DG490500
rosa_wichuraiana	Rw0G011110 Rw1G016060 Rw6G026530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	197
Acc36I	ACCTGC	1 cut(s)	718
AccBSI	CCGCTC	1 cut(s)	135
AccII	CGCG	1 cut(s)	371
AciI	CCGC	6 cut(s)	103, 133, 154, 183, 221, 467
AcoI	YGGCCR	1 cut(s)	321
AcsI	RAATTY	2 cut(s)	113, 837
AcyI	GRCGYC	1 cut(s)	194
AfaI	GTAC	2 cut(s)	496, 640
AflIII	ACRYGT	1 cut(s)	261
AgsI	TTSAA	4 cut(s)	49, 248, 459, 608
AjiI	CACGTC	1 cut(s)	264
AjnI	CCWGG	1 cut(s)	342
Alw21I	GWGCWC	1 cut(s)	377
Alw44I	GTGCAC	1 cut(s)	373
AlwNI	CAGNNNCTG	1 cut(s)	620
AoxI	GGCC	3 cut(s)	30, 321, 360
ApaLI	GTGCAC	1 cut(s)	373
ApeKI	GCWGC	7 cut(s)	215, 218, 410, 443, 503, 611, 725
ApoI	RAATTY	2 cut(s)	113, 837
AspLEI	GCGC	1 cut(s)	173
AspS9I	GGNCC	2 cut(s)	31, 204
AsuC2I	CCSGG	1 cut(s)	202
AvaII	GGWCC	1 cut(s)	204
BaeGI	GKGCMC	1 cut(s)	377
BalI	TGGCCA	1 cut(s)	323
BanII	GRGCYC	1 cut(s)	228
BbsI	GAAGAC	1 cut(s)	740
Bbv12I	GWGCWC	1 cut(s)	377
BbvI	GCAGC	7 cut(s)	202, 230, 422, 430, 490, 623, 737
BccI	CCATC	2 cut(s)	572, 701
BceAI	ACGGC	2 cut(s)	491, 587
BcgI	CGANNNNNNTGC	2 cut(s)	197, 231
BciT130I	CCWGG	1 cut(s)	344
BciVI	GTATCC	1 cut(s)	463
BclI	TGATCA	1 cut(s)	771
BcnI	CCSGG	1 cut(s)	202
BfaI	CTAG	3 cut(s)	300, 492, 762
BfmI	CTRYAG	1 cut(s)	216
BfuAI	ACCTGC	1 cut(s)	718
BfuI	GTATCC	1 cut(s)	463
BisI	GCNGC	7 cut(s)	216, 219, 411, 444, 504, 612, 726
BlsI	GCNGC	7 cut(s)	217, 220, 412, 445, 505, 613, 727
BmcAI	AGTACT	1 cut(s)	496
Bme1390I	CCNGG	2 cut(s)	202, 344
Bme18I	GGWCC	1 cut(s)	204
BmgBI	CACGTC	1 cut(s)	264
BmgT120I	GGNCC	2 cut(s)	31, 204
BmiI	GGNNCC	2 cut(s)	33, 225
BmrFI	CCNGG	2 cut(s)	202, 344
BpiI	GAAGAC	1 cut(s)	740
BpuEI	CTTGAG	2 cut(s)	355, 582
BpuMI	CCSGG	1 cut(s)	202
Bsa29I	ATCGAT	1 cut(s)	825
BsaHI	GRCGYC	1 cut(s)	194
Bse3DI	GCAATG	2 cut(s)	238, 438
BseBI	CCWGG	1 cut(s)	344
BseCI	ATCGAT	1 cut(s)	825
BseMI	GCAATG	2 cut(s)	238, 438
BseMII	CTCAG	2 cut(s)	101, 792
BseRI	GAGGAG	2 cut(s)	89, 824
BseSI	GKGCMC	1 cut(s)	377
BseXI	GCAGC	7 cut(s)	202, 230, 422, 430, 490, 623, 737
BseYI	CCCAGC	2 cut(s)	227, 620
Bsh1236I	CGCG	1 cut(s)	371
BshFI	GGCC	3 cut(s)	32, 323, 362
BshVI	ATCGAT	1 cut(s)	825
BsiHKAI	GWGCWC	1 cut(s)	377
BsiSI	CCGG	1 cut(s)	202
BslFI	GGGAC	2 cut(s)	184, 806
BsmFI	GGGAC	2 cut(s)	184, 806
BsnI	GGCC	3 cut(s)	32, 323, 362
Bsp1286I	GDGCHC	2 cut(s)	228, 377
Bsp143I	GATC	4 cut(s)	90, 535, 556, 771
BspACI	CCGC	6 cut(s)	103, 133, 154, 183, 221, 467
BspANI	GGCC	3 cut(s)	32, 323, 362
BspCNI	CTCAG	2 cut(s)	100, 793
BspDI	ATCGAT	1 cut(s)	825
BspFNI	CGCG	1 cut(s)	371
BspLI	GGNNCC	2 cut(s)	33, 225
BspMAI	CTGCAG	1 cut(s)	220
BspMI	ACCTGC	1 cut(s)	718
BsrBI	CCGCTC	1 cut(s)	135
BsrDI	GCAATG	2 cut(s)	238, 438
BssMI	GATC	4 cut(s)	90, 535, 556, 771
BssNI	GRCGYC	1 cut(s)	194
Bst2UI	CCWGG	1 cut(s)	344
Bst4CI	ACNGT	1 cut(s)	283
BstACI	GRCGYC	1 cut(s)	194
BstC8I	GCNNGC	2 cut(s)	373, 465
BstDEI	CTNAG	3 cut(s)	87, 560, 801
BstFNI	CGCG	1 cut(s)	371
BstHHI	GCGC	1 cut(s)	173
BstKTI	GATC	4 cut(s)	93, 538, 559, 774
BstMBI	GATC	4 cut(s)	90, 535, 556, 771
BstMWI	GCNNNNNNNGC	5 cut(s)	117, 368, 473, 608, 617
BstNI	CCWGG	1 cut(s)	344
BstSCI	CCNGG	2 cut(s)	200, 342
BstSFI	CTRYAG	1 cut(s)	216
BstSLI	GKGCMC	1 cut(s)	377
BstUI	CGCG	1 cut(s)	371
BstV1I	GCAGC	7 cut(s)	202, 230, 422, 430, 490, 623, 737
BstV2I	GAAGAC	1 cut(s)	740
Bsu15I	ATCGAT	1 cut(s)	825
BsuI	GTATCC	1 cut(s)	463
BsuRI	GGCC	3 cut(s)	32, 323, 362
BsuTUI	ATCGAT	1 cut(s)	825
BtgZI	GCGATG	1 cut(s)	352
BtrI	CACGTC	1 cut(s)	264
BtsIMutI	CAGTG	1 cut(s)	281
BveI	ACCTGC	1 cut(s)	718
Cac8I	GCNNGC	2 cut(s)	373, 465
CaiI	CAGNNNCTG	1 cut(s)	620
CfoI	GCGC	1 cut(s)	173
Cfr13I	GGNCC	2 cut(s)	31, 204
ClaI	ATCGAT	1 cut(s)	825
CpoI	CGGWCCG	1 cut(s)	204
CseI	GACGC	2 cut(s)	430, 824
Csp6I	GTAC	2 cut(s)	495, 639
CspI	CGGWCCG	1 cut(s)	204
CviAII	CATG	2 cut(s)	523, 743
CviQI	GTAC	2 cut(s)	495, 639
DdeI	CTNAG	3 cut(s)	87, 560, 801
DpnI	GATC	4 cut(s)	92, 537, 558, 773
DpnII	GATC	4 cut(s)	90, 535, 556, 771
EaeI	YGGCCR	1 cut(s)	321
EciI	GGCGGA	2 cut(s)	92, 482
Eco24I	GRGCYC	1 cut(s)	228
Eco47I	GGWCC	1 cut(s)	204
EcoRII	CCWGG	1 cut(s)	342
EcoT38I	GRGCYC	1 cut(s)	228
FaeI	CATG	2 cut(s)	526, 746
FaiI	YATR	5 cut(s)	427, 500, 524, 744, 779
FaqI	GGGAC	2 cut(s)	184, 806
FatI	CATG	2 cut(s)	522, 742
FauI	CCCGC	1 cut(s)	161
FbaI	TGATCA	1 cut(s)	771
Fnu4HI	GCNGC	7 cut(s)	216, 219, 411, 444, 504, 612, 726
FriOI	GRGCYC	1 cut(s)	228
Fsp4HI	GCNGC	7 cut(s)	216, 219, 411, 444, 504, 612, 726
FspBI	CTAG	3 cut(s)	300, 492, 762
GlaI	GCGC	1 cut(s)	172
GluI	GCNGC	7 cut(s)	216, 219, 411, 444, 504, 612, 726
GsaI	CCCAGC	2 cut(s)	231, 624
HaeIII	GGCC	3 cut(s)	32, 323, 362
HapII	CCGG	1 cut(s)	202
HgaI	GACGC	2 cut(s)	430, 824
HhaI	GCGC	1 cut(s)	173
Hin1I	GRCGYC	1 cut(s)	194
Hin1II	CATG	2 cut(s)	526, 746
Hin6I	GCGC	1 cut(s)	171
HinP1I	GCGC	1 cut(s)	171
HindIII	AAGCTT	1 cut(s)	237
HinfI	GANTC	5 cut(s)	209, 310, 625, 685, 822
HpaII	CCGG	1 cut(s)	202
Hpy166II	GTNNAC	4 cut(s)	279, 375, 594, 641
Hpy188I	TCNGA	7 cut(s)	90, 208, 268, 293, 309, 420, 802
Hpy188III	TCNNGA	2 cut(s)	566, 786
Hpy8I	GTNNAC	4 cut(s)	279, 375, 594, 641
Hpy99I	CGWCG	5 cut(s)	196, 199, 268, 319, 424
HpyAV	CCTTC	3 cut(s)	55, 373, 783
HpyCH4III	ACNGT	1 cut(s)	283
HpyCH4IV	ACGT	2 cut(s)	194, 263
HpyCH4V	TGCA	7 cut(s)	111, 218, 375, 410, 446, 647, 706
HpyF10VI	GCNNNNNNNGC	5 cut(s)	117, 368, 473, 608, 617
HpyF3I	CTNAG	3 cut(s)	87, 560, 801
HpySE526I	ACGT	2 cut(s)	194, 263
Hsp92I	GRCGYC	1 cut(s)	194
Hsp92II	CATG	2 cut(s)	526, 746
HspAI	GCGC	1 cut(s)	171
Ksp22I	TGATCA	1 cut(s)	771
Kzo9I	GATC	4 cut(s)	90, 535, 556, 771
LmnI	GCTCC	5 cut(s)	125, 140, 178, 223, 722
Lsp1109I	GCAGC	7 cut(s)	202, 230, 422, 430, 490, 623, 737
MaeI	CTAG	3 cut(s)	300, 492, 762
MaeII	ACGT	2 cut(s)	194, 263
MalI	GATC	4 cut(s)	92, 537, 558, 773
MbiI	CCGCTC	1 cut(s)	135
MboI	GATC	4 cut(s)	90, 535, 556, 771
MboII	GAAGA	8 cut(s)	66, 69, 72, 75, 343, 494, 680, 745
MhlI	GDGCHC	2 cut(s)	228, 377
MlsI	TGGCCA	1 cut(s)	323
MluCI	AATT	5 cut(s)	36, 113, 178, 780, 837
MluNI	TGGCCA	1 cut(s)	323
MmeI	TCCRAC	5 cut(s)	246, 271, 443, 700, 813
MnlI	CCTC	8 cut(s)	110, 160, 280, 365, 672, 748, 802, 805
Mox20I	TGGCCA	1 cut(s)	323
MscI	TGGCCA	1 cut(s)	323
MseI	TTAA	1 cut(s)	158
Msp20I	TGGCCA	1 cut(s)	323
MspA1I	CMGCKG	2 cut(s)	221, 413
MspI	CCGG	1 cut(s)	202
MspR9I	CCNGG	2 cut(s)	202, 344
MvaI	CCWGG	1 cut(s)	344
MvnI	CGCG	1 cut(s)	371
MwoI	GCNNNNNNNGC	5 cut(s)	117, 368, 473, 608, 617
NciI	CCSGG	1 cut(s)	202
NdeII	GATC	4 cut(s)	90, 535, 556, 771
NlaIII	CATG	2 cut(s)	526, 746
NlaIV	GGNNCC	2 cut(s)	33, 225
NmeAIII	GCCGAG	1 cut(s)	8
PcsI	WCGNNNNNNNCGW	1 cut(s)	822
PfeI	GAWTC	5 cut(s)	209, 310, 625, 685, 822
PflFI	GACNNNGTC	2 cut(s)	196, 661
PkrI	GCNGC	7 cut(s)	217, 220, 412, 445, 505, 613, 727
Psp6I	CCWGG	1 cut(s)	342
PspFI	CCCAGC	2 cut(s)	227, 620
PspGI	CCWGG	1 cut(s)	342
PspN4I	GGNNCC	2 cut(s)	33, 225
PspPI	GGNCC	2 cut(s)	31, 204
PstI	CTGCAG	1 cut(s)	220
PstNI	CAGNNNCTG	1 cut(s)	620
PsyI	GACNNNGTC	2 cut(s)	196, 661
PvuII	CAGCTG	1 cut(s)	413
RsaI	GTAC	2 cut(s)	496, 640
RsaNI	GTAC	2 cut(s)	495, 639
Rsr2I	CGGWCCG	1 cut(s)	204
RsrII	CGGWCCG	1 cut(s)	204
SaqAI	TTAA	1 cut(s)	158
SatI	GCNGC	7 cut(s)	216, 219, 411, 444, 504, 612, 726
Sau3AI	GATC	4 cut(s)	90, 535, 556, 771
Sau96I	GGNCC	2 cut(s)	31, 204
ScaI	AGTACT	1 cut(s)	496
ScrFI	CCNGG	2 cut(s)	202, 344
SduI	GDGCHC	2 cut(s)	228, 377
SfcI	CTRYAG	1 cut(s)	216
SinI	GGWCC	1 cut(s)	204
SmlI	CTYRAG	2 cut(s)	334, 597
SmoI	CTYRAG	2 cut(s)	334, 597
Sse9I	AATT	5 cut(s)	36, 113, 178, 780, 837
SsiI	CCGC	6 cut(s)	103, 133, 154, 183, 221, 467
SspMI	CTAG	3 cut(s)	300, 492, 762
StyD4I	CCNGG	2 cut(s)	200, 342
TaaI	ACNGT	1 cut(s)	283
TaiI	ACGT	2 cut(s)	197, 266
TaqI	TCGA	2 cut(s)	787, 825
TaqII	GACCGA	1 cut(s)	740
TasI	AATT	5 cut(s)	36, 113, 178, 780, 837
TatI	WGTACW	1 cut(s)	494
TfiI	GAWTC	5 cut(s)	209, 310, 625, 685, 822
Tru1I	TTAA	1 cut(s)	158
Tru9I	TTAA	1 cut(s)	158
TscAI	CASTG	1 cut(s)	281
TseI	GCWGC	7 cut(s)	215, 218, 410, 443, 503, 611, 725
TspDTI	ATGAA	4 cut(s)	17, 57, 249, 355
TspGWI	ACGGA	1 cut(s)	303
TspRI	CASTG	1 cut(s)	281
Tth111I	GACNNNGTC	2 cut(s)	196, 661
VneI	GTGCAC	1 cut(s)	373
VpaK11BI	GGWCC	1 cut(s)	204
XapI	RAATTY	2 cut(s)	113, 837
XspI	CTAG	3 cut(s)	300, 492, 762
ZraI	GACGTC	1 cut(s)	195
ZrmI	AGTACT	1 cut(s)	496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.