pycom10g22590

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0011961
Physical Location & Seq
Reverse (-)
24925057 .. 24925494
438 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 438 bp
ATGGCTGACTACGAGTTTCAAGAATCGGAGGTCATCTTCTCCATGGATAATCTTGACTTCGAAACCCGCTTGGATTTCCGGCGTCACCATCAAAACGACAAGTCGAATCTCTCGAAGAAGAAGAAAATGGGAAATGTTAACAACAACAACAACAGCAGCAGCAGCAACAATAATATTATCAAGTCGGTGCCGGTCAAAATCCCCGACAACATGTTCGACCGGTTCAGCGGCTCCGAGGACGACAGCAACGGTGATTACTACAAGGAGGAGCAGTGGGACGGGGGAGATATGGTGCCGCCGCATCTGATCGTGCGGCGGCGTATTGCAGGGAAGATGGCGTTCTCGATGTGCACAGGAAACGGGCGGCCGCTTAAAGGAAGGGCTTTGAGTCAAGTCCGGAATACGATTCTCAGAATGACTGGTTTCTTGGAAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

146

Amino Acids

16.61

Weight (kDa)

7.86

Isoelectric Point (pI)

50.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 33 - 144 3.2e-25 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011961)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G29640 AT2G34340 AT4G18980 AT5G45630
fragaria_vesca FvH4_3g06450
malus_domestica MD00G1093200.v1.1 MD10G1269600.v1.1
prunus_persica Prupe.4G072000_v2.0.a1
pyrus_communis pycom05g27010 pycom10g22590
rosa_chinensis RchiOBHm_Chr5g0012841
rosa_laevigata RLG00000031959
rosa_roxburghii Rroxscaffold_1G00063770
rosa_rugosa Rorug05G0004600
rosa_samantha Rh5AG098500 Rh5BG095300 Rh5CG107400 Rh5DG094100
rosa_wichuraiana Rw5G008610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 187, 292
AccIII TCCGGA 1 cut(s) 396
AciI CCGC 8 cut(s) 67, 228, 296, 299, 313, 316, 364, 368
AcoI YGGCCR 1 cut(s) 365
AcyI GRCGYC 1 cut(s) 82
AfiI CCNNNNNNNGG 1 cut(s) 374
AflIII ACRYGT 1 cut(s) 210
AgeI ACCGGT 1 cut(s) 219
AgsI TTSAA 1 cut(s) 20
AluBI AGCT 1 cut(s) 434
AluI AGCT 1 cut(s) 434
Alw21I GWGCWC 1 cut(s) 353
Alw44I GTGCAC 1 cut(s) 349
Aor13HI TCCGGA 1 cut(s) 396
AoxI GGCC 1 cut(s) 365
ApaLI GTGCAC 1 cut(s) 349
ApeKI GCWGC 3 cut(s) 156, 159, 162
ArsI GACNNNNNNTTYG 2 cut(s) 197, 229
AsiGI ACCGGT 1 cut(s) 219
AsuHPI GGTGA 2 cut(s) 77, 263
AsuII TTCGAA 1 cut(s) 60
BaeGI GKGCMC 1 cut(s) 353
BanI GGYRCC 2 cut(s) 187, 292
Bbv12I GWGCWC 1 cut(s) 353
BbvI GCAGC 3 cut(s) 168, 171, 174
BccI CCATC 2 cut(s) 96, 328
BmiI GGNNCC 3 cut(s) 189, 232, 294
BmsI GCATC 1 cut(s) 310
Bpu14I TTCGAA 1 cut(s) 60
BsaHI GRCGYC 1 cut(s) 82
BsaJI CCNNGG 2 cut(s) 42, 234
BsaWI WCCGGW 2 cut(s) 219, 396
BsaXI ACNNNNNCTCC 4 cut(s) 257, 276, 287, 306
Bsc4I CCNNNNNNNGG 1 cut(s) 374
Bse118I RCCGGY 2 cut(s) 190, 219
Bse1I ACTGG 1 cut(s) 424
BseAI TCCGGA 1 cut(s) 396
BseDI CCNNGG 2 cut(s) 42, 234
BseLI CCNNNNNNNGG 1 cut(s) 374
BseMII CTCAG 1 cut(s) 424
BseNI ACTGG 1 cut(s) 424
BseRI GAGGAG 1 cut(s) 281
BseSI GKGCMC 1 cut(s) 353
BseX3I CGGCCG 1 cut(s) 365
BseXI GCAGC 3 cut(s) 168, 171, 174
Bsh1285I CGRYCG 2 cut(s) 220, 368
BshFI GGCC 1 cut(s) 367
BshNI GGYRCC 2 cut(s) 187, 292
BshTI ACCGGT 1 cut(s) 219
BsiEI CGRYCG 2 cut(s) 220, 368
BsiHKAI GWGCWC 1 cut(s) 353
BsiSI CCGG 4 cut(s) 79, 191, 220, 397
BslFI GGGAC 1 cut(s) 290
BslI CCNNNNNNNGG 1 cut(s) 374
BsmFI GGGAC 1 cut(s) 290
BsnI GGCC 1 cut(s) 367
Bsp119I TTCGAA 1 cut(s) 60
Bsp1286I GDGCHC 1 cut(s) 353
Bsp13I TCCGGA 1 cut(s) 396
Bsp143I GATC 1 cut(s) 306
Bsp19I CCATGG 1 cut(s) 42
BspACI CCGC 8 cut(s) 67, 228, 296, 299, 313, 316, 364, 368
BspANI GGCC 1 cut(s) 367
BspCNI CTCAG 1 cut(s) 423
BspEI TCCGGA 1 cut(s) 396
BspLI GGNNCC 3 cut(s) 189, 232, 294
BspT104I TTCGAA 1 cut(s) 60
BspT107I GGYRCC 2 cut(s) 187, 292
BsrFI RCCGGY 2 cut(s) 190, 219
BsrI ACTGG 1 cut(s) 424
BssAI RCCGGY 2 cut(s) 190, 219
BssECI CCNNGG 2 cut(s) 42, 234
BssMI GATC 1 cut(s) 306
BssNI GRCGYC 1 cut(s) 82
BssT1I CCWWGG 1 cut(s) 42
Bst4CI ACNGT 1 cut(s) 251
BstACI GRCGYC 1 cut(s) 82
BstBI TTCGAA 1 cut(s) 60
BstDEI CTNAG 2 cut(s) 410, 435
BstDSI CCRYGG 1 cut(s) 42
BstKTI GATC 1 cut(s) 309
BstMBI GATC 1 cut(s) 306
BstMCI CGRYCG 2 cut(s) 220, 368
BstMWI GCNNNNNNNGC 1 cut(s) 162
BstNSI RCATGY 1 cut(s) 214
BstSLI GKGCMC 1 cut(s) 353
BstV1I GCAGC 3 cut(s) 168, 171, 174
BstZI CGGCCG 1 cut(s) 365
BsuRI GGCC 1 cut(s) 367
BtgI CCRYGG 1 cut(s) 42
BtsI GCAGTG 1 cut(s) 278
BtsIMutI CAGTG 1 cut(s) 278
CciNI GCGGCCGC 1 cut(s) 365
Cfr10I RCCGGY 2 cut(s) 190, 219
CseI GACGC 1 cut(s) 71
CspAI ACCGGT 1 cut(s) 219
CviAII CATG 2 cut(s) 43, 211
CviJI RGCY 5 cut(s) 5, 231, 367, 383, 434
CviKI_1 RGCY 5 cut(s) 5, 231, 367, 383, 434
DdeI CTNAG 2 cut(s) 410, 435
DpnI GATC 1 cut(s) 308
DpnII GATC 1 cut(s) 306
EaeI YGGCCR 1 cut(s) 365
EagI CGGCCG 1 cut(s) 365
EclXI CGGCCG 1 cut(s) 365
Eco130I CCWWGG 1 cut(s) 42
Eco52I CGGCCG 1 cut(s) 365
EcoT14I CCWWGG 1 cut(s) 42
ErhI CCWWGG 1 cut(s) 42
FaeI CATG 2 cut(s) 46, 214
FaiI YATR 3 cut(s) 44, 212, 290
FaqI GGGAC 1 cut(s) 290
FatI CATG 2 cut(s) 42, 210
FauI CCCGC 1 cut(s) 74
HaeIII GGCC 1 cut(s) 367
HapII CCGG 4 cut(s) 79, 191, 220, 397
HgaI GACGC 1 cut(s) 71
Hin1I GRCGYC 1 cut(s) 82
Hin1II CATG 2 cut(s) 46, 214
HincII GTYRAC 1 cut(s) 139
HindII GTYRAC 1 cut(s) 139
HindIII AAGCTT 1 cut(s) 432
HinfI GANTC 4 cut(s) 23, 106, 388, 406
HpaI GTTAAC 1 cut(s) 139
HpaII CCGG 4 cut(s) 79, 191, 220, 397
HphI GGTGA 2 cut(s) 77, 263
Hpy166II GTNNAC 2 cut(s) 139, 351
Hpy188I TCNGA 4 cut(s) 28, 235, 306, 413
Hpy188III TCNNGA 5 cut(s) 20, 53, 112, 343, 397
Hpy8I GTNNAC 2 cut(s) 139, 351
HpyAV CCTTC 1 cut(s) 372
HpyCH4III ACNGT 1 cut(s) 251
HpyCH4V TGCA 2 cut(s) 326, 351
HpyF10VI GCNNNNNNNGC 1 cut(s) 162
HpyF3I CTNAG 2 cut(s) 410, 435
Hsp92I GRCGYC 1 cut(s) 82
Hsp92II CATG 2 cut(s) 46, 214
Kpn2I TCCGGA 1 cut(s) 396
KspAI GTTAAC 1 cut(s) 139
Kzo9I GATC 1 cut(s) 306
LmnI GCTCC 2 cut(s) 236, 268
LpnPI CCDG 7 cut(s) 92, 204, 233, 312, 339, 405, 410
Lsp1109I GCAGC 3 cut(s) 168, 171, 174
LweI GCATC 1 cut(s) 310
MaeIII GTNAC 1 cut(s) 83
MalI GATC 1 cut(s) 308
MboI GATC 1 cut(s) 306
MboII GAAGA 5 cut(s) 28, 127, 130, 133, 343
MhlI GDGCHC 1 cut(s) 353
MlyI GAGTC 1 cut(s) 397
MnlI CCTC 3 cut(s) 22, 229, 259
MroI TCCGGA 1 cut(s) 396
MseI TTAA 2 cut(s) 138, 372
MspA1I CMGCKG 1 cut(s) 228
MspI CCGG 4 cut(s) 79, 191, 220, 397
MwoI GCNNNNNNNGC 1 cut(s) 162
NcoI CCATGG 1 cut(s) 42
NdeII GATC 1 cut(s) 306
NlaIII CATG 2 cut(s) 46, 214
NlaIV GGNNCC 3 cut(s) 189, 232, 294
NmuCI GTSAC 1 cut(s) 83
NotI GCGGCCGC 1 cut(s) 365
NspI RCATGY 1 cut(s) 214
NspV TTCGAA 1 cut(s) 60
PciI ACATGT 1 cut(s) 210
PcsI WCGNNNNNNNCGW 1 cut(s) 110
PfeI GAWTC 3 cut(s) 23, 106, 406
PinAI ACCGGT 1 cut(s) 219
PleI GAGTC 1 cut(s) 396
PpsI GAGTC 1 cut(s) 396
PscI ACATGT 1 cut(s) 210
PspN4I GGNNCC 3 cut(s) 189, 232, 294
SaqAI TTAA 2 cut(s) 138, 372
Sau3AI GATC 1 cut(s) 306
SchI GAGTC 1 cut(s) 397
SduI GDGCHC 1 cut(s) 353
SetI ASST 2 cut(s) 33, 436
SfaNI GCATC 1 cut(s) 310
SfuI TTCGAA 1 cut(s) 60
SsiI CCGC 8 cut(s) 67, 228, 296, 299, 313, 316, 364, 368
SspI AATATT 1 cut(s) 175
StyI CCWWGG 1 cut(s) 42
TaaI ACNGT 1 cut(s) 251
TaqI TCGA 5 cut(s) 60, 104, 113, 216, 344
TauI GCSGC 7 cut(s) 231, 298, 301, 316, 319, 367, 370
TfiI GAWTC 3 cut(s) 23, 106, 406
Tru1I TTAA 2 cut(s) 138, 372
Tru9I TTAA 2 cut(s) 138, 372
TscAI CASTG 1 cut(s) 278
TseFI GTSAC 1 cut(s) 83
TseI GCWGC 3 cut(s) 156, 159, 162
Tsp45I GTSAC 1 cut(s) 83
TspRI CASTG 1 cut(s) 278
VneI GTGCAC 1 cut(s) 349
XceI RCATGY 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.