Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0003713

Physical Location & Seq

Genomic Coordinates Forward (+)

24593675 .. 24594719

Gene Structure 1045 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGTGATGGCCTTGATATCATGCCACTATAAGTACGTACCAAATCGGCCACCATCAATCACTACTCTCATACTTGAACTGTCAATCAAACCTCAATCCTTTCTTTCAACCATGGCTGCTTCCACAATGGCTCTGTCTTCCCCAACCTTCGCCGGCAAAGCCGTGCAACTTTCCCCGGGAGCCACCGAGCTTTTCGGAAATGGAAGAGTCTCCATGAGGAAAACTGCTACCAAACAAGTCTCCTCTGGCAGCCCATGGTACGGCCCTGATAGAGTCAAGTACTTGGGGCCATTCTCCGGCGAGCCCCCAAGCTACCTTACCGGCGAGTTCCCCGGTGACTACGGCTGGGACACCGCCGGACTCTCAGCTGACCCAGAGACCTTCGCCAAGAACCGTGAGCTCGAAGTGATCGACTCTAGATGGGCCATGCTTGGAGCTCTTGGATGCGTTTTCCCAGAGCTCTTGTCCCGCAACGGTGTCAAGTTCGGCGAAGCCGTGTGGTTCAAGGCCGGAGCCCAGATCTTCAGCGAGGGCGGTCTCGACTACTTGGGAAACCCTAGCTTGGTCCATGCACAGAGCATCTTGGCCATCTGGGCTACCCAAGTGGTGTTGATGGGCGCAGTTGAGGGATACAGAATTGCCGGCGGACCCCTCGGAGAGGTGACCGACCCTCTTTACCCCGGAGGAAGCTTCGACCCGTTGGGCCTTGCCGATGACCCAGAAGCCTTTGCTGAGCTCAAGGTGAAGGAGCTCAAGAATGGAAGGTTGGCCATGTTCTCCATGTTTGGATTCTTTGTCCAGGCCATCGTCACCGGAAAGGGACCATTGGAGAACCTTGCCGACCACCTTGCCGACCCGGTCGCCAACAATGCTTGGAACTATGCCACAAACTTTGTTCCTGGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009765 GO:0009768 GO:0009941 GO:0009987 GO:0010287 GO:0015979 GO:0016020 GO:0016168 GO:0019684 GO:0031409 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046906 GO:0048037 GO:0050896 GO:0055035 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00196 ko01100 map00196 map01100

Pfam Domains

Protein Families

Chloroa_b-bind

Protein Analysis

303

Amino Acids

32.33

Weight (kDa)

5.32

Isoelectric Point (pI)

30.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chloroa_b-bind	PF00504	102 - 269	6.1e-49	Chlorophyll A-B binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003713)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29910 AT1G29920 AT1G29930 AT2G34420 AT2G34430
fragaria_vesca	FvH4_3g06120
malus_domestica	MD05G1289200.v1.1 MD05G1289300.v1.1 MD10G1265300.v1.1 MD10G1265400.v1.1
prunus_persica	Prupe.4G076200_v2.0.a1 Prupe.4G076300_v2.0.a1
pyrus_communis	pycom05g26650 pycom05g26660 pycom10g22120 pycom10g22130
rosa_chinensis	RchiOBHm_Chr5g0013251 RchiOBHm_Chr5g0013261
rosa_laevigata	RLG00000032001 RLG00000032002
rosa_multiflora	Rmu_sc0004521.1_g000018 Rmu_sc0004521.1_g000019
rosa_roxburghii	Rroxscaffold_1G00063250 Rroxscaffold_1G00063260
rosa_rugosa	Rorug05G0008500 Rorug05G0008600
rosa_samantha	Rh5AG103100 Rh5AG103200 Rh5BG099900 Rh5BG100000 Rh5DG098700 Rh5DG098800
rosa_wichuraiana	Rw5G009000 Rw5G009010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	354, 469, 534, 645
AcoI	YGGCCR	3 cut(s)	47, 585, 768
AcuI	CTGAAG	1 cut(s)	508
AfaI	GTAC	4 cut(s)	35, 39, 260, 281
AfiI	CCNNNNNNNGG	4 cut(s)	260, 296, 562, 658
AgsI	TTSAA	3 cut(s)	77, 108, 505
AjnI	CCWGG	2 cut(s)	798, 898
AjuI	GAANNNNNNNTTGG	2 cut(s)	749, 781
Alw21I	GWGCWC	5 cut(s)	402, 439, 462, 738, 753
Alw26I	GTCTC	4 cut(s)	214, 244, 371, 542
Ama87I	CYCGRG	1 cut(s)	175
ApeKI	GCWGC	2 cut(s)	116, 249
AspLEI	GCGC	1 cut(s)	620
AspS9I	GGNCC	7 cut(s)	263, 287, 423, 565, 647, 703, 821
AsuC2I	CCSGG	5 cut(s)	176, 177, 333, 681, 857
AsuHPI	GGTGA	5 cut(s)	16, 347, 673, 754, 802
AvaI	CYCGRG	1 cut(s)	175
AvaII	GGWCC	3 cut(s)	565, 647, 821
BalI	TGGCCA	2 cut(s)	587, 770
BanII	GRGCYC	7 cut(s)	306, 402, 439, 462, 517, 738, 753
BbsI	GAAGAC	1 cut(s)	129
Bbv12I	GWGCWC	5 cut(s)	402, 439, 462, 738, 753
BbvI	GCAGC	2 cut(s)	103, 261
BccI	CCATC	5 cut(s)	61, 414, 596, 607, 812
BceAI	ACGGC	4 cut(s)	146, 277, 358, 479
BcgI	CGANNNNNNTGC	2 cut(s)	830, 864
BciT130I	CCWGG	2 cut(s)	800, 900
BciVI	GTATCC	1 cut(s)	623
BcnI	CCSGG	5 cut(s)	176, 177, 333, 681, 857
BcoDI	GTCTC	4 cut(s)	214, 244, 371, 542
BfaI	CTAG	2 cut(s)	417, 558
BfuI	GTATCC	1 cut(s)	623
BglI	GCCNNNNNGGC	1 cut(s)	593
BglII	AGATCT	1 cut(s)	519
BisI	GCNGC	2 cut(s)	117, 250
BlpI	GCTNAGC	1 cut(s)	732
BlsI	GCNGC	2 cut(s)	118, 251
BmcAI	AGTACT	1 cut(s)	281
Bme1390I	CCNGG	7 cut(s)	176, 177, 333, 681, 800, 857, 900
Bme18I	GGWCC	3 cut(s)	565, 647, 821
BmeT110I	CYCGRG	1 cut(s)	175
BmgT120I	GGNCC	7 cut(s)	263, 287, 423, 565, 647, 703, 821
BmiI	GGNNCC	5 cut(s)	181, 288, 514, 649, 822
BmrFI	CCNGG	7 cut(s)	176, 177, 333, 681, 800, 857, 900
BmsI	GCATC	2 cut(s)	434, 588
BpiI	GAAGAC	1 cut(s)	129
Bpu1102I	GCTNAGC	1 cut(s)	732
BpuEI	CTTGAG	2 cut(s)	722, 737
BpuMI	CCSGG	5 cut(s)	176, 177, 333, 681, 857
BsaAI	YACGTR	1 cut(s)	37
BsaI	GGTCTC	2 cut(s)	371, 542
BsaJI	CCNNGG	7 cut(s)	111, 174, 175, 254, 331, 652, 679
BsaWI	WCCGGW	1 cut(s)	812
Bsc4I	CCNNNNNNNGG	4 cut(s)	260, 296, 562, 658
Bse118I	RCCGGY	3 cut(s)	152, 320, 641
BseBI	CCWGG	2 cut(s)	800, 900
BseDI	CCNNGG	7 cut(s)	111, 174, 175, 254, 331, 652, 679
BseGI	GGATG	1 cut(s)	449
BseLI	CCNNNNNNNGG	4 cut(s)	260, 296, 562, 658
BseMII	CTCAG	2 cut(s)	378, 723
BseRI	GAGGAG	1 cut(s)	232
BseXI	GCAGC	2 cut(s)	103, 261
BseYI	CCCAGC	1 cut(s)	345
Bsh1285I	CGRYCG	1 cut(s)	861
BsiEI	CGRYCG	1 cut(s)	861
BsiHKAI	GWGCWC	5 cut(s)	402, 439, 462, 738, 753
BsiHKCI	CYCGRG	1 cut(s)	175
BslFI	GGGAC	3 cut(s)	362, 451, 834
BslI	CCNNNNNNNGG	4 cut(s)	260, 296, 562, 658
BsmAI	GTCTC	4 cut(s)	214, 244, 371, 542
BsmFI	GGGAC	3 cut(s)	362, 451, 834
Bso31I	GGTCTC	2 cut(s)	371, 542
BsoBI	CYCGRG	1 cut(s)	175
Bsp1286I	GDGCHC	7 cut(s)	306, 402, 439, 462, 517, 738, 753
Bsp143I	GATC	2 cut(s)	408, 519
Bsp1720I	GCTNAGC	1 cut(s)	732
Bsp19I	CCATGG	2 cut(s)	111, 254
BspACI	CCGC	4 cut(s)	354, 469, 534, 645
BspCNI	CTCAG	2 cut(s)	377, 724
BspLI	GGNNCC	5 cut(s)	181, 288, 514, 649, 822
BspTNI	GGTCTC	2 cut(s)	371, 542
BsrFI	RCCGGY	3 cut(s)	152, 320, 641
BssAI	RCCGGY	3 cut(s)	152, 320, 641
BssECI	CCNNGG	7 cut(s)	111, 174, 175, 254, 331, 652, 679
BssMI	GATC	2 cut(s)	408, 519
BssT1I	CCWWGG	2 cut(s)	111, 254
Bst2UI	CCWGG	2 cut(s)	800, 900
Bst4CI	ACNGT	3 cut(s)	81, 395, 476
Bst6I	CTCTTC	1 cut(s)	199
BstBAI	YACGTR	1 cut(s)	37
BstC8I	GCNNGC	3 cut(s)	154, 302, 643
BstDEI	CTNAG	2 cut(s)	364, 732
BstDSI	CCRYGG	2 cut(s)	111, 254
BstEII	GGTNACC	1 cut(s)	661
BstENI	CCTNNNNNAGG	1 cut(s)	656
BstF5I	GGATG	1 cut(s)	449
BstHHI	GCGC	1 cut(s)	620
BstKTI	GATC	2 cut(s)	411, 522
BstMAI	GTCTC	4 cut(s)	214, 244, 371, 542
BstMBI	GATC	2 cut(s)	408, 519
BstMCI	CGRYCG	1 cut(s)	861
BstMWI	GCNNNNNNNGC	3 cut(s)	158, 593, 869
BstNI	CCWGG	2 cut(s)	800, 900
BstPI	GGTNACC	1 cut(s)	661
BstSCI	CCNGG	7 cut(s)	174, 175, 331, 679, 798, 855, 898
BstSNI	TACGTA	1 cut(s)	37
BstV1I	GCAGC	2 cut(s)	103, 261
BstV2I	GAAGAC	1 cut(s)	129
BstX2I	RGATCY	1 cut(s)	519
BstYI	RGATCY	1 cut(s)	519
BsuI	GTATCC	1 cut(s)	623
BtgI	CCRYGG	2 cut(s)	111, 254
BtsCI	GGATG	1 cut(s)	449
Cac8I	GCNNGC	3 cut(s)	154, 302, 643
CfoI	GCGC	1 cut(s)	620
Cfr10I	RCCGGY	3 cut(s)	152, 320, 641
Cfr13I	GGNCC	7 cut(s)	263, 287, 423, 565, 647, 703, 821
Cfr9I	CCCGGG	1 cut(s)	175
Csp6I	GTAC	4 cut(s)	34, 38, 259, 280
CspCI	CAANNNNNGTGG	2 cut(s)	874, 909
CviAII	CATG	8 cut(s)	21, 112, 214, 255, 427, 569, 772, 781
CviQI	GTAC	4 cut(s)	34, 38, 259, 280
DdeI	CTNAG	2 cut(s)	364, 732
DpnI	GATC	2 cut(s)	410, 521
DpnII	GATC	2 cut(s)	408, 519
EaeI	YGGCCR	3 cut(s)	47, 585, 768
Eam1104I	CTCTTC	1 cut(s)	199
EarI	CTCTTC	1 cut(s)	199
EciI	GGCGGA	1 cut(s)	660
Ecl136II	GAGCTC	5 cut(s)	400, 437, 460, 736, 751
Eco105I	TACGTA	1 cut(s)	37
Eco130I	CCWWGG	2 cut(s)	111, 254
Eco24I	GRGCYC	7 cut(s)	306, 402, 439, 462, 517, 738, 753
Eco31I	GGTCTC	2 cut(s)	371, 542
Eco32I	GATATC	1 cut(s)	18
Eco47I	GGWCC	3 cut(s)	565, 647, 821
Eco53kI	GAGCTC	5 cut(s)	400, 437, 460, 736, 751
Eco57I	CTGAAG	1 cut(s)	508
Eco88I	CYCGRG	1 cut(s)	175
Eco91I	GGTNACC	1 cut(s)	661
EcoICRI	GAGCTC	5 cut(s)	400, 437, 460, 736, 751
EcoNI	CCTNNNNNAGG	1 cut(s)	656
EcoO65I	GGTNACC	1 cut(s)	661
EcoRII	CCWGG	2 cut(s)	798, 898
EcoRV	GATATC	1 cut(s)	18
EcoT14I	CCWWGG	2 cut(s)	111, 254
EcoT38I	GRGCYC	7 cut(s)	306, 402, 439, 462, 517, 738, 753
ErhI	CCWWGG	2 cut(s)	111, 254
FaeI	CATG	8 cut(s)	24, 115, 217, 258, 430, 572, 775, 784
FaqI	GGGAC	3 cut(s)	362, 451, 834
FatI	CATG	8 cut(s)	20, 111, 213, 254, 426, 568, 771, 780
FauI	CCCGC	1 cut(s)	476
Fnu4HI	GCNGC	2 cut(s)	117, 250
FokI	GGATG	1 cut(s)	456
FriOI	GRGCYC	7 cut(s)	306, 402, 439, 462, 517, 738, 753
Fsp4HI	GCNGC	2 cut(s)	117, 250
FspBI	CTAG	2 cut(s)	417, 558
GlaI	GCGC	1 cut(s)	619
GluI	GCNGC	2 cut(s)	117, 250
GsaI	CCCAGC	1 cut(s)	349
HhaI	GCGC	1 cut(s)	620
Hin1II	CATG	8 cut(s)	24, 115, 217, 258, 430, 572, 775, 784
Hin6I	GCGC	1 cut(s)	618
HinP1I	GCGC	1 cut(s)	618
HindIII	AAGCTT	1 cut(s)	688
HinfI	GANTC	5 cut(s)	207, 273, 360, 413, 789
HphI	GGTGA	5 cut(s)	16, 347, 673, 754, 802
Hpy188I	TCNGA	2 cut(s)	197, 656
Hpy188III	TCNNGA	3 cut(s)	417, 539, 754
HpyAV	CCTTC	4 cut(s)	157, 391, 739, 756
HpyCH4III	ACNGT	3 cut(s)	81, 395, 476
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	2 cut(s)	166, 572
HpyF10VI	GCNNNNNNNGC	3 cut(s)	158, 593, 869
HpyF3I	CTNAG	2 cut(s)	364, 732
HpySE526I	ACGT	1 cut(s)	36
Hsp92II	CATG	8 cut(s)	24, 115, 217, 258, 430, 572, 775, 784
HspAI	GCGC	1 cut(s)	618
KroI	GCCGGC	2 cut(s)	152, 641
KroNI	GCCGGC	2 cut(s)	154, 643
Kzo9I	GATC	2 cut(s)	408, 519
LmnI	GCTCC	4 cut(s)	179, 434, 512, 748
Lsp1109I	GCAGC	2 cut(s)	103, 261
LweI	GCATC	2 cut(s)	434, 588
MaeI	CTAG	2 cut(s)	417, 558
MaeII	ACGT	1 cut(s)	36
MaeIII	GTNAC	3 cut(s)	335, 661, 808
MalI	GATC	2 cut(s)	410, 521
MboI	GATC	2 cut(s)	408, 519
MboII	GAAGA	3 cut(s)	129, 216, 514
MflI	RGATCY	1 cut(s)	519
MhlI	GDGCHC	7 cut(s)	306, 402, 439, 462, 517, 738, 753
MlsI	TGGCCA	2 cut(s)	587, 770
MluCI	AATT	1 cut(s)	636
MluNI	TGGCCA	2 cut(s)	587, 770
MlyI	GAGTC	4 cut(s)	216, 282, 354, 407
MnlI	CCTC	9 cut(s)	102, 210, 253, 523, 619, 652, 662, 677, 681
Mox20I	TGGCCA	2 cut(s)	587, 770
MroNI	GCCGGC	2 cut(s)	152, 641
MscI	TGGCCA	2 cut(s)	587, 770
Msp20I	TGGCCA	2 cut(s)	587, 770
MspA1I	CMGCKG	1 cut(s)	368
MspR9I	CCNGG	7 cut(s)	176, 177, 333, 681, 800, 857, 900
MvaI	CCWGG	2 cut(s)	800, 900
MwoI	GCNNNNNNNGC	3 cut(s)	158, 593, 869
NaeI	GCCGGC	2 cut(s)	154, 643
NciI	CCSGG	5 cut(s)	176, 177, 333, 681, 857
NcoI	CCATGG	2 cut(s)	111, 254
NdeII	GATC	2 cut(s)	408, 519
NgoMIV	GCCGGC	2 cut(s)	152, 641
NlaIII	CATG	8 cut(s)	24, 115, 217, 258, 430, 572, 775, 784
NlaIV	GGNNCC	5 cut(s)	181, 288, 514, 649, 822
NmuCI	GTSAC	3 cut(s)	335, 661, 808
PcsI	WCGNNNNNNNCGW	2 cut(s)	408, 492
PdiI	GCCGGC	2 cut(s)	154, 643
PfeI	GAWTC	1 cut(s)	789
PflFI	GACNNNGTC	1 cut(s)	857
PfoI	TCCNGGA	1 cut(s)	898
PkrI	GCNGC	2 cut(s)	118, 251
PleI	GAGTC	4 cut(s)	215, 281, 354, 407
PpsI	GAGTC	4 cut(s)	215, 281, 354, 407
Ppu21I	YACGTR	1 cut(s)	37
Psp124BI	GAGCTC	5 cut(s)	402, 439, 462, 738, 753
Psp6I	CCWGG	2 cut(s)	798, 898
PspEI	GGTNACC	1 cut(s)	661
PspFI	CCCAGC	1 cut(s)	345
PspGI	CCWGG	2 cut(s)	798, 898
PspN4I	GGNNCC	5 cut(s)	181, 288, 514, 649, 822
PspPI	GGNCC	7 cut(s)	263, 287, 423, 565, 647, 703, 821
PsuI	RGATCY	1 cut(s)	519
PsyI	GACNNNGTC	1 cut(s)	857
PvuII	CAGCTG	1 cut(s)	368
RsaI	GTAC	4 cut(s)	35, 39, 260, 281
RsaNI	GTAC	4 cut(s)	34, 38, 259, 280
SacI	GAGCTC	5 cut(s)	402, 439, 462, 738, 753
SatI	GCNGC	2 cut(s)	117, 250
Sau3AI	GATC	2 cut(s)	408, 519
Sau96I	GGNCC	7 cut(s)	263, 287, 423, 565, 647, 703, 821
ScaI	AGTACT	1 cut(s)	281
SchI	GAGTC	4 cut(s)	216, 282, 354, 407
ScrFI	CCNGG	7 cut(s)	176, 177, 333, 681, 800, 857, 900
SduI	GDGCHC	7 cut(s)	306, 402, 439, 462, 517, 738, 753
SfaNI	GCATC	2 cut(s)	434, 588
SinI	GGWCC	3 cut(s)	565, 647, 821
SmaI	CCCGGG	1 cut(s)	177
SmlI	CTYRAG	2 cut(s)	737, 752
SmoI	CTYRAG	2 cut(s)	737, 752
SnaBI	TACGTA	1 cut(s)	37
Sse9I	AATT	1 cut(s)	636
SsiI	CCGC	4 cut(s)	354, 469, 534, 645
SspMI	CTAG	2 cut(s)	417, 558
SstI	GAGCTC	5 cut(s)	402, 439, 462, 738, 753
StyD4I	CCNGG	7 cut(s)	174, 175, 331, 679, 798, 855, 898
StyI	CCWWGG	2 cut(s)	111, 254
TaaI	ACNGT	3 cut(s)	81, 395, 476
TaiI	ACGT	1 cut(s)	39
TaqI	TCGA	4 cut(s)	402, 411, 540, 693
TaqII	GACCGA	1 cut(s)	680
TasI	AATT	1 cut(s)	636
TatI	WGTACW	1 cut(s)	279
TfiI	GAWTC	1 cut(s)	789
TseFI	GTSAC	3 cut(s)	335, 661, 808
TseI	GCWGC	2 cut(s)	116, 249
Tsp45I	GTSAC	3 cut(s)	335, 661, 808
TspMI	CCCGGG	1 cut(s)	175
Tth111I	GACNNNGTC	1 cut(s)	857
VpaK11BI	GGWCC	3 cut(s)	565, 647, 821
XagI	CCTNNNNNAGG	1 cut(s)	656
XbaI	TCTAGA	1 cut(s)	416
XmaI	CCCGGG	1 cut(s)	175
XspI	CTAG	2 cut(s)	417, 558
ZrmI	AGTACT	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.