pycom10g23580

Protein CHUP1, chloroplastic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0012111
Physical Location & Seq
Reverse (-)
25674360 .. 25675852
1493 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g23580.1

Sequence Viewer

Length: 996 bp
ATGAAGAAAACGGCGTCGGATCGTGTGATTGGTTTTGAAAACGACGAGCTTTCGTCGTCGCAGAGATTTCAGGGACTGATGGACGTCACCGGAAGGTCGAATCTGATCAGAAATCTGAAGAGGGGAGTGAAATGCGCCGACATTCCGACAAATCCGGAGAATCAGAAGCTCGACGGCTCCGAGTCGAAGAGGGAAGAGCCGGAATCGGAGAGGCCGAGGCTGTCGAGGTGTAACTCGGAGGAGTTAGCCGAGTCGGCTCTGGCTACCATCAGATCTCGCATCCCAAGGGTTCCTAAACCGCCGCCGAGGCCGTCCACATCCAACGGTCAAAACAAGGCCTCAACAGAACAGGGGAATGCAGTTCCACCACCGCCTCCACCGCCGCCAAGTCAGACAAAATCCACACTCCCACCGCCACCGCCTCCGTCTAAGGCGGCTCCACCTCCGCCTCCTCCGCCACCGAGAGGTTTAAGGCCAGCGACGGCGAAGGTGAAGCGAGTGCCGGAGGTTGTGGAGTTCTACCACTCTCTGATGCGAAGAGACTCACGGAGGGAGTCCGGCAGCGGAGTCTCGGACGCAACGGGAACCGCCAATGCCCGCGACATGATCGGCGAGATCGAGAACCGGTCAGCTCACCTTCTTGCTATAAAAACGGACGTAGAAACGCAGGGAGATTTCATAAGGTTTTTGATAAAAGAAATCGAAAACGCAGCGTTTACAGACATCAACGATGTGGTGCCTTTTGTGAAGTGGCTGGATGATGAGCTCTCGTACTTGGTGGATGAAAGAGCGGTGCTGAAGCACTTTGACTGGCCGGAGCAGAAGGCGGATGCTCTGCGCGAAGCGGCATTTGGGTATTGCGATCGATCAAGAAGCTTGAATCGGAGGCCTCGTCGGAGCCTGATCATTCTCGCCAGCCCTGCGGTCCAACCCTCAAGAAGATGCAGGCTTTGCTGGAAAAATTGGAGCATGGGGTTTACAATCTCTCGCGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

332

Amino Acids

36.88

Weight (kDa)

9.59

Isoelectric Point (pI)

70.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18570 AT4G18570
fragaria_vesca FvH4_3g08000
malus_domestica MD05G1303500.v1.1 MD10G1282700.v1.1
prunus_persica Prupe.4G059200_v2.0.a1
pyrus_communis pycom05g28050 pycom10g23580
rosa_chinensis RchiOBHm_Chr5g0010311
rosa_laevigata RLG00000031736
rosa_multiflora Rmu_co8025906.1_g000001 Rmu_sc0012578.1_g000002
rosa_roxburghii Rroxscaffold_1G00065940
rosa_rugosa Rorug04G0450100
rosa_samantha Rh5AG081200 Rh5BG076100 Rh5CG089400 Rh5DG076800
rosa_wichuraiana Rw5G007520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 87
AccB1I GGYRCC 1 cut(s) 736
AccBSI CCGCTC 1 cut(s) 791
AccII CGCG 3 cut(s) 600, 840, 990
AccIII TCCGGA 1 cut(s) 154
AclWI GGATC 1 cut(s) 27
AcoI YGGCCR 1 cut(s) 812
AcuI CTGAAG 2 cut(s) 137, 818
AcyI GRCGYC 2 cut(s) 14, 84
AfaI GTAC 1 cut(s) 773
AfiI CCNNNNNNNGG 1 cut(s) 464
AgeI ACCGGT 1 cut(s) 624
AgsI TTSAA 2 cut(s) 38, 880
AjuI GAANNNNNNNTTGG 2 cut(s) 834, 866
AluBI AGCT 5 cut(s) 49, 169, 632, 766, 876
AluI AGCT 5 cut(s) 49, 169, 632, 766, 876
Alw21I GWGCWC 1 cut(s) 768
Alw26I GTCTC 2 cut(s) 534, 574
AlwI GGATC 1 cut(s) 27
AlwNI CAGNNNCTG 1 cut(s) 76
Aor13HI TCCGGA 1 cut(s) 154
AoxI GGCC 6 cut(s) 212, 308, 336, 473, 812, 887
ApeKI GCWGC 2 cut(s) 561, 710
AsiGI ACCGGT 1 cut(s) 624
AspLEI GCGC 2 cut(s) 137, 840
AspS9I GGNCC 1 cut(s) 925
AsuHPI GGTGA 3 cut(s) 79, 502, 626
AvaII GGWCC 1 cut(s) 925
BanI GGYRCC 1 cut(s) 736
BanII GRGCYC 1 cut(s) 768
Bbv12I GWGCWC 1 cut(s) 768
BbvI GCAGC 2 cut(s) 573, 722
BccI CCATC 2 cut(s) 73, 275
BceAI ACGGC 4 cut(s) 27, 190, 295, 498
BclI TGATCA 2 cut(s) 105, 903
BcoDI GTCTC 2 cut(s) 534, 574
BglI GCCNNNNNGGC 2 cut(s) 254, 307
BglII AGATCT 1 cut(s) 272
BisI GCNGC 6 cut(s) 302, 383, 435, 562, 711, 846
BlsI GCNGC 6 cut(s) 303, 384, 436, 563, 712, 847
Bme18I GGWCC 1 cut(s) 925
BmgT120I GGNCC 1 cut(s) 925
BmiI GGNNCC 6 cut(s) 178, 291, 438, 586, 738, 899
BmsI GCATC 4 cut(s) 288, 522, 820, 932
BpuEI CTTGAG 1 cut(s) 919
Bsa29I ATCGAT 1 cut(s) 865
BsaHI GRCGYC 2 cut(s) 14, 84
BsaJI CCNNGG 3 cut(s) 215, 284, 305
BsaWI WCCGGW 3 cut(s) 89, 154, 624
BsaXI ACNNNNNCTCC 2 cut(s) 877, 907
Bsc4I CCNNNNNNNGG 1 cut(s) 464
Bse118I RCCGGY 1 cut(s) 624
Bse1I ACTGG 1 cut(s) 815
BseAI TCCGGA 1 cut(s) 154
BseCI ATCGAT 1 cut(s) 865
BseDI CCNNGG 3 cut(s) 215, 284, 305
BseGI GGATG 5 cut(s) 279, 317, 763, 787, 835
BseLI CCNNNNNNNGG 1 cut(s) 464
BseNI ACTGG 1 cut(s) 815
BseRI GAGGAG 2 cut(s) 254, 441
BseXI GCAGC 2 cut(s) 573, 722
Bsh1236I CGCG 3 cut(s) 600, 840, 990
Bsh1285I CGRYCG 1 cut(s) 865
BshFI GGCC 6 cut(s) 214, 310, 338, 475, 814, 889
BshNI GGYRCC 1 cut(s) 736
BshTI ACCGGT 1 cut(s) 624
BshVI ATCGAT 1 cut(s) 865
BsiEI CGRYCG 1 cut(s) 865
BsiHKAI GWGCWC 1 cut(s) 768
BsiSI CCGG 7 cut(s) 90, 155, 200, 503, 558, 625, 815
BslFI GGGAC 1 cut(s) 87
BslI CCNNNNNNNGG 1 cut(s) 464
BsmAI GTCTC 2 cut(s) 534, 574
BsmFI GGGAC 1 cut(s) 87
BsmI GAATGC 1 cut(s) 361
BsnI GGCC 6 cut(s) 214, 310, 338, 475, 814, 889
Bsp1286I GDGCHC 1 cut(s) 768
Bsp13I TCCGGA 1 cut(s) 154
Bsp143I GATC 8 cut(s) 19, 105, 272, 606, 615, 862, 866, 903
BspANI GGCC 6 cut(s) 214, 310, 338, 475, 814, 889
BspDI ATCGAT 1 cut(s) 865
BspEI TCCGGA 1 cut(s) 154
BspFNI CGCG 3 cut(s) 600, 840, 990
BspLI GGNNCC 6 cut(s) 178, 291, 438, 586, 738, 899
BspPI GGATC 1 cut(s) 27
BspQI GCTCTTC 1 cut(s) 189
BspT107I GGYRCC 1 cut(s) 736
BsrBI CCGCTC 1 cut(s) 791
BsrFI RCCGGY 1 cut(s) 624
BsrI ACTGG 1 cut(s) 815
BssAI RCCGGY 1 cut(s) 624
BssECI CCNNGG 3 cut(s) 215, 284, 305
BssMI GATC 8 cut(s) 19, 105, 272, 606, 615, 862, 866, 903
BssNI GRCGYC 2 cut(s) 14, 84
BssT1I CCWWGG 1 cut(s) 284
Bst4CI ACNGT 1 cut(s) 326
Bst6I CTCTTC 4 cut(s) 113, 182, 189, 532
BstACI GRCGYC 2 cut(s) 14, 84
BstAPI GCANNNNNTGC 1 cut(s) 951
BstC8I GCNNGC 4 cut(s) 477, 598, 916, 947
BstDEI CTNAG 1 cut(s) 429
BstF5I GGATG 5 cut(s) 279, 317, 763, 787, 835
BstFNI CGCG 3 cut(s) 600, 840, 990
BstHHI GCGC 2 cut(s) 137, 840
BstKTI GATC 8 cut(s) 22, 108, 275, 609, 618, 865, 869, 906
BstMAI GTCTC 2 cut(s) 534, 574
BstMBI GATC 8 cut(s) 19, 105, 272, 606, 615, 862, 866, 903
BstMCI CGRYCG 1 cut(s) 865
BstMWI GCNNNNNNNGC 6 cut(s) 254, 307, 379, 454, 920, 951
BstUI CGCG 3 cut(s) 600, 840, 990
BstV1I GCAGC 2 cut(s) 573, 722
BstX2I RGATCY 1 cut(s) 272
BstYI RGATCY 1 cut(s) 272
Bsu15I ATCGAT 1 cut(s) 865
BsuRI GGCC 6 cut(s) 214, 310, 338, 475, 814, 889
BsuTUI ATCGAT 1 cut(s) 865
BtsCI GGATG 5 cut(s) 279, 317, 763, 787, 835
Cac8I GCNNGC 4 cut(s) 477, 598, 916, 947
CaiI CAGNNNCTG 1 cut(s) 76
CfoI GCGC 2 cut(s) 137, 840
Cfr10I RCCGGY 1 cut(s) 624
Cfr13I GGNCC 1 cut(s) 925
ClaI ATCGAT 1 cut(s) 865
CseI GACGC 2 cut(s) 3, 584
Csp6I GTAC 1 cut(s) 772
CspAI ACCGGT 1 cut(s) 624
CviAII CATG 2 cut(s) 604, 970
CviQI GTAC 1 cut(s) 772
DdeI CTNAG 1 cut(s) 429
DpnI GATC 8 cut(s) 21, 107, 274, 608, 617, 864, 868, 905
DpnII GATC 8 cut(s) 19, 105, 272, 606, 615, 862, 866, 903
EaeI YGGCCR 1 cut(s) 812
Eam1104I CTCTTC 4 cut(s) 113, 182, 189, 532
EarI CTCTTC 4 cut(s) 113, 182, 189, 532
EciI GGCGGA 3 cut(s) 435, 444, 842
Ecl136II GAGCTC 1 cut(s) 766
Eco130I CCWWGG 1 cut(s) 284
Eco147I AGGCCT 2 cut(s) 338, 889
Eco24I GRGCYC 1 cut(s) 768
Eco47I GGWCC 1 cut(s) 925
Eco53kI GAGCTC 1 cut(s) 766
Eco57I CTGAAG 2 cut(s) 137, 818
EcoICRI GAGCTC 1 cut(s) 766
EcoT14I CCWWGG 1 cut(s) 284
EcoT38I GRGCYC 1 cut(s) 768
ErhI CCWWGG 1 cut(s) 284
FaeI CATG 2 cut(s) 607, 973
FaiI YATR 4 cut(s) 605, 647, 680, 971
FaqI GGGAC 1 cut(s) 87
FatI CATG 2 cut(s) 603, 969
FauI CCCGC 2 cut(s) 605, 983
FbaI TGATCA 2 cut(s) 105, 903
Fnu4HI GCNGC 6 cut(s) 302, 383, 435, 562, 711, 846
FokI GGATG 5 cut(s) 266, 304, 770, 794, 842
FriOI GRGCYC 1 cut(s) 768
Fsp4HI GCNGC 6 cut(s) 302, 383, 435, 562, 711, 846
GlaI GCGC 2 cut(s) 136, 839
GluI GCNGC 6 cut(s) 302, 383, 435, 562, 711, 846
HaeIII GGCC 6 cut(s) 214, 310, 338, 475, 814, 889
HapII CCGG 7 cut(s) 90, 155, 200, 503, 558, 625, 815
HgaI GACGC 2 cut(s) 3, 584
HhaI GCGC 2 cut(s) 137, 840
Hin1I GRCGYC 2 cut(s) 14, 84
Hin1II CATG 2 cut(s) 607, 973
Hin6I GCGC 2 cut(s) 135, 838
HinP1I GCGC 2 cut(s) 135, 838
HindIII AAGCTT 1 cut(s) 874
HinfI GANTC 9 cut(s) 100, 160, 182, 203, 251, 542, 554, 567, 880
HpaII CCGG 7 cut(s) 90, 155, 200, 503, 558, 625, 815
HphI GGTGA 3 cut(s) 79, 502, 626
Hpy166II GTNNAC 3 cut(s) 315, 717, 978
Hpy188III TCNNGA 4 cut(s) 155, 619, 870, 936
Hpy8I GTNNAC 3 cut(s) 315, 717, 978
Hpy99I CGWCG 7 cut(s) 19, 47, 58, 61, 176, 484, 897
HpyAV CCTTC 4 cut(s) 87, 481, 647, 817
HpyCH4III ACNGT 1 cut(s) 326
HpyCH4IV ACGT 2 cut(s) 84, 657
HpyCH4V TGCA 2 cut(s) 359, 945
HpyF10VI GCNNNNNNNGC 6 cut(s) 254, 307, 379, 454, 920, 951
HpyF3I CTNAG 1 cut(s) 429
HpySE526I ACGT 2 cut(s) 84, 657
Hsp92I GRCGYC 2 cut(s) 14, 84
Hsp92II CATG 2 cut(s) 607, 973
HspAI GCGC 2 cut(s) 135, 838
Kpn2I TCCGGA 1 cut(s) 154
Ksp22I TGATCA 2 cut(s) 105, 903
Kzo9I GATC 8 cut(s) 19, 105, 272, 606, 615, 862, 866, 903
LguI GCTCTTC 1 cut(s) 189
LmnI GCTCC 5 cut(s) 182, 442, 817, 897, 966
Lsp1109I GCAGC 2 cut(s) 573, 722
LweI GCATC 4 cut(s) 288, 522, 820, 932
MaeII ACGT 2 cut(s) 84, 657
MaeIII GTNAC 2 cut(s) 85, 230
MalI GATC 8 cut(s) 21, 107, 274, 608, 617, 864, 868, 905
MbiI CCGCTC 1 cut(s) 791
MboI GATC 8 cut(s) 19, 105, 272, 606, 615, 862, 866, 903
MboII GAAGA 6 cut(s) 16, 130, 199, 206, 549, 951
MflI RGATCY 1 cut(s) 272
MhlI GDGCHC 1 cut(s) 768
MluCI AATT 1 cut(s) 961
MlyI GAGTC 5 cut(s) 191, 260, 536, 563, 576
MmeI TCCRAC 4 cut(s) 170, 345, 875, 952
MroI TCCGGA 1 cut(s) 154
MseI TTAA 1 cut(s) 470
MspA1I CMGCKG 1 cut(s) 564
MspI CCGG 7 cut(s) 90, 155, 200, 503, 558, 625, 815
Mva1269I GAATGC 1 cut(s) 361
MvnI CGCG 3 cut(s) 600, 840, 990
MwoI GCNNNNNNNGC 6 cut(s) 254, 307, 379, 454, 920, 951
NdeII GATC 8 cut(s) 19, 105, 272, 606, 615, 862, 866, 903
NlaIII CATG 2 cut(s) 607, 973
NlaIV GGNNCC 6 cut(s) 178, 291, 438, 586, 738, 899
NmeAIII GCCGAG 3 cut(s) 240, 274, 330
NmuCI GTSAC 1 cut(s) 85
PceI AGGCCT 2 cut(s) 338, 889
PciSI GCTCTTC 1 cut(s) 189
PcsI WCGNNNNNNNCGW 4 cut(s) 177, 212, 615, 889
PctI GAATGC 1 cut(s) 361
PfeI GAWTC 4 cut(s) 100, 160, 203, 880
PinAI ACCGGT 1 cut(s) 624
PkrI GCNGC 6 cut(s) 303, 384, 436, 563, 712, 847
Ple19I CGATCG 1 cut(s) 865
PleI GAGTC 5 cut(s) 190, 259, 536, 562, 575
PpsI GAGTC 5 cut(s) 190, 259, 536, 562, 575
Psp124BI GAGCTC 1 cut(s) 768
PspN4I GGNNCC 6 cut(s) 178, 291, 438, 586, 738, 899
PspPI GGNCC 1 cut(s) 925
PstNI CAGNNNCTG 1 cut(s) 76
PsuI RGATCY 1 cut(s) 272
PvuI CGATCG 1 cut(s) 865
RsaI GTAC 1 cut(s) 773
RsaNI GTAC 1 cut(s) 772
SacI GAGCTC 1 cut(s) 768
SapI GCTCTTC 1 cut(s) 189
SaqAI TTAA 1 cut(s) 470
SatI GCNGC 6 cut(s) 302, 383, 435, 562, 711, 846
Sau3AI GATC 8 cut(s) 19, 105, 272, 606, 615, 862, 866, 903
Sau96I GGNCC 1 cut(s) 925
SchI GAGTC 5 cut(s) 191, 260, 536, 563, 576
SduI GDGCHC 1 cut(s) 768
SfaNI GCATC 4 cut(s) 288, 522, 820, 932
SinI GGWCC 1 cut(s) 925
SmlI CTYRAG 1 cut(s) 934
SmoI CTYRAG 1 cut(s) 934
Sse9I AATT 1 cut(s) 961
SseBI AGGCCT 2 cut(s) 338, 889
SstI GAGCTC 1 cut(s) 768
StuI AGGCCT 2 cut(s) 338, 889
StyI CCWWGG 1 cut(s) 284
TaaI ACNGT 1 cut(s) 326
TaiI ACGT 2 cut(s) 87, 660
TaqI TCGA 7 cut(s) 98, 171, 185, 224, 618, 702, 865
TasI AATT 1 cut(s) 961
TauI GCSGC 4 cut(s) 304, 385, 437, 848
TfiI GAWTC 4 cut(s) 100, 160, 203, 880
Tru1I TTAA 1 cut(s) 470
Tru9I TTAA 1 cut(s) 470
TseFI GTSAC 1 cut(s) 85
TseI GCWGC 2 cut(s) 561, 710
Tsp45I GTSAC 1 cut(s) 85
TspDTI ATGAA 3 cut(s) 17, 667, 798
TspGWI ACGGA 3 cut(s) 414, 562, 668
VpaK11BI GGWCC 1 cut(s) 925
ZraI GACGTC 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.