Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0002759

Physical Location & Seq

Genomic Coordinates Reverse (-)

23064002 .. 23066427

Gene Structure 2426 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGCATTTGCGAATGTTGGAGCTGGCAAGAGATGCACTAAATTCAGAAGGCTTTTGTGTAATTGGAGCTTATATTTCGCCTGTTAATGATGCATACAACAAGAAGGGACTTATATCTGCTGAACATCGTGTACAAATGTGTCATCTAGCTTGCAAGAGTTCAGAATTTATAATGGTTGATCCGTGGGAGGCAAGACAAAGTAGCTTCCAGCGCACCTTAACTGTTCTATCTAGAGTCAAGGGTTTCTTGTCTGAGGCTGGTATGATACCAACTGAATCCCTCAAGTGCATGCTTGTCTGTGGTTCTGATCTACTCCAGTCTTTTGGCATTCCTGGATTTTGGATTCCTGAGCAGATGAGAAGCATATGTGGAGATTATGGTGTGGTTTCCATTCGCAGGGATGGACAAGATGTTGACAAAGTTATCTCAAATGATGAAATTTTGAAAGAGAACAAAGGTAACATAAAAGTTGTGGATGAACTTGTACCGAACCAAATAAGTTCAACGAGAGTAAGGGATTGCATTTCAAGAGGATTGTCAATAAAATATCTGACTGCAGATGAAGTAATTGATTACGTTAGAGATCGATCGTCTGTACTTGAACACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000309 GO:0003674 GO:0003824 GO:0004515 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006163 GO:0006520 GO:0006531 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009066 GO:0009108 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009165 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009435 GO:0009611 GO:0009987 GO:0016604 GO:0016740 GO:0016772 GO:0016779 GO:0017144 GO:0018130 GO:0019355 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0019674 GO:0019693 GO:0019752 GO:0031974 GO:0031981 GO:0034627 GO:0034628 GO:0034641 GO:0034654 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046034 GO:0046483 GO:0046496 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0070013 GO:0070566 GO:0071704 GO:0072521 GO:0072524 GO:0072525 GO:0090407 GO:1901135 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1990966

KEGG Pathways

Metabolic & Signaling

ko00760 ko01100 map00760 map01100

Pfam Domains

Protein Families

CTP_transf_like Myb_DNA-bind_4

Protein Analysis

204

Amino Acids

22.79

Weight (kDa)

6.1

Isoelectric Point (pI)

46.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CTP_transf_like	PF01467	2 - 172	1.1e-12	Cytidylyltransferase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0002759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55810 AT5G55810 AT5G55810
fragaria_vesca	FvH4_3g11630
malus_domestica	MD05G1261800.v1.1 MD10G1240100.v1.1
prunus_persica	Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.3G149500_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1 Prupe.4G103800_v2.0.a1
pyrus_communis	pycom05g24550 pycom10g20070
rosa_chinensis	RchiOBHm_Chr5g0018651 RchiOBHm_Chr7g0241681
rosa_laevigata	RLG00000000554 RLG00000032386
rosa_multiflora	Rmu_sc0001848.1_g000004 Rmu_sc0002268.1_g000007
rosa_roxburghii	Rroxscaffold_1G00059100 Rroxscaffold_3G00218820
rosa_rugosa	Rorug05G0045700 Rorug05G0045700 Rorug05G0045800 Rorug05G0045900 Rorug07G0346300
rosa_samantha	Rh5AG136900 Rh5DG136900 Rh7AG500700 Rh7BG471900 Rh7CG517200 Rh7DG485700
rosa_wichuraiana	Rw5G012130 Rw7G042310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	170
AclWI	GGATC	1 cut(s)	173
AcsI	RAATTY	3 cut(s)	40, 164, 438
AfaI	GTAC	3 cut(s)	132, 486, 597
AfiI	CCNNNNNNNGG	1 cut(s)	396
AgsI	TTSAA	4 cut(s)	445, 504, 528, 602
AjnI	CCWGG	1 cut(s)	331
AluBI	AGCT	4 cut(s)	22, 68, 149, 204
AluI	AGCT	4 cut(s)	22, 68, 149, 204
AlwI	GGATC	1 cut(s)	173
ApoI	RAATTY	3 cut(s)	40, 164, 438
AspLEI	GCGC	1 cut(s)	213
BccI	CCATC	1 cut(s)	395
BciT130I	CCWGG	1 cut(s)	333
BfaI	CTAG	2 cut(s)	146, 231
BfmI	CTRYAG	1 cut(s)	555
Bme1390I	CCNGG	1 cut(s)	333
BmrFI	CCNGG	1 cut(s)	333
BmsI	GCATC	2 cut(s)	22, 79
BpmI	CTGGAG	1 cut(s)	299
Bpu10I	CCTNAGC	1 cut(s)	348
BpuEI	CTTGAG	1 cut(s)	266
Bsa29I	ATCGAT	1 cut(s)	586
BsaJI	CCNNGG	1 cut(s)	182
Bsc4I	CCNNNNNNNGG	1 cut(s)	396
Bse1I	ACTGG	1 cut(s)	316
BseBI	CCWGG	1 cut(s)	333
BseCI	ATCGAT	1 cut(s)	586
BseDI	CCNNGG	1 cut(s)	182
BseGI	GGATG	2 cut(s)	406, 481
BseLI	CCNNNNNNNGG	1 cut(s)	396
BseMII	CTCAG	2 cut(s)	243, 339
BseNI	ACTGG	1 cut(s)	316
Bsh1285I	CGRYCG	1 cut(s)	590
BshVI	ATCGAT	1 cut(s)	586
BsiEI	CGRYCG	1 cut(s)	590
BslFI	GGGAC	1 cut(s)	120
BslI	CCNNNNNNNGG	1 cut(s)	396
BsmFI	GGGAC	1 cut(s)	120
BsmI	GAATGC	1 cut(s)	327
Bsp1407I	TGTACA	1 cut(s)	130
Bsp143I	GATC	4 cut(s)	178, 307, 583, 587
BspCNI	CTCAG	2 cut(s)	244, 340
BspDI	ATCGAT	1 cut(s)	586
BspMAI	CTGCAG	1 cut(s)	559
BspPI	GGATC	1 cut(s)	173
BsrGI	TGTACA	1 cut(s)	130
BsrI	ACTGG	1 cut(s)	316
BssECI	CCNNGG	1 cut(s)	182
BssMI	GATC	4 cut(s)	178, 307, 583, 587
Bst2UI	CCWGG	1 cut(s)	333
Bst4CI	ACNGT	1 cut(s)	223
BstAPI	GCANNNNNTGC	1 cut(s)	32
BstAUI	TGTACA	1 cut(s)	130
BstC8I	GCNNGC	3 cut(s)	24, 151, 290
BstDEI	CTNAG	2 cut(s)	252, 348
BstDSI	CCRYGG	1 cut(s)	182
BstF5I	GGATG	2 cut(s)	406, 481
BstHHI	GCGC	1 cut(s)	213
BstKTI	GATC	4 cut(s)	181, 310, 586, 590
BstMBI	GATC	4 cut(s)	178, 307, 583, 587
BstMCI	CGRYCG	1 cut(s)	590
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 210
BstNI	CCWGG	1 cut(s)	333
BstNSI	RCATGY	1 cut(s)	292
BstSCI	CCNGG	1 cut(s)	331
BstSFI	CTRYAG	1 cut(s)	555
BstXI	CCANNNNNNTGG	1 cut(s)	323
Bsu15I	ATCGAT	1 cut(s)	586
BsuTUI	ATCGAT	1 cut(s)	586
BtgI	CCRYGG	1 cut(s)	182
BtsCI	GGATG	2 cut(s)	406, 481
Cac8I	GCNNGC	3 cut(s)	24, 151, 290
CfoI	GCGC	1 cut(s)	213
ClaI	ATCGAT	1 cut(s)	586
Csp6I	GTAC	3 cut(s)	131, 485, 596
CviAII	CATG	1 cut(s)	289
CviJI	RGCY	6 cut(s)	22, 51, 68, 149, 204, 257
CviKI_1	RGCY	6 cut(s)	22, 51, 68, 149, 204, 257
CviQI	GTAC	3 cut(s)	131, 485, 596
DdeI	CTNAG	2 cut(s)	252, 348
DpnI	GATC	4 cut(s)	180, 309, 585, 589
DpnII	GATC	4 cut(s)	178, 307, 583, 587
EcoRII	CCWGG	1 cut(s)	331
EcoT22I	ATGCAT	2 cut(s)	6, 94
FaeI	CATG	1 cut(s)	292
FalI	AAGNNNNNCTT	2 cut(s)	230, 262
FaqI	GGGAC	1 cut(s)	120
FatI	CATG	1 cut(s)	288
FauNDI	CATATG	1 cut(s)	365
FokI	GGATG	2 cut(s)	413, 488
FspBI	CTAG	2 cut(s)	146, 231
GlaI	GCGC	1 cut(s)	212
GsuI	CTGGAG	1 cut(s)	299
HhaI	GCGC	1 cut(s)	213
Hin1II	CATG	1 cut(s)	292
Hin6I	GCGC	1 cut(s)	211
HinP1I	GCGC	1 cut(s)	211
HincII	GTYRAC	1 cut(s)	415
HindII	GTYRAC	1 cut(s)	415
HinfI	GANTC	3 cut(s)	234, 275, 343
Hpy166II	GTNNAC	2 cut(s)	131, 415
Hpy188I	TCNGA	5 cut(s)	46, 163, 253, 307, 552
Hpy188III	TCNNGA	3 cut(s)	231, 347, 528
Hpy8I	GTNNAC	2 cut(s)	131, 415
HpyAV	CCTTC	2 cut(s)	41, 97
HpyCH4III	ACNGT	1 cut(s)	223
HpyCH4IV	ACGT	1 cut(s)	576
HpyCH4V	TGCA	7 cut(s)	4, 35, 92, 153, 288, 522, 557
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 210
HpyF3I	CTNAG	2 cut(s)	252, 348
HpySE526I	ACGT	1 cut(s)	576
Hsp92II	CATG	1 cut(s)	292
HspAI	GCGC	1 cut(s)	211
Kzo9I	GATC	4 cut(s)	178, 307, 583, 587
LmnI	GCTCC	2 cut(s)	19, 65
LpnPI	CCDG	9 cut(s)	8, 93, 221, 243, 318, 329, 345, 360, 382
LweI	GCATC	2 cut(s)	22, 79
MaeI	CTAG	2 cut(s)	146, 231
MaeII	ACGT	1 cut(s)	576
MaeIII	GTNAC	1 cut(s)	458
MalI	GATC	4 cut(s)	180, 309, 585, 589
MboI	GATC	4 cut(s)	178, 307, 583, 587
MluCI	AATT	5 cut(s)	40, 60, 164, 438, 567
MlyI	GAGTC	1 cut(s)	243
MnlI	CCTC	4 cut(s)	181, 247, 290, 524
Mph1103I	ATGCAT	2 cut(s)	6, 94
MseI	TTAA	2 cut(s)	84, 218
MspR9I	CCNGG	1 cut(s)	333
Mva1269I	GAATGC	1 cut(s)	327
MvaI	CCWGG	1 cut(s)	333
MwoI	GCNNNNNNNGC	2 cut(s)	32, 210
NdeI	CATATG	1 cut(s)	365
NdeII	GATC	4 cut(s)	178, 307, 583, 587
NlaIII	CATG	1 cut(s)	292
NsiI	ATGCAT	2 cut(s)	6, 94
NspI	RCATGY	1 cut(s)	292
PaeI	GCATGC	1 cut(s)	292
PctI	GAATGC	1 cut(s)	327
PfeI	GAWTC	2 cut(s)	275, 343
PfoI	TCCNGGA	1 cut(s)	331
Ple19I	CGATCG	1 cut(s)	590
PleI	GAGTC	1 cut(s)	242
PpsI	GAGTC	1 cut(s)	242
PsiI	TTATAA	1 cut(s)	170
Psp6I	CCWGG	1 cut(s)	331
PspGI	CCWGG	1 cut(s)	331
PsrI	GAACNNNNNNTAC	2 cut(s)	114, 146
PstI	CTGCAG	1 cut(s)	559
PvuI	CGATCG	1 cut(s)	590
RsaI	GTAC	3 cut(s)	132, 486, 597
RsaNI	GTAC	3 cut(s)	131, 485, 596
SaqAI	TTAA	2 cut(s)	84, 218
Sau3AI	GATC	4 cut(s)	178, 307, 583, 587
SchI	GAGTC	1 cut(s)	243
ScrFI	CCNGG	1 cut(s)	333
SetI	ASST	7 cut(s)	24, 70, 151, 206, 218, 460, 579
SfaNI	GCATC	2 cut(s)	22, 79
SfcI	CTRYAG	1 cut(s)	555
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
SphI	GCATGC	1 cut(s)	292
Sse9I	AATT	5 cut(s)	40, 60, 164, 438, 567
SspMI	CTAG	2 cut(s)	146, 231
StyD4I	CCNGG	1 cut(s)	331
TaaI	ACNGT	1 cut(s)	223
TaiI	ACGT	1 cut(s)	579
TaqI	TCGA	1 cut(s)	586
TasI	AATT	5 cut(s)	40, 60, 164, 438, 567
TatI	WGTACW	2 cut(s)	130, 595
TfiI	GAWTC	2 cut(s)	275, 343
Tru1I	TTAA	2 cut(s)	84, 218
Tru9I	TTAA	2 cut(s)	84, 218
TspDTI	ATGAA	3 cut(s)	450, 492, 576
TspGWI	ACGGA	1 cut(s)	171
XapI	RAATTY	3 cut(s)	40, 164, 438
XbaI	TCTAGA	1 cut(s)	230
XceI	RCATGY	1 cut(s)	292
XspI	CTAG	2 cut(s)	146, 231
Zsp2I	ATGCAT	2 cut(s)	6, 94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.