pycom10g23340
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0003314
Physical Location & Seq
Forward (+)
25520187 .. 25521092
906 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 906 bp
ATGGGCGACCTAACCGACCTCCAAATAACGCCGTTCAATGCCGGCACCACCGCCTCCACCCCGCCCTCCTCCAAACCTCGCCCCATGCCCGTCCGCGAAGACTGCTGGAGCGAGGAAGCCACGTCCACTCTCGTCGACGCCTGGGGCCGCCGCTACATCGAGCTTAACCGCGGGAACCTCCGTCAGAAGGACTGGCAGGAGGTCGCTGACGCCGTCAACGCCCTCCACGGCCACACCAAGAAGACCCACCGGACGGACGTCCAGTGCAAGAACCGAATCGATACTATCAAGAAGAAGTACAAGGTGGAGAAGGTTAGGGTTTCGTCCTCCAACGGAACCCTAACCTCGTCGTGGCCTTTCTTCGAGAGGCTCGACGCTCTCATCGGATCTAATGTCAAGAAGGCGTCTCCTTCGCCTCACTCGCCTTCGCTGCCGGTCGCCGTTCCGTTGCCTTTGGGGTACCGGAAGACGCCGTCCTCGGCTCCGGTGGTGACGGCTGTGGCGCTTCCGCAGAAGCGGTCGGCATCGACTGCGGCGCTCGACGAGGGTTTCTTCAGGATGAATTACTCGGCTGTGGCTGCGGCTGCAGCCGCAGCCGCAGGGGCTGAGGATGAAGACGATGAGGACGAGGATGAGGACGATGACGATAACGATGAGGCCGATGAGGAGGTTGAGATGGCGAGGGATAGCGGAGGAGAGGTTGGAAGCGGTGGAGGAGGAGGAGAAGGGTTGAAGAGATTGGCGAGAGCGATTGAGAGGTTCGGGGAGGTGTATCAGAGAGTGGAGGCCGAGAAGTTGAGGCAGATGGTGGAGTTGGAGAAGCAGAGGATCGAATTCGCCAATGAATTGGAGGTAGAGAGGATGAGGATCGATCATGGACACGCAGGTCCAGCTCGAACGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_4

Protein Analysis

302

Amino Acids

32.96

Weight (kDa)

5.09

Isoelectric Point (pI)

45.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_4 PF13837 34 - 127 2.3e-19 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 885
AatII GACGTC 1 cut(s) 261
Acc36I ACCTGC 1 cut(s) 875
Acc65I GGTACC 1 cut(s) 459
AccB1I GGYRCC 2 cut(s) 44, 459
AccI GTMKAC 1 cut(s) 135
AccII CGCG 2 cut(s) 96, 171
AclWI GGATC 3 cut(s) 394, 836, 875
AcoI YGGCCR 1 cut(s) 229
AcsI RAATTY 1 cut(s) 833
AcuI CTGAAG 1 cut(s) 538
AcyI GRCGYC 5 cut(s) 138, 210, 258, 404, 470
AfaI GTAC 2 cut(s) 299, 461
AfiI CCNNNNNNNGG 3 cut(s) 187, 253, 351
AgsI TTSAA 2 cut(s) 37, 733
AjiI CACGTC 1 cut(s) 123
AjnI CCWGG 1 cut(s) 140
AluBI AGCT 2 cut(s) 163, 893
AluI AGCT 2 cut(s) 163, 893
Alw26I GTCTC 1 cut(s) 411
AlwI GGATC 3 cut(s) 394, 836, 875
AlwNI CAGNNNCTG 1 cut(s) 605
AoxI GGCC 5 cut(s) 145, 229, 353, 657, 786
ApeKI GCWGC 5 cut(s) 430, 578, 584, 587, 593
ApoI RAATTY 1 cut(s) 833
Asp718I GGTACC 1 cut(s) 459
AspLEI GCGC 2 cut(s) 505, 538
AspS9I GGNCC 2 cut(s) 145, 887
AsuHPI GGTGA 1 cut(s) 502
AvaII GGWCC 1 cut(s) 887
BanI GGYRCC 2 cut(s) 44, 459
BbsI GAAGAC 4 cut(s) 105, 248, 473, 621
BbvCI CCTCAGC 1 cut(s) 606
BbvI GCAGC 5 cut(s) 417, 565, 571, 599, 605
BccI CCATC 2 cut(s) 670, 799
BceAI ACGGC 6 cut(s) 16, 197, 244, 425, 457, 510
BciT130I CCWGG 1 cut(s) 142
BcoDI GTCTC 1 cut(s) 411
BfmI CTRYAG 1 cut(s) 585
BfoI RGCGCY 2 cut(s) 506, 539
BfuAI ACCTGC 1 cut(s) 875
BglI GCCNNNNNGGC 1 cut(s) 602
Bme1390I CCNGG 1 cut(s) 142
Bme18I GGWCC 1 cut(s) 887
BmgBI CACGTC 1 cut(s) 123
BmgT120I GGNCC 2 cut(s) 145, 887
BmiI GGNNCC 6 cut(s) 46, 146, 176, 337, 461, 483
BmrFI CCNGG 1 cut(s) 142
BmsI GCATC 1 cut(s) 533
BoxI GACNNNNGTC 1 cut(s) 257
BpiI GAAGAC 4 cut(s) 105, 248, 473, 621
BpmI CTGGAG 1 cut(s) 127
Bpu10I CCTNAGC 1 cut(s) 606
Bsa29I ATCGAT 2 cut(s) 279, 870
BsaBI GATNNNNATC 1 cut(s) 866
BsaHI GRCGYC 5 cut(s) 138, 210, 258, 404, 470
BsaJI CCNNGG 4 cut(s) 141, 169, 226, 477
BsaWI WCCGGW 3 cut(s) 249, 462, 484
BsaXI ACNNNNNCTCC 2 cut(s) 684, 714
Bsc4I CCNNNNNNNGG 3 cut(s) 187, 253, 351
Bse118I RCCGGY 2 cut(s) 41, 433
Bse1I ACTGG 2 cut(s) 197, 262
Bse8I GATNNNNATC 1 cut(s) 866
BseBI CCWGG 1 cut(s) 142
BseCI ATCGAT 2 cut(s) 279, 870
BseDI CCNNGG 4 cut(s) 141, 169, 226, 477
BseGI GGATG 4 cut(s) 564, 616, 637, 867
BseJI GATNNNNATC 1 cut(s) 866
BseLI CCNNNNNNNGG 3 cut(s) 187, 253, 351
BseMII CTCAG 1 cut(s) 597
BseNI ACTGG 2 cut(s) 197, 262
BseRI GAGGAG 6 cut(s) 58, 680, 708, 729, 732, 735
BseXI GCAGC 5 cut(s) 417, 565, 571, 599, 605
Bsh1236I CGCG 2 cut(s) 96, 171
Bsh1285I CGRYCG 2 cut(s) 438, 521
BshFI GGCC 5 cut(s) 147, 231, 355, 659, 788
BshNI GGYRCC 2 cut(s) 44, 459
BshVI ATCGAT 2 cut(s) 279, 870
BsiEI CGRYCG 2 cut(s) 438, 521
BsiSI CCGG 5 cut(s) 42, 250, 434, 463, 485
BslI CCNNNNNNNGG 3 cut(s) 187, 253, 351
BsmAI GTCTC 1 cut(s) 411
BsmBI CGTCTC 1 cut(s) 411
BsnI GGCC 5 cut(s) 147, 231, 355, 659, 788
Bsp143I GATC 4 cut(s) 386, 828, 867, 871
BspANI GGCC 5 cut(s) 147, 231, 355, 659, 788
BspCNI CTCAG 1 cut(s) 598
BspDI ATCGAT 2 cut(s) 279, 870
BspFNI CGCG 2 cut(s) 96, 171
BspLI GGNNCC 6 cut(s) 46, 146, 176, 337, 461, 483
BspMAI CTGCAG 1 cut(s) 589
BspMI ACCTGC 1 cut(s) 875
BspPI GGATC 3 cut(s) 394, 836, 875
BspT107I GGYRCC 2 cut(s) 44, 459
BsrFI RCCGGY 2 cut(s) 41, 433
BsrI ACTGG 2 cut(s) 197, 262
BssAI RCCGGY 2 cut(s) 41, 433
BssECI CCNNGG 4 cut(s) 141, 169, 226, 477
BssMI GATC 4 cut(s) 386, 828, 867, 871
BssNI GRCGYC 5 cut(s) 138, 210, 258, 404, 470
Bst2UI CCWGG 1 cut(s) 142
Bst6I CTCTTC 1 cut(s) 728
BstACI GRCGYC 5 cut(s) 138, 210, 258, 404, 470
BstAPI GCANNNNNTGC 1 cut(s) 530
BstC8I GCNNGC 1 cut(s) 43
BstDEI CTNAG 1 cut(s) 606
BstDSI CCRYGG 2 cut(s) 169, 226
BstF5I GGATG 4 cut(s) 564, 616, 637, 867
BstFNI CGCG 2 cut(s) 96, 171
BstH2I RGCGCY 2 cut(s) 506, 539
BstHHI GCGC 2 cut(s) 505, 538
BstKTI GATC 4 cut(s) 389, 831, 870, 874
BstMAI GTCTC 1 cut(s) 411
BstMBI GATC 4 cut(s) 386, 828, 867, 871
BstMCI CGRYCG 2 cut(s) 438, 521
BstNI CCWGG 1 cut(s) 142
BstPAI GACNNNNGTC 1 cut(s) 257
BstSCI CCNGG 1 cut(s) 140
BstSFI CTRYAG 1 cut(s) 585
BstUI CGCG 2 cut(s) 96, 171
BstV1I GCAGC 5 cut(s) 417, 565, 571, 599, 605
BstV2I GAAGAC 4 cut(s) 105, 248, 473, 621
BstX2I RGATCY 1 cut(s) 386
BstXI CCANNNNNNTGG 1 cut(s) 847
BstYI RGATCY 1 cut(s) 386
Bsu15I ATCGAT 2 cut(s) 279, 870
BsuRI GGCC 5 cut(s) 147, 231, 355, 659, 788
BsuTUI ATCGAT 2 cut(s) 279, 870
BtgI CCRYGG 2 cut(s) 169, 226
BtrI CACGTC 1 cut(s) 123
BtsCI GGATG 4 cut(s) 564, 616, 637, 867
BtsIMutI CAGTG 1 cut(s) 269
BveI ACCTGC 1 cut(s) 875
Cac8I GCNNGC 1 cut(s) 43
CaiI CAGNNNCTG 1 cut(s) 605
CfoI GCGC 2 cut(s) 505, 538
Cfr10I RCCGGY 2 cut(s) 41, 433
Cfr13I GGNCC 2 cut(s) 145, 887
Cfr42I CCGCGG 1 cut(s) 172
ClaI ATCGAT 2 cut(s) 279, 870
CseI GACGC 5 cut(s) 146, 218, 383, 393, 478
Csp6I GTAC 2 cut(s) 298, 460
CviAII CATG 2 cut(s) 85, 875
CviQI GTAC 2 cut(s) 298, 460
DdeI CTNAG 1 cut(s) 606
DpnI GATC 4 cut(s) 388, 830, 869, 873
DpnII GATC 4 cut(s) 386, 828, 867, 871
DrdI GACNNNNNNGTC 1 cut(s) 885
DseDI GACNNNNNNGTC 1 cut(s) 885
EaeI YGGCCR 1 cut(s) 229
Eam1104I CTCTTC 1 cut(s) 728
EarI CTCTTC 1 cut(s) 728
Eco47I GGWCC 1 cut(s) 887
Eco57I CTGAAG 1 cut(s) 538
EcoRI GAATTC 1 cut(s) 833
EcoRII CCWGG 1 cut(s) 140
Esp3I CGTCTC 1 cut(s) 411
FaeI CATG 2 cut(s) 88, 878
FaiI YATR 2 cut(s) 86, 876
FatI CATG 2 cut(s) 84, 874
FauI CCCGC 2 cut(s) 69, 164
FblI GTMKAC 1 cut(s) 135
FokI GGATG 4 cut(s) 571, 623, 644, 874
GlaI GCGC 2 cut(s) 504, 537
GsuI CTGGAG 1 cut(s) 127
HaeII RGCGCY 2 cut(s) 506, 539
HaeIII GGCC 5 cut(s) 147, 231, 355, 659, 788
HapII CCGG 5 cut(s) 42, 250, 434, 463, 485
HgaI GACGC 5 cut(s) 146, 218, 383, 393, 478
HhaI GCGC 2 cut(s) 505, 538
Hin1I GRCGYC 5 cut(s) 138, 210, 258, 404, 470
Hin1II CATG 2 cut(s) 88, 878
Hin6I GCGC 2 cut(s) 503, 536
HinP1I GCGC 2 cut(s) 503, 536
HincII GTYRAC 2 cut(s) 136, 217
HindII GTYRAC 2 cut(s) 136, 217
HinfI GANTC 1 cut(s) 276
HpaII CCGG 5 cut(s) 42, 250, 434, 463, 485
HphI GGTGA 1 cut(s) 502
Hpy166II GTNNAC 3 cut(s) 126, 136, 217
Hpy188I TCNGA 3 cut(s) 186, 386, 777
Hpy188III TCNNGA 4 cut(s) 289, 364, 397, 556
Hpy8I GTNNAC 3 cut(s) 126, 136, 217
Hpy99I CGWCG 5 cut(s) 137, 140, 352, 377, 545
HpyAV CCTTC 6 cut(s) 181, 304, 394, 420, 435, 719
HpyCH4IV ACGT 2 cut(s) 122, 258
HpyCH4V TGCA 2 cut(s) 267, 587
HpyF3I CTNAG 1 cut(s) 606
HpySE526I ACGT 2 cut(s) 122, 258
Hsp92I GRCGYC 5 cut(s) 138, 210, 258, 404, 470
Hsp92II CATG 2 cut(s) 88, 878
HspAI GCGC 2 cut(s) 503, 536
KpnI GGTACC 1 cut(s) 463
KroI GCCGGC 1 cut(s) 41
KroNI GCCGGC 1 cut(s) 43
KspI CCGCGG 1 cut(s) 172
Kzo9I GATC 4 cut(s) 386, 828, 867, 871
LmnI GCTCC 2 cut(s) 108, 487
Lsp1109I GCAGC 5 cut(s) 417, 565, 571, 599, 605
LweI GCATC 1 cut(s) 533
MaeII ACGT 2 cut(s) 122, 258
MaeIII GTNAC 1 cut(s) 490
MalI GATC 4 cut(s) 388, 830, 869, 873
MboI GATC 4 cut(s) 386, 828, 867, 871
MboII GAAGA 8 cut(s) 110, 253, 304, 352, 478, 544, 626, 745
MflI RGATCY 1 cut(s) 386
MluCI AATT 3 cut(s) 562, 833, 845
MmeI TCCRAC 3 cut(s) 354, 682, 795
MroNI GCCGGC 1 cut(s) 41
MseI TTAA 2 cut(s) 165, 904
MspA1I CMGCKG 1 cut(s) 171
MspI CCGG 5 cut(s) 42, 250, 434, 463, 485
MspR9I CCNGG 1 cut(s) 142
MvaI CCWGG 1 cut(s) 142
MvnI CGCG 2 cut(s) 96, 171
NaeI GCCGGC 1 cut(s) 43
NdeII GATC 4 cut(s) 386, 828, 867, 871
NgoMIV GCCGGC 1 cut(s) 41
NlaIII CATG 2 cut(s) 88, 878
NlaIV GGNNCC 6 cut(s) 46, 146, 176, 337, 461, 483
NmeAIII GCCGAG 3 cut(s) 458, 548, 814
NmuCI GTSAC 1 cut(s) 490
PcsI WCGNNNNNNNCGW 4 cut(s) 210, 369, 624, 657
PdiI GCCGGC 1 cut(s) 43
PfeI GAWTC 1 cut(s) 276
PflFI GACNNNGTC 2 cut(s) 212, 472
PshAI GACNNNNGTC 1 cut(s) 257
Psp6I CCWGG 1 cut(s) 140
PspGI CCWGG 1 cut(s) 140
PspN4I GGNNCC 6 cut(s) 46, 146, 176, 337, 461, 483
PspPI GGNCC 2 cut(s) 145, 887
PstI CTGCAG 1 cut(s) 589
PstNI CAGNNNCTG 1 cut(s) 605
PsuI RGATCY 1 cut(s) 386
PsyI GACNNNGTC 2 cut(s) 212, 472
RsaI GTAC 2 cut(s) 299, 461
RsaNI GTAC 2 cut(s) 298, 460
SacII CCGCGG 1 cut(s) 172
SalI GTCGAC 1 cut(s) 134
SaqAI TTAA 2 cut(s) 165, 904
Sau3AI GATC 4 cut(s) 386, 828, 867, 871
Sau96I GGNCC 2 cut(s) 145, 887
ScrFI CCNGG 1 cut(s) 142
SfaNI GCATC 1 cut(s) 533
SfcI CTRYAG 1 cut(s) 585
Sfr303I CCGCGG 1 cut(s) 172
SgrBI CCGCGG 1 cut(s) 172
SgrDI CGTCGACG 1 cut(s) 134
SinI GGWCC 1 cut(s) 887
Sse9I AATT 3 cut(s) 562, 833, 845
StyD4I CCNGG 1 cut(s) 140
TaiI ACGT 2 cut(s) 125, 261
TasI AATT 3 cut(s) 562, 833, 845
TatI WGTACW 1 cut(s) 297
TauI GCSGC 6 cut(s) 150, 153, 536, 584, 593, 599
TfiI GAWTC 1 cut(s) 276
Tru1I TTAA 2 cut(s) 165, 904
Tru9I TTAA 2 cut(s) 165, 904
TscAI CASTG 1 cut(s) 269
TseFI GTSAC 1 cut(s) 490
TseI GCWGC 5 cut(s) 430, 578, 584, 587, 593
Tsp45I GTSAC 1 cut(s) 490
TspDTI ATGAA 3 cut(s) 575, 627, 858
TspGWI ACGGA 4 cut(s) 170, 269, 348, 435
TspRI CASTG 1 cut(s) 269
Tth111I GACNNNGTC 2 cut(s) 212, 472
VpaK11BI GGWCC 1 cut(s) 887
XapI RAATTY 1 cut(s) 833
XmiI GTMKAC 1 cut(s) 135
ZraI GACGTC 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.