Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0007258

Physical Location & Seq

Genomic Coordinates Forward (+)

19666310 .. 19669113

Gene Structure 2804 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGAAGGGACTGCTCAAGTCCTTCACTAGGGTTGGAGTAGGTGTTAGGGGTTATAGCGCGGCGAGGAAGGACCTTCGGATTGAGGGGGTTAAGCATGCCATAGCTGTTGCTTCTGGTAAAGGCGGTGTCGGCAAGTCCACCACTGCAGTTAATCTGGCTGTTGCACTTGCTAACAAGTGCCAAATGAAGGTTGGCTTGCTTGATGCTGATATATACGGACCAAATGTTCCTATAATGATGAAGCTTGATAGAAAGCCAGAAGTTACTGAAGATAAAAAAATGATTCCAATCGAGAGCTATGGAGTCAAGTGTATGTCAATGGGACTTCTTGTGGATAAGGATGCTCCGCTTGTTTGGAGAGGTCCCATGGTATCTAGCGCTCTTGAAAAAATGACTAGGGGCGCTGACTGGGGAAATCTTGATATTCTTGTGGTAGATATGCCTCCTGGCACTGGTGATGCTCATATAACTGTATCCCAAAGGCTGCAATTATCAGGTGCATTGATTGTTTCAACGCCTCAAGATGTAGCATTAATGGATGCCCGTAGAGGAATTAACATGTTCTCTAAAGTCGAAGTTCCTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ParA

Protein Analysis

196

Amino Acids

20.82

Weight (kDa)

9.49

Isoelectric Point (pI)

29.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ParA	PF10609	30 - 195	4.6e-71	NUBPL iron-transfer P-loop NTPase
MipZ	PF09140	32 - 80	5.4e-07	ATPase MipZ
AAA_31	PF13614	33 - 72	1.1e-08	AAA domain
CbiA	PF01656	34 - 188	1.9e-12	CobQ/CobB/MinD/ParA nucleotide binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007258)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19540
fragaria_vesca	FvH4_2g22230 FvH4_2g22230 FvH4_2g22230 FvH4_2g22230
malus_domestica	MD05G1203400.v1.1 MD10G1190700.v1.1
prunus_persica	Prupe.8G229700_v2.0.a1 Prupe.8G229700_v2.0.a1 Prupe.8G229700_v2.0.a1 Prupe.8G229700_v2.0.a1
pyrus_communis	pycom05g18990 pycom10g16430
rosa_chinensis	RchiOBHm_Chr6g0289151
rosa_laevigata	RLG00000012327
rosa_multiflora	Rmu_sc0028086.1_g000001
rosa_roxburghii	Rroxscaffold_7G00179480 Rroxscaffold_7G00179530
rosa_rugosa	Rorug06G0201200
rosa_samantha	Rh6AG312400 Rh6BG319300 Rh6BG320500 Rh6CG325800 Rh6DG311700
rosa_wichuraiana	Rw6G026980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	59
AciI	CCGC	3 cut(s)	59, 123, 347
AcuI	CTGAAG	1 cut(s)	288
AfeI	AGCGCT	1 cut(s)	379
AfiI	CCNNNNNNNGG	3 cut(s)	27, 187, 452
AflIII	ACRYGT	1 cut(s)	558
AgsI	TTSAA	2 cut(s)	386, 513
AjnI	CCWGG	1 cut(s)	445
AloI	GAACNNNNNNTCC	2 cut(s)	210, 242
AluBI	AGCT	3 cut(s)	104, 244, 297
AluI	AGCT	3 cut(s)	104, 244, 297
Aor51HI	AGCGCT	1 cut(s)	379
ApeKI	GCWGC	1 cut(s)	484
AseI	ATTAAT	1 cut(s)	533
AspLEI	GCGC	3 cut(s)	59, 380, 404
AspS9I	GGNCC	3 cut(s)	70, 218, 362
AsuHPI	GGTGA	1 cut(s)	467
AvaII	GGWCC	3 cut(s)	70, 218, 362
BbvI	GCAGC	1 cut(s)	471
BciT130I	CCWGG	1 cut(s)	447
BciVI	GTATCC	1 cut(s)	484
BfaI	CTAG	3 cut(s)	27, 375, 396
BfmI	CTRYAG	1 cut(s)	144
BfoI	RGCGCY	2 cut(s)	381, 405
BfuI	GTATCC	1 cut(s)	484
BisI	GCNGC	2 cut(s)	60, 485
BlsI	GCNGC	2 cut(s)	61, 486
Bme1390I	CCNGG	1 cut(s)	447
Bme18I	GGWCC	3 cut(s)	70, 218, 362
BmgT120I	GGNCC	3 cut(s)	70, 218, 362
BmiI	GGNNCC	1 cut(s)	364
BmrFI	CCNGG	1 cut(s)	447
BmrI	ACTGGG	1 cut(s)	418
BmsI	GCATC	4 cut(s)	193, 331, 448, 529
BmuI	ACTGGG	1 cut(s)	418
BpuEI	CTTGAG	1 cut(s)	504
BsaBI	GATNNNNATC	1 cut(s)	287
BsaJI	CCNNGG	1 cut(s)	366
BsaXI	ACNNNNNCTCC	2 cut(s)	27, 57
Bsc4I	CCNNNNNNNGG	3 cut(s)	27, 187, 452
Bse1I	ACTGG	2 cut(s)	413, 457
Bse8I	GATNNNNATC	1 cut(s)	287
BseBI	CCWGG	1 cut(s)	447
BseDI	CCNNGG	1 cut(s)	366
BseGI	GGATG	2 cut(s)	346, 544
BseJI	GATNNNNATC	1 cut(s)	287
BseLI	CCNNNNNNNGG	3 cut(s)	27, 187, 452
BseNI	ACTGG	2 cut(s)	413, 457
BseXI	GCAGC	1 cut(s)	471
Bsh1236I	CGCG	1 cut(s)	59
BslFI	GGGAC	3 cut(s)	21, 336, 348
BslI	CCNNNNNNNGG	3 cut(s)	27, 187, 452
BsmFI	GGGAC	3 cut(s)	21, 336, 348
Bsp19I	CCATGG	1 cut(s)	366
BspACI	CCGC	3 cut(s)	59, 123, 347
BspFNI	CGCG	1 cut(s)	59
BspLI	GGNNCC	1 cut(s)	364
BspMAI	CTGCAG	1 cut(s)	148
BsrI	ACTGG	2 cut(s)	413, 457
BssECI	CCNNGG	1 cut(s)	366
BssT1I	CCWWGG	1 cut(s)	366
Bst2UI	CCWGG	1 cut(s)	447
Bst4CI	ACNGT	1 cut(s)	472
BstC8I	GCNNGC	2 cut(s)	96, 197
BstDSI	CCRYGG	1 cut(s)	366
BstENI	CCTNNNNNAGG	1 cut(s)	25
BstF5I	GGATG	2 cut(s)	346, 544
BstFNI	CGCG	1 cut(s)	59
BstH2I	RGCGCY	2 cut(s)	381, 405
BstHHI	GCGC	3 cut(s)	59, 380, 404
BstMWI	GCNNNNNNNGC	1 cut(s)	129
BstNI	CCWGG	1 cut(s)	447
BstNSI	RCATGY	2 cut(s)	98, 562
BstSCI	CCNGG	1 cut(s)	445
BstSFI	CTRYAG	1 cut(s)	144
BstUI	CGCG	1 cut(s)	59
BstV1I	GCAGC	1 cut(s)	471
BsuI	GTATCC	1 cut(s)	484
BtgI	CCRYGG	1 cut(s)	366
BtsCI	GGATG	2 cut(s)	346, 544
BtsI	GCAGTG	1 cut(s)	141
BtsIMutI	CAGTG	2 cut(s)	141, 450
Cac8I	GCNNGC	2 cut(s)	96, 197
CfoI	GCGC	3 cut(s)	59, 380, 404
Cfr13I	GGNCC	3 cut(s)	70, 218, 362
CviAII	CATG	3 cut(s)	95, 367, 559
CviJI	RGCY	7 cut(s)	104, 158, 195, 244, 256, 297, 484
CviKI_1	RGCY	7 cut(s)	104, 158, 195, 244, 256, 297, 484
Eco130I	CCWWGG	1 cut(s)	366
Eco47I	GGWCC	3 cut(s)	70, 218, 362
Eco47III	AGCGCT	1 cut(s)	379
Eco57I	CTGAAG	1 cut(s)	288
EcoNI	CCTNNNNNAGG	1 cut(s)	25
EcoO109I	RGGNCCY	2 cut(s)	70, 362
EcoRII	CCWGG	1 cut(s)	445
EcoT14I	CCWWGG	1 cut(s)	366
ErhI	CCWWGG	1 cut(s)	366
FaeI	CATG	3 cut(s)	98, 370, 562
FalI	AAGNNNNNCTT	2 cut(s)	179, 211
FaqI	GGGAC	3 cut(s)	21, 336, 348
FatI	CATG	3 cut(s)	94, 366, 558
Fnu4HI	GCNGC	2 cut(s)	60, 485
FokI	GGATG	2 cut(s)	353, 551
Fsp4HI	GCNGC	2 cut(s)	60, 485
FspBI	CTAG	3 cut(s)	27, 375, 396
GlaI	GCGC	3 cut(s)	58, 379, 403
GluI	GCNGC	2 cut(s)	60, 485
HaeII	RGCGCY	2 cut(s)	381, 405
HhaI	GCGC	3 cut(s)	59, 380, 404
Hin1II	CATG	3 cut(s)	98, 370, 562
Hin6I	GCGC	3 cut(s)	57, 378, 402
HinP1I	GCGC	3 cut(s)	57, 378, 402
HindIII	AAGCTT	1 cut(s)	242
HinfI	GANTC	2 cut(s)	283, 303
HphI	GGTGA	1 cut(s)	467
Hpy166II	GTNNAC	1 cut(s)	138
Hpy188I	TCNGA	1 cut(s)	78
Hpy188III	TCNNGA	4 cut(s)	292, 383, 419, 521
Hpy8I	GTNNAC	1 cut(s)	138
HpyAV	CCTTC	4 cut(s)	31, 61, 83, 181
HpyCH4III	ACNGT	1 cut(s)	472
HpyCH4V	TGCA	4 cut(s)	146, 164, 487, 500
HpyF10VI	GCNNNNNNNGC	1 cut(s)	129
Hsp92II	CATG	3 cut(s)	98, 370, 562
HspAI	GCGC	3 cut(s)	57, 378, 402
LmnI	GCTCC	1 cut(s)	349
LpnPI	CCDG	8 cut(s)	99, 140, 270, 394, 432, 438, 459, 480
Lsp1109I	GCAGC	1 cut(s)	471
LweI	GCATC	4 cut(s)	193, 331, 448, 529
MaeI	CTAG	3 cut(s)	27, 375, 396
MaeIII	GTNAC	1 cut(s)	262
MboII	GAAGA	1 cut(s)	281
MluCI	AATT	2 cut(s)	488, 552
MlyI	GAGTC	1 cut(s)	312
MmeI	TCCRAC	1 cut(s)	13
MnlI	CCTC	6 cut(s)	57, 76, 353, 453, 528, 542
MseI	TTAA	4 cut(s)	90, 150, 533, 555
MspR9I	CCNGG	1 cut(s)	447
MvaI	CCWGG	1 cut(s)	447
MvnI	CGCG	1 cut(s)	59
MwoI	GCNNNNNNNGC	1 cut(s)	129
NcoI	CCATGG	1 cut(s)	366
NlaIII	CATG	3 cut(s)	98, 370, 562
NlaIV	GGNNCC	1 cut(s)	364
NspI	RCATGY	2 cut(s)	98, 562
PaeI	GCATGC	1 cut(s)	98
PciI	ACATGT	1 cut(s)	558
PfeI	GAWTC	1 cut(s)	283
PkrI	GCNGC	2 cut(s)	61, 486
PleI	GAGTC	1 cut(s)	311
PpsI	GAGTC	1 cut(s)	311
PpuMI	RGGWCCY	2 cut(s)	70, 362
PscI	ACATGT	1 cut(s)	558
PshBI	ATTAAT	1 cut(s)	533
Psp5II	RGGWCCY	2 cut(s)	70, 362
Psp6I	CCWGG	1 cut(s)	445
PspGI	CCWGG	1 cut(s)	445
PspN4I	GGNNCC	1 cut(s)	364
PspPI	GGNCC	3 cut(s)	70, 218, 362
PspPPI	RGGWCCY	2 cut(s)	70, 362
PstI	CTGCAG	1 cut(s)	148
SaqAI	TTAA	4 cut(s)	90, 150, 533, 555
SatI	GCNGC	2 cut(s)	60, 485
Sau96I	GGNCC	3 cut(s)	70, 218, 362
SchI	GAGTC	1 cut(s)	312
ScrFI	CCNGG	1 cut(s)	447
SetI	ASST	8 cut(s)	43, 75, 106, 192, 246, 299, 364, 499
SfaNI	GCATC	4 cut(s)	193, 331, 448, 529
SfcI	CTRYAG	1 cut(s)	144
SinI	GGWCC	3 cut(s)	70, 218, 362
SmlI	CTYRAG	2 cut(s)	14, 519
SmoI	CTYRAG	2 cut(s)	14, 519
SphI	GCATGC	1 cut(s)	98
Sse9I	AATT	2 cut(s)	488, 552
SsiI	CCGC	3 cut(s)	59, 123, 347
SspMI	CTAG	3 cut(s)	27, 375, 396
StyD4I	CCNGG	1 cut(s)	445
StyI	CCWWGG	1 cut(s)	366
TaaI	ACNGT	1 cut(s)	472
TaqI	TCGA	2 cut(s)	291, 573
TasI	AATT	2 cut(s)	488, 552
TauI	GCSGC	1 cut(s)	62
TfiI	GAWTC	1 cut(s)	283
Tru1I	TTAA	4 cut(s)	90, 150, 533, 555
Tru9I	TTAA	4 cut(s)	90, 150, 533, 555
TscAI	CASTG	2 cut(s)	148, 457
TseI	GCWGC	1 cut(s)	484
TspDTI	ATGAA	3 cut(s)	17, 200, 254
TspGWI	ACGGA	1 cut(s)	231
TspRI	CASTG	2 cut(s)	148, 457
VpaK11BI	GGWCC	3 cut(s)	70, 218, 362
VspI	ATTAAT	1 cut(s)	533
XagI	CCTNNNNNAGG	1 cut(s)	25
XceI	RCATGY	2 cut(s)	98, 562
XcmI	CCANNNNNNNNNTGG	1 cut(s)	188
XspI	CTAG	3 cut(s)	27, 375, 396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.