pycom10g22310

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0012588
Physical Location & Seq
Forward (+)
24716451 .. 24718252
1802 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 996 bp
ATGGGAGTTGGCTTGCTTCGGCATTCTGCGTTGTTTTTCTTGTTTCTTTTCTTTAGTTCAGGTTCAAGTGTTCCAAAGAATCCTCCTTTGGAAGCAACCCACCAAAGCAAAACGCAAGTGAATCAAGAAAAACATATAGTTTCCTCATCTTCGGTGTATACTACCCAGCTCGATGATATTCCCGTTGTCAATCCAAGTCCAACAACAACAACTCCCACACCATTTGCGAACCCGACAATATCCCCACCATCACCAACCACAACTCCAACCACAATACCACCGACCCCACCCCTCAGCCCAACAATTCCCACACCATTTGCAAACCCGACAATATCCCCACCATCACCAACCACAACTCCAACCACAATACCCCCGACCCCGCCCCTGAGCCCGACAACTCCCACCACAACTCCATCATCCCCAACAACTCCCACCACAACTCCATCATCAGGTGGTACTTGGTGTATTGCAAGCCAATCTGCTTCACAAAACGCCTTGCAGGTAGCTCTTGATTATGCTTGTGGCTATGGAGGTGTAGACTGTTCAGCAATTAATCAAGGTGGAAGCTGTTATAACCCAAACACTCTTCACGATCATGCTTCCTACGCCTTCAACGACTACTATCAGAAGAACCCATCTCCTACCAGCTGCAATTTCGGTGGAACAGCTCAACTCACCAACACTGACCCAAGTACTGGTAGCTGTCGCTTTGCATCTTCCTCATCATCAACCAGCATGAACTCACCACCAACAACAACGACACCACCAACGCCAACGATGTCAACAACACCACCAACGCCAACGATGTCAACAACACCACCAACAACAACATCCCCATACACCCCAAGCATCGCTACACCAGGTGGAGGATCAACAATTTATGGTGACTCGCCAACAGAGTCCCCGAACTCAGCAACCTCTATCTCATCTTGCATGCTACCGCTATTCATCATGACTGGGATCTTGGGGTCATTTCTCGCAGAAAATTATGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

332

Amino Acids

34.12

Weight (kDa)

5.06

Isoelectric Point (pI)

63.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 153 - 223 4.5e-21 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 573
Acc36I ACCTGC 1 cut(s) 490
AccB7I CCANNNNNTGG 1 cut(s) 695
AccI GTMKAC 2 cut(s) 158, 537
AciI CCGC 2 cut(s) 380, 941
AclWI GGATC 2 cut(s) 877, 968
AdeI CACNNNGTG 1 cut(s) 863
AfaI GTAC 2 cut(s) 457, 694
AfiI CCNNNNNNNGG 3 cut(s) 449, 695, 866
AgsI TTSAA 2 cut(s) 66, 613
AjnI CCWGG 1 cut(s) 859
AjuI GAANNNNNNNTTGG 2 cut(s) 71, 103
AluBI AGCT 6 cut(s) 169, 506, 567, 648, 668, 702
AluI AGCT 6 cut(s) 169, 506, 567, 648, 668, 702
AlwI GGATC 2 cut(s) 877, 968
ApeKI GCWGC 1 cut(s) 648
AseI ATTAAT 1 cut(s) 552
AsuHPI GGTGA 5 cut(s) 243, 336, 667, 735, 896
BanII GRGCYC 1 cut(s) 392
BbvCI CCTCAGC 1 cut(s) 293
BbvI GCAGC 1 cut(s) 635
BccI CCATC 5 cut(s) 256, 349, 421, 451, 643
BciT130I CCWGG 1 cut(s) 861
BfuAI ACCTGC 1 cut(s) 490
BisI GCNGC 1 cut(s) 649
BlsI GCNGC 1 cut(s) 650
BmcAI AGTACT 1 cut(s) 694
Bme1390I CCNGG 1 cut(s) 861
BmrFI CCNGG 1 cut(s) 861
BmrI ACTGGG 1 cut(s) 966
BmsI GCATC 2 cut(s) 722, 858
BmuI ACTGGG 1 cut(s) 966
Bpu10I CCTNAGC 2 cut(s) 293, 386
Bsc4I CCNNNNNNNGG 3 cut(s) 449, 695, 866
Bse1I ACTGG 2 cut(s) 700, 961
BseBI CCWGG 1 cut(s) 861
BseGI GGATG 2 cut(s) 416, 830
BseLI CCNNNNNNNGG 3 cut(s) 449, 695, 866
BseMII CTCAG 3 cut(s) 307, 377, 924
BseNI ACTGG 2 cut(s) 700, 961
BseXI GCAGC 1 cut(s) 635
BseYI CCCAGC 1 cut(s) 165
BslFI GGGAC 1 cut(s) 886
BslI CCNNNNNNNGG 3 cut(s) 449, 695, 866
BsmFI GGGAC 1 cut(s) 886
BsmI GAATGC 1 cut(s) 22
Bsp1286I GDGCHC 1 cut(s) 392
Bsp143I GATC 3 cut(s) 592, 869, 960
BspACI CCGC 2 cut(s) 380, 941
BspCNI CTCAG 3 cut(s) 306, 378, 923
BspHI TCATGA 1 cut(s) 951
BspMI ACCTGC 1 cut(s) 490
BspPI GGATC 2 cut(s) 877, 968
BsrI ACTGG 2 cut(s) 700, 961
BssMI GATC 3 cut(s) 592, 869, 960
BssNAI GTATAC 1 cut(s) 159
Bst1107I GTATAC 1 cut(s) 159
Bst2UI CCWGG 1 cut(s) 861
Bst4CI ACNGT 1 cut(s) 542
Bst6I CTCTTC 1 cut(s) 591
BstC8I GCNNGC 3 cut(s) 14, 472, 935
BstDEI CTNAG 3 cut(s) 293, 386, 910
BstF5I GGATG 2 cut(s) 416, 830
BstKTI GATC 3 cut(s) 595, 872, 963
BstMBI GATC 3 cut(s) 592, 869, 960
BstMWI GCNNNNNNNGC 1 cut(s) 605
BstNI CCWGG 1 cut(s) 861
BstNSI RCATGY 1 cut(s) 937
BstSCI CCNGG 1 cut(s) 859
BstV1I GCAGC 1 cut(s) 635
BstX2I RGATCY 1 cut(s) 960
BstYI RGATCY 1 cut(s) 960
BstZ17I GTATAC 1 cut(s) 159
BtgZI GCGATG 1 cut(s) 835
BtsCI GGATG 2 cut(s) 416, 830
BtsIMutI CAGTG 1 cut(s) 681
BveI ACCTGC 1 cut(s) 490
Cac8I GCNNGC 3 cut(s) 14, 472, 935
CciI TCATGA 1 cut(s) 951
CsiI ACCWGGT 1 cut(s) 859
Csp6I GTAC 2 cut(s) 456, 693
CspCI CAANNNNNGTGG 6 cut(s) 205, 240, 298, 333, 640, 675
CviAII CATG 4 cut(s) 596, 736, 934, 952
CviQI GTAC 2 cut(s) 456, 693
DdeI CTNAG 3 cut(s) 293, 386, 910
DpnI GATC 3 cut(s) 594, 871, 962
DpnII GATC 3 cut(s) 592, 869, 960
DraIII CACNNNGTG 1 cut(s) 863
Eam1104I CTCTTC 1 cut(s) 591
EarI CTCTTC 1 cut(s) 591
Eco24I GRGCYC 1 cut(s) 392
EcoRII CCWGG 1 cut(s) 859
EcoT38I GRGCYC 1 cut(s) 392
FaeI CATG 4 cut(s) 599, 739, 937, 955
FaqI GGGAC 1 cut(s) 886
FatI CATG 4 cut(s) 595, 735, 933, 951
FauI CCCGC 1 cut(s) 387
FblI GTMKAC 2 cut(s) 158, 537
Fnu4HI GCNGC 1 cut(s) 649
FokI GGATG 2 cut(s) 403, 817
FriOI GRGCYC 1 cut(s) 392
Fsp4HI GCNGC 1 cut(s) 649
GluI GCNGC 1 cut(s) 649
GsaI CCCAGC 1 cut(s) 169
Hin1II CATG 4 cut(s) 599, 739, 937, 955
HincII GTYRAC 2 cut(s) 783, 810
HindII GTYRAC 2 cut(s) 783, 810
HinfI GANTC 4 cut(s) 79, 121, 887, 899
HphI GGTGA 5 cut(s) 243, 336, 667, 735, 896
Hpy166II GTNNAC 4 cut(s) 159, 538, 783, 810
Hpy188I TCNGA 1 cut(s) 627
Hpy188III TCNNGA 4 cut(s) 125, 509, 590, 952
Hpy8I GTNNAC 4 cut(s) 159, 538, 783, 810
HpyAV CCTTC 1 cut(s) 619
HpyCH4III ACNGT 1 cut(s) 542
HpyCH4V TGCA 6 cut(s) 320, 470, 499, 651, 713, 933
HpyF10VI GCNNNNNNNGC 1 cut(s) 605
HpyF3I CTNAG 3 cut(s) 293, 386, 910
Hsp92II CATG 4 cut(s) 599, 739, 937, 955
Kzo9I GATC 3 cut(s) 592, 869, 960
Lsp1109I GCAGC 1 cut(s) 635
LweI GCATC 2 cut(s) 722, 858
MabI ACCWGGT 1 cut(s) 859
MaeIII GTNAC 1 cut(s) 884
MalI GATC 3 cut(s) 594, 871, 962
MboI GATC 3 cut(s) 592, 869, 960
MboII GAAGA 4 cut(s) 141, 578, 640, 708
MflI RGATCY 1 cut(s) 960
MhlI GDGCHC 1 cut(s) 392
MluCI AATT 5 cut(s) 303, 549, 652, 876, 985
MlyI GAGTC 2 cut(s) 881, 908
MmeI TCCRAC 3 cut(s) 224, 290, 383
MnlI CCTC 7 cut(s) 93, 154, 302, 524, 730, 860, 928
MseI TTAA 1 cut(s) 552
MslI CAYNNNNRTG 1 cut(s) 594
MspA1I CMGCKG 1 cut(s) 648
MspR9I CCNGG 1 cut(s) 861
Mva1269I GAATGC 1 cut(s) 22
MvaI CCWGG 1 cut(s) 861
MwoI GCNNNNNNNGC 1 cut(s) 605
NdeII GATC 3 cut(s) 592, 869, 960
NlaIII CATG 4 cut(s) 599, 739, 937, 955
NmuCI GTSAC 1 cut(s) 884
NspI RCATGY 1 cut(s) 937
PaeI GCATGC 1 cut(s) 937
PagI TCATGA 1 cut(s) 951
PcsI WCGNNNNNNNCGW 1 cut(s) 612
PctI GAATGC 1 cut(s) 22
PfeI GAWTC 2 cut(s) 79, 121
PflMI CCANNNNNTGG 1 cut(s) 695
PkrI GCNGC 1 cut(s) 650
PleI GAGTC 2 cut(s) 881, 907
PpsI GAGTC 2 cut(s) 881, 907
PshBI ATTAAT 1 cut(s) 552
PsiI TTATAA 1 cut(s) 573
Psp6I CCWGG 1 cut(s) 859
PspFI CCCAGC 1 cut(s) 165
PspGI CCWGG 1 cut(s) 859
PsuI RGATCY 1 cut(s) 960
PvuII CAGCTG 1 cut(s) 648
RsaI GTAC 2 cut(s) 457, 694
RsaNI GTAC 2 cut(s) 456, 693
RseI CAYNNNNRTG 1 cut(s) 594
SaqAI TTAA 1 cut(s) 552
SatI GCNGC 1 cut(s) 649
Sau3AI GATC 3 cut(s) 592, 869, 960
ScaI AGTACT 1 cut(s) 694
SchI GAGTC 2 cut(s) 881, 908
ScrFI CCNGG 1 cut(s) 861
SduI GDGCHC 1 cut(s) 392
SexAI ACCWGGT 1 cut(s) 859
SfaNI GCATC 2 cut(s) 722, 858
SmiMI CAYNNNNRTG 1 cut(s) 594
SphI GCATGC 1 cut(s) 937
Sse9I AATT 5 cut(s) 303, 549, 652, 876, 985
SsiI CCGC 2 cut(s) 380, 941
StyD4I CCNGG 1 cut(s) 859
TaaI ACNGT 1 cut(s) 542
TaqI TCGA 1 cut(s) 171
TasI AATT 5 cut(s) 303, 549, 652, 876, 985
TatI WGTACW 1 cut(s) 692
TfiI GAWTC 2 cut(s) 79, 121
Tru1I TTAA 1 cut(s) 552
Tru9I TTAA 1 cut(s) 552
TscAI CASTG 1 cut(s) 688
TseFI GTSAC 1 cut(s) 884
TseI GCWGC 1 cut(s) 648
Tsp45I GTSAC 1 cut(s) 884
TspDTI ATGAA 2 cut(s) 752, 937
TspRI CASTG 1 cut(s) 688
Van91I CCANNNNNTGG 1 cut(s) 695
VspI ATTAAT 1 cut(s) 552
XceI RCATGY 1 cut(s) 937
XmiI GTMKAC 2 cut(s) 158, 537
ZrmI AGTACT 1 cut(s) 694
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.