Rmu_sc0012578.1_g000002

Protein CHUP1, chloroplastic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012578.1
OG0012111
Physical Location & Seq
Reverse (-)
4615 .. 7926
3312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012578.1_g000002.1.cds

Sequence Viewer

Length: 1848 bp
atggtagctgggaaggtgagggtagcaatggggttacagaaatccccatcgccggcgcctagtagtaagccagagccgcctccgaagccgccgtcgccttcagtgagttccggcaagtcgtcgcagaaggcggtgttctcacgctcctttggcgtgtacttcccccgctcctccgcgcaggtccagcccaagccgccggacgtgacggagctgctccgactagtggaggagctccgggaccgggagtcgaggctgaagacggagcttctggagtacaagctgctgaaggagtcggtcgccattgttccggtgctggaaaaccagatctttaacaaggacgaggagattgggagagccaacagaaagattgaagtgcttgagagcgagaacaggaggttgaggagtgaagcggagttggttagggtggagttggaggaagagaggagggagagcgagaataaagtggaggaaatggaggcgaaaatcaaagctatccaggcggagatttcggagatgaagaaggcggcgtcggaaagcgacgagctttcgtcgtcgcagagatttcagggactgatggaggtgtccgttaggtccaatctgatcaagaacttgaagaagggagtgaaatgtacggacatcagtgcaagcctggagaatcagcaaagactggaacgctcggattcgaagagagaggaagttgagattgaaatgccgagacactccaggtgcaactcggaggatttcgccgagccgactctgtctactctcagatctcgaatccctagggttccgaaaccgccgccgagaccgtcgtcgtcgtcatccaacggtgaaaacaaggcctctacaacaggagagcaagccaacattccacctccgcctccgccgccgcgaccggctcaggcgaaggtggcacctccaccgccgcctccaccgtcacgatcggcgccgcctcctccaccgccgccgccgaaggggaggaagacggtgacggagaaggtgaggcgagtgccggaggttgtggagttttaccactctctgatgcggagggattctcggagagactccggtaccggagcttccgacgcaccggccaccgccaatgcccgtgacatgatcggagagatcgagaaccgctctgctcacttgctcgctatcaaaacggatgtagaaacgcagggagatttcataaggtttttgatcaaagaagtcgagaatgcagcgtttacagacattaacgatgttgtgccttttgtcaaatggctggatgatgagctctcttatttggtggatgaaagagctgtgcttaagcattttgactggccggagcagaaggctgacgctctgcgtgaggctgcattcgggtattgcgatctcaagaagcttgaaacagaggcttctttgttccctgaccattctcgccagccctgcggtccaacccttaagaagatgcaggctttgcttgaaaaattggagcatggtgtttacaacctttcgaggatgagagaatccgcgacgaaaagatacaaagttttccagattcctacaaattggatgctggatactgagtttgtaagccagatcaagctggcatccgtaaaattggcaatgaagtatatgaagagagtctctgcggagctggaaatagtaggtggtggtggcccagaagaagaagagctgatagttcaaggcgttcgatttgccttccgtgtgcatcagtttgctggtggtttcgatgcagaaacgatgagagctttccaggtattgagagataaagtgagatcatgccatgtacagtgccaaaaccagcaacagcaaaaatttgtttgcaagtccacaccatgctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

615

Amino Acids

69.14

Weight (kDa)

8.77

Isoelectric Point (pI)

65.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18570 AT4G18570
fragaria_vesca FvH4_3g08000
malus_domestica MD05G1303500.v1.1 MD10G1282700.v1.1
prunus_persica Prupe.4G059200_v2.0.a1
pyrus_communis pycom05g28050 pycom10g23580
rosa_chinensis RchiOBHm_Chr5g0010311
rosa_laevigata RLG00000031736
rosa_multiflora Rmu_co8025906.1_g000001 Rmu_sc0012578.1_g000002
rosa_roxburghii Rroxscaffold_1G00065940
rosa_rugosa Rorug04G0450100
rosa_samantha Rh5AG081200 Rh5BG076100 Rh5CG089400 Rh5DG076800
rosa_wichuraiana Rw5G007520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 169
Acc65I GGTACC 1 cut(s) 1070
AccB1I GGYRCC 4 cut(s) 55, 913, 946, 1070
AccBSI CCGCTC 2 cut(s) 168, 1137
AccI GTMKAC 1 cut(s) 761
AccII CGCG 3 cut(s) 176, 892, 1514
AcoI YGGCCR 2 cut(s) 1092, 1322
AcsI RAATTY 1 cut(s) 1820
AcuI CTGAAG 3 cut(s) 84, 275, 305
AcyI GRCGYC 3 cut(s) 56, 527, 947
AfaI GTAC 5 cut(s) 158, 275, 631, 1072, 1794
AfiI CCNNNNNNNGG 4 cut(s) 52, 223, 241, 974
AflII CTTAAG 2 cut(s) 1307, 1442
AgsI TTSAA 6 cut(s) 371, 613, 707, 1388, 1466, 1688
AhdI GACNNNNNGTC 1 cut(s) 244
AhlI ACTAGT 1 cut(s) 220
AjiI CACGTC 1 cut(s) 202
AjnI CCWGG 4 cut(s) 495, 648, 722, 1758
Alw21I GWGCWC 2 cut(s) 234, 1278
Alw26I GTCTC 4 cut(s) 709, 799, 1056, 1633
AlwNI CAGNNNCTG 1 cut(s) 571
AoxI GGCC 4 cut(s) 840, 1092, 1322, 1660
ApeKI GCWGC 4 cut(s) 211, 280, 1220, 1355
ApoI RAATTY 1 cut(s) 1820
ArsI GACNNNNNNTTYG 2 cut(s) 77, 109
Asp718I GGTACC 1 cut(s) 1070
AspA2I CCTAGG 1 cut(s) 782
AspLEI GCGC 3 cut(s) 58, 178, 949
AspS9I GGNCC 5 cut(s) 181, 238, 591, 1433, 1661
AsuC2I CCSGG 2 cut(s) 236, 242
AsuHPI GGTGA 4 cut(s) 28, 842, 1000, 1012
AsuII TTCGAA 1 cut(s) 683
AvaII GGWCC 4 cut(s) 181, 238, 591, 1433
AvrII CCTAGG 1 cut(s) 782
BaeI ACNNNNGTAYC 2 cut(s) 1054, 1087
BanI GGYRCC 4 cut(s) 55, 913, 946, 1070
BanII GRGCYC 2 cut(s) 234, 1278
BarI GAAGNNNNNNTAC 2 cut(s) 1063, 1095
BbsI GAAGAC 2 cut(s) 263, 989
Bbv12I GWGCWC 2 cut(s) 234, 1278
BbvI GCAGC 4 cut(s) 198, 267, 1232, 1342
BccI CCATC 2 cut(s) 55, 568
BceAI ACGGC 1 cut(s) 76
BciT130I CCWGG 4 cut(s) 497, 650, 724, 1760
BciVI GTATCC 1 cut(s) 1555
BclI TGATCA 2 cut(s) 600, 1200
BcnI CCSGG 2 cut(s) 236, 242
BcoDI GTCTC 4 cut(s) 709, 799, 1056, 1633
BcuI ACTAGT 1 cut(s) 220
BfaI CTAG 3 cut(s) 60, 221, 783
BfoI RGCGCY 2 cut(s) 59, 950
BfrI CTTAAG 2 cut(s) 1307, 1442
BfuAI ACCTGC 1 cut(s) 169
BfuI GTATCC 1 cut(s) 1555
BglII AGATCT 2 cut(s) 324, 770
BlnI CCTAGG 1 cut(s) 782
Bme1390I CCNGG 6 cut(s) 236, 242, 497, 650, 724, 1760
Bme18I GGWCC 4 cut(s) 181, 238, 591, 1433
BmeRI GACNNNNNGTC 1 cut(s) 244
BmgBI CACGTC 1 cut(s) 202
BmgT120I GGNCC 5 cut(s) 181, 238, 591, 1433, 1661
BmiI GGNNCC 6 cut(s) 57, 239, 789, 915, 948, 1072
BmrFI CCNGG 6 cut(s) 236, 242, 497, 650, 724, 1760
BmsI GCATC 6 cut(s) 1032, 1440, 1545, 1601, 1723, 1726
BoxI GACNNNNGTC 1 cut(s) 811
BpiI GAAGAC 2 cut(s) 263, 989
BplI GAGNNNNNCTC 4 cut(s) 1039, 1071, 1121, 1153
BpmI CTGGAG 3 cut(s) 290, 671, 706
Bpu10I CCTNAGC 1 cut(s) 900
Bpu14I TTCGAA 1 cut(s) 683
BpuEI CTTGAG 2 cut(s) 398, 1361
BpuMI CCSGG 2 cut(s) 236, 242
BsaHI GRCGYC 3 cut(s) 56, 527, 947
BsaI GGTCTC 1 cut(s) 799
BsaJI CCNNGG 1 cut(s) 782
BsaWI WCCGGW 3 cut(s) 307, 1067, 1073
Bsc4I CCNNNNNNNGG 4 cut(s) 52, 223, 241, 974
Bse118I RCCGGY 3 cut(s) 52, 895, 1090
Bse1I ACTGG 2 cut(s) 672, 1325
Bse3DI GCAATG 2 cut(s) 33, 1614
BseBI CCWGG 4 cut(s) 497, 650, 724, 1760
BseDI CCNNGG 1 cut(s) 782
BseGI GGATG 7 cut(s) 821, 1171, 1273, 1297, 1506, 1560, 1592
BseLI CCNNNNNNNGG 4 cut(s) 52, 223, 241, 974
BseMI GCAATG 2 cut(s) 33, 1614
BseMII CTCAG 3 cut(s) 781, 914, 1557
BseNI ACTGG 2 cut(s) 672, 1325
BseRI GAGGAG 6 cut(s) 160, 242, 356, 415, 457, 945
BseXI GCAGC 4 cut(s) 198, 267, 1232, 1342
BseYI CCCAGC 1 cut(s) 8
Bsh1236I CGCG 3 cut(s) 176, 892, 1514
Bsh1285I CGRYCG 3 cut(s) 297, 896, 944
BshFI GGCC 4 cut(s) 842, 1094, 1324, 1662
BshNI GGYRCC 4 cut(s) 55, 913, 946, 1070
BsiEI CGRYCG 3 cut(s) 297, 896, 944
BsiHKAI GWGCWC 2 cut(s) 234, 1278
BslFI GGGAC 2 cut(s) 251, 582
BslI CCNNNNNNNGG 4 cut(s) 52, 223, 241, 974
BsmAI GTCTC 4 cut(s) 709, 799, 1056, 1633
BsmFI GGGAC 2 cut(s) 251, 582
BsmI GAATGC 2 cut(s) 1222, 1358
BsnI GGCC 4 cut(s) 842, 1094, 1324, 1662
Bso31I GGTCTC 1 cut(s) 799
Bsp119I TTCGAA 1 cut(s) 683
Bsp1286I GDGCHC 2 cut(s) 234, 1278
Bsp1407I TGTACA 1 cut(s) 1792
BspANI GGCC 4 cut(s) 842, 1094, 1324, 1662
BspCNI CTCAG 3 cut(s) 780, 913, 1558
BspFNI CGCG 3 cut(s) 176, 892, 1514
BspLI GGNNCC 6 cut(s) 57, 239, 789, 915, 948, 1072
BspMI ACCTGC 1 cut(s) 169
BspQI GCTCTTC 1 cut(s) 1668
BspT104I TTCGAA 1 cut(s) 683
BspT107I GGYRCC 4 cut(s) 55, 913, 946, 1070
BspTI CTTAAG 2 cut(s) 1307, 1442
BspTNI GGTCTC 1 cut(s) 799
BsrBI CCGCTC 2 cut(s) 168, 1137
BsrDI GCAATG 2 cut(s) 33, 1614
BsrFI RCCGGY 3 cut(s) 52, 895, 1090
BsrGI TGTACA 1 cut(s) 1792
BsrI ACTGG 2 cut(s) 672, 1325
BssAI RCCGGY 3 cut(s) 52, 895, 1090
BssECI CCNNGG 1 cut(s) 782
BssNI GRCGYC 3 cut(s) 56, 527, 947
BssT1I CCWWGG 1 cut(s) 782
Bst2UI CCWGG 4 cut(s) 497, 650, 724, 1760
Bst4CI ACNGT 5 cut(s) 810, 830, 936, 988, 1797
Bst6I CTCTTC 4 cut(s) 432, 680, 1616, 1668
BstACI GRCGYC 3 cut(s) 56, 527, 947
BstAFI CTTAAG 2 cut(s) 1307, 1442
BstAPI GCANNNNNTGC 1 cut(s) 1459
BstAUI TGTACA 1 cut(s) 1792
BstBI TTCGAA 1 cut(s) 683
BstC8I GCNNGC 7 cut(s) 54, 646, 861, 1152, 1424, 1455, 1590
BstDEI CTNAG 3 cut(s) 767, 900, 1566
BstF5I GGATG 7 cut(s) 821, 1171, 1273, 1297, 1506, 1560, 1592
BstFNI CGCG 3 cut(s) 176, 892, 1514
BstH2I RGCGCY 2 cut(s) 59, 950
BstHHI GCGC 3 cut(s) 58, 178, 949
BstMAI GTCTC 4 cut(s) 709, 799, 1056, 1633
BstMCI CGRYCG 3 cut(s) 297, 896, 944
BstNI CCWGG 4 cut(s) 497, 650, 724, 1760
BstPAI GACNNNNGTC 1 cut(s) 811
BstSCI CCNGG 6 cut(s) 234, 240, 495, 648, 722, 1758
BstUI CGCG 3 cut(s) 176, 892, 1514
BstV1I GCAGC 4 cut(s) 198, 267, 1232, 1342
BstV2I GAAGAC 2 cut(s) 263, 989
BstX2I RGATCY 2 cut(s) 324, 770
BstYI RGATCY 2 cut(s) 324, 770
BsuI GTATCC 1 cut(s) 1555
BsuRI GGCC 4 cut(s) 842, 1094, 1324, 1662
BtgZI GCGATG 1 cut(s) 33
BtrI CACGTC 1 cut(s) 202
BtsCI GGATG 7 cut(s) 821, 1171, 1273, 1297, 1506, 1560, 1592
BtsIMutI CAGTG 3 cut(s) 108, 646, 1802
BveI ACCTGC 1 cut(s) 169
Cac8I GCNNGC 7 cut(s) 54, 646, 861, 1152, 1424, 1455, 1590
CaiI CAGNNNCTG 1 cut(s) 571
CfoI GCGC 3 cut(s) 58, 178, 949
Cfr10I RCCGGY 3 cut(s) 52, 895, 1090
Cfr13I GGNCC 5 cut(s) 181, 238, 591, 1433, 1661
CseI GACGC 3 cut(s) 516, 1094, 1349
Csp6I GTAC 5 cut(s) 157, 274, 630, 1071, 1793
CviAII CATG 5 cut(s) 1114, 1478, 1785, 1790, 1842
CviQI GTAC 5 cut(s) 157, 274, 630, 1071, 1793
DdeI CTNAG 3 cut(s) 767, 900, 1566
DinI GGCGCC 2 cut(s) 57, 948
DriI GACNNNNNGTC 1 cut(s) 244
EaeI YGGCCR 2 cut(s) 1092, 1322
Eam1104I CTCTTC 4 cut(s) 432, 680, 1616, 1668
Eam1105I GACNNNNNGTC 1 cut(s) 244
EarI CTCTTC 4 cut(s) 432, 680, 1616, 1668
EciI GGCGGA 3 cut(s) 515, 867, 873
Ecl136II GAGCTC 2 cut(s) 232, 1276
Eco130I CCWWGG 1 cut(s) 782
Eco147I AGGCCT 1 cut(s) 842
Eco24I GRGCYC 2 cut(s) 234, 1278
Eco31I GGTCTC 1 cut(s) 799
Eco47I GGWCC 4 cut(s) 181, 238, 591, 1433
Eco53kI GAGCTC 2 cut(s) 232, 1276
Eco57I CTGAAG 3 cut(s) 84, 275, 305
EcoICRI GAGCTC 2 cut(s) 232, 1276
EcoRII CCWGG 4 cut(s) 495, 648, 722, 1758
EcoT14I CCWWGG 1 cut(s) 782
EcoT38I GRGCYC 2 cut(s) 234, 1278
EgeI GGCGCC 2 cut(s) 57, 948
EheI GGCGCC 2 cut(s) 57, 948
ErhI CCWWGG 1 cut(s) 782
FaeI CATG 5 cut(s) 1117, 1481, 1788, 1793, 1845
FaiI YATR 8 cut(s) 1115, 1190, 1479, 1617, 1619, 1786, 1791, 1843
FaqI GGGAC 2 cut(s) 251, 582
FatI CATG 5 cut(s) 1113, 1477, 1784, 1789, 1841
FauI CCCGC 1 cut(s) 173
FbaI TGATCA 2 cut(s) 600, 1200
FblI GTMKAC 1 cut(s) 761
FokI GGATG 7 cut(s) 808, 1178, 1280, 1304, 1513, 1567, 1579
FriOI GRGCYC 2 cut(s) 234, 1278
FspBI CTAG 3 cut(s) 60, 221, 783
GlaI GCGC 3 cut(s) 57, 177, 948
GsaI CCCAGC 1 cut(s) 12
GsuI CTGGAG 3 cut(s) 290, 671, 706
HaeII RGCGCY 2 cut(s) 59, 950
HaeIII GGCC 4 cut(s) 842, 1094, 1324, 1662
HgaI GACGC 3 cut(s) 516, 1094, 1349
HhaI GCGC 3 cut(s) 58, 178, 949
Hin1I GRCGYC 3 cut(s) 56, 527, 947
Hin1II CATG 5 cut(s) 1117, 1481, 1788, 1793, 1845
Hin6I GCGC 3 cut(s) 56, 176, 947
HinP1I GCGC 3 cut(s) 56, 176, 947
HindIII AAGCTT 1 cut(s) 1382
HphI GGTGA 4 cut(s) 28, 842, 1000, 1012
Hpy166II GTNNAC 5 cut(s) 157, 762, 1227, 1486, 1836
Hpy188III TCNNGA 8 cut(s) 269, 604, 774, 939, 1129, 1213, 1378, 1537
Hpy8I GTNNAC 5 cut(s) 157, 762, 1227, 1486, 1836
HpyCH4III ACNGT 5 cut(s) 810, 830, 936, 988, 1797
HpyCH4IV ACGT 1 cut(s) 201
HpyCH4V TGCA 8 cut(s) 644, 729, 1220, 1358, 1453, 1714, 1739, 1830
HpyF3I CTNAG 3 cut(s) 767, 900, 1566
HpySE526I ACGT 1 cut(s) 201
Hsp92I GRCGYC 3 cut(s) 56, 527, 947
Hsp92II CATG 5 cut(s) 1117, 1481, 1788, 1793, 1845
HspAI GCGC 3 cut(s) 56, 176, 947
KasI GGCGCC 2 cut(s) 55, 946
KpnI GGTACC 1 cut(s) 1074
KroI GCCGGC 1 cut(s) 52
KroNI GCCGGC 1 cut(s) 54
Ksp22I TGATCA 2 cut(s) 600, 1200
LguI GCTCTTC 1 cut(s) 1668
Lsp1109I GCAGC 4 cut(s) 198, 267, 1232, 1342
LweI GCATC 6 cut(s) 1032, 1440, 1545, 1601, 1723, 1726
MaeI CTAG 3 cut(s) 60, 221, 783
MaeII ACGT 1 cut(s) 201
MaeIII GTNAC 5 cut(s) 33, 202, 936, 988, 1109
MbiI CCGCTC 2 cut(s) 168, 1137
MflI RGATCY 2 cut(s) 324, 770
MhlI GDGCHC 2 cut(s) 234, 1278
MluCI AATT 4 cut(s) 1469, 1549, 1601, 1820
Mly113I GGCGCC 2 cut(s) 56, 947
MlyI GAGTC 5 cut(s) 254, 299, 748, 1058, 1635
MmeI TCCRAC 6 cut(s) 241, 411, 510, 849, 1107, 1460
MreI CGCCGGCG 1 cut(s) 52
MroNI GCCGGC 1 cut(s) 52
MseI TTAA 4 cut(s) 330, 1236, 1308, 1443
MspCI CTTAAG 2 cut(s) 1307, 1442
MspR9I CCNGG 6 cut(s) 236, 242, 497, 650, 724, 1760
Mva1269I GAATGC 2 cut(s) 1222, 1358
MvaI CCWGG 4 cut(s) 497, 650, 724, 1760
MvnI CGCG 3 cut(s) 176, 892, 1514
NaeI GCCGGC 1 cut(s) 54
NarI GGCGCC 2 cut(s) 56, 947
NciI CCSGG 2 cut(s) 236, 242
NgoMIV GCCGGC 1 cut(s) 52
NlaIII CATG 5 cut(s) 1117, 1481, 1788, 1793, 1845
NlaIV GGNNCC 6 cut(s) 57, 239, 789, 915, 948, 1072
NmeAIII GCCGAG 3 cut(s) 738, 772, 828
NmuCI GTSAC 4 cut(s) 202, 936, 988, 1109
NspV TTCGAA 1 cut(s) 683
PceI AGGCCT 1 cut(s) 842
PciSI GCTCTTC 1 cut(s) 1668
PcsI WCGNNNNNNNCGW 2 cut(s) 1125, 1368
PctI GAATGC 2 cut(s) 1222, 1358
PdiI GCCGGC 1 cut(s) 54
PfeI GAWTC 6 cut(s) 655, 680, 777, 1052, 1508, 1540
PflFI GACNNNGTC 1 cut(s) 757
PfoI TCCNGGA 1 cut(s) 234
Ple19I CGATCG 1 cut(s) 944
PleI GAGTC 5 cut(s) 253, 298, 748, 1058, 1634
PluTI GGCGCC 2 cut(s) 59, 950
PpsI GAGTC 5 cut(s) 253, 298, 748, 1058, 1634
PshAI GACNNNNGTC 1 cut(s) 811
Psp124BI GAGCTC 2 cut(s) 234, 1278
Psp6I CCWGG 4 cut(s) 495, 648, 722, 1758
PspFI CCCAGC 1 cut(s) 8
PspGI CCWGG 4 cut(s) 495, 648, 722, 1758
PspN4I GGNNCC 6 cut(s) 57, 239, 789, 915, 948, 1072
PspPI GGNCC 5 cut(s) 181, 238, 591, 1433, 1661
PstNI CAGNNNCTG 1 cut(s) 571
PsuI RGATCY 2 cut(s) 324, 770
PsyI GACNNNGTC 1 cut(s) 757
PvuI CGATCG 1 cut(s) 944
RsaI GTAC 5 cut(s) 158, 275, 631, 1072, 1794
RsaNI GTAC 5 cut(s) 157, 274, 630, 1071, 1793
SacI GAGCTC 2 cut(s) 234, 1278
SapI GCTCTTC 1 cut(s) 1668
SaqAI TTAA 4 cut(s) 330, 1236, 1308, 1443
Sau96I GGNCC 5 cut(s) 181, 238, 591, 1433, 1661
SchI GAGTC 5 cut(s) 254, 299, 748, 1058, 1635
ScrFI CCNGG 6 cut(s) 236, 242, 497, 650, 724, 1760
SduI GDGCHC 2 cut(s) 234, 1278
SfaNI GCATC 6 cut(s) 1032, 1440, 1545, 1601, 1723, 1726
SfoI GGCGCC 2 cut(s) 57, 948
SfuI TTCGAA 1 cut(s) 683
SgrAI CRCCGGYG 1 cut(s) 52
SinI GGWCC 4 cut(s) 181, 238, 591, 1433
SmlI CTYRAG 4 cut(s) 377, 1307, 1376, 1442
SmoI CTYRAG 4 cut(s) 377, 1307, 1376, 1442
SpeI ACTAGT 1 cut(s) 220
Sse9I AATT 4 cut(s) 1469, 1549, 1601, 1820
SseBI AGGCCT 1 cut(s) 842
SspDI GGCGCC 2 cut(s) 55, 946
SspMI CTAG 3 cut(s) 60, 221, 783
SstI GAGCTC 2 cut(s) 234, 1278
StuI AGGCCT 1 cut(s) 842
StyD4I CCNGG 6 cut(s) 234, 240, 495, 648, 722, 1758
StyI CCWWGG 1 cut(s) 782
TaaI ACNGT 5 cut(s) 810, 830, 936, 988, 1797
TaiI ACGT 1 cut(s) 204
TaqI TCGA 8 cut(s) 248, 683, 775, 1128, 1212, 1496, 1696, 1734
TaqII GACCGA 1 cut(s) 283
TasI AATT 4 cut(s) 1469, 1549, 1601, 1820
TatI WGTACW 3 cut(s) 156, 273, 1792
TfiI GAWTC 6 cut(s) 655, 680, 777, 1052, 1508, 1540
Tru1I TTAA 4 cut(s) 330, 1236, 1308, 1443
Tru9I TTAA 4 cut(s) 330, 1236, 1308, 1443
TscAI CASTG 3 cut(s) 108, 646, 1802
TseFI GTSAC 4 cut(s) 202, 936, 988, 1109
TseI GCWGC 4 cut(s) 211, 280, 1220, 1355
Tsp45I GTSAC 4 cut(s) 202, 936, 988, 1109
TspDTI ATGAA 5 cut(s) 530, 1177, 1308, 1625, 1634
TspGWI ACGGA 8 cut(s) 221, 275, 574, 647, 1007, 1178, 1585, 1697
TspRI CASTG 3 cut(s) 108, 646, 1802
Tth111I GACNNNGTC 1 cut(s) 757
Vha464I CTTAAG 2 cut(s) 1307, 1442
VpaK11BI GGWCC 4 cut(s) 181, 238, 591, 1433
XapI RAATTY 1 cut(s) 1820
XmaJI CCTAGG 1 cut(s) 782
XmiI GTMKAC 1 cut(s) 761
XspI CTAG 3 cut(s) 60, 221, 783
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.