RLG00000031736

Protein CHUP1, chloroplastic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0012111
Physical Location & Seq
Forward (+)
7891023 .. 7894530
3508 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031736

Sequence Viewer

Length: 1917 bp
ATGGTAGCTGGGAAGGTGAGGGTAGCAATGGGGTTACAGAAATCCCCATCGCCGGCGCGTAGTAGTAAGCCAGAGCCGCCTCCGAAGCCGCCGTCGCCGTCAGTGAGTTCCGGCAAGTCGTCGCAGAAGGCGGTGTTCTCACGCTCCTTCGGCGTGTACTTCCCACGCTCCTCTGCGCAGGTCCAGCCGAAGCCGCCGGACGTGACGGAGCTGCTCCGACTAGTGGAGGAGCTCCGGGACCGGGAGTCGAGGCTGAAGACGGAGCTTCTGGAGTACAAGCTGCTGAAGGAGTCGGCCGCCATTGTTCCAGTGCTGGAAAACGAGATCTTTAACAAGGACGAGGAGATTGGGAGAGCCAACAGAAAAATTGAAGTGCTTGAAAACGAGAACAGGAGGTTGAGGAGTGAAGCCGAGTTGGTTAGAGTGGAGTTGGTGGAAGAGAGGAGGGAGAGCGAGAAGAAAGTGGAGGAAATGGAGGCGAAAATCAAAGCTATCCAGGCGGAGATTTCGGAGATGAAGAAAACGGCGTCGGAAAGCGACGAGCTTTCGTCGTCGCAGAGATTTCAGGGACTGATGGAGGTGTCTGTTAGGTCCAATCTGATCAAGAACTTGAAGAAGGGAGTGAAATGTACGGACATCAGTGCAAGCCTGGAGAATCAGCAAAGACTGGAACGCTCGGATTCGAAGAGAGAGGAAGTTGAGATTGAAATGCCGAGACACTCCAGGTGTAACTCGGAGGATTTCGCCGAGTCGACTCTGTCTACTCTCAGATCTCGAATCCCTAGGGTTCCGAAACCGCCGCCGAGACCGTCGTCGTCGCCGTCGTCATCCAACGGTGAAAACAAGGCCTCTACAACAGGAGAGCAAGCCAACATTCCACCTCCGCCGCCTCTACCGACTCAGGCGAAGGTGGCACCTCCACCGCCACCTCCGCCGTCACGATCGGCTCCACCTCCGCCACCGCCGCCGCCGAAGGGTAGGAAGACGGTGACGGAGAAGGTGAGGCGAGTGCCGGAGGTTGTGGAGTTTTACCACTCTCTGATGCGGAGGGATTCTCGGAGAGACTCCGGTACCGGAGCTTCCGACGCACCGGCCACCGCCAATGCCCGTGACATGATCGGAGAGATCGAGAACCGCTCTGCTCACTTGCTCGCTATCAAAACGGATGTAGAAACGCAGGGAGATTTCATAAGGTTTTTGATCAAAGAAGTCGAGAATGCAGCGTTTACAGACATTAACGATGTGGTGCCTTTTGTCAAATGGCTGGATGATGAGCTCTCTTATTTGGTGGATGAAAGAGCTGTGCTTAAGCATTTTGACTGGCCGGAGCAGAAGGCTGATGCTCTGCGTGAGGCTGCATTCGGGTATTGCGATCTCAAGAAGCTTGAAACAGAGGCTTCTTCGTTCCCTGACCATTCCCGCCAGCCCTGCGGTCCAACCCTTAAGAAGATGCAGGCTTTGCTTGAAAAATTGGAGCATGGTGTTTACAACCTTTCGAGGATGAGAGAATCCGCCACGAAAAGATACAAAGTTTTTCAGATTCCTACAAATTGGATGCTGGATACTGAGTTTGTAAGCCAGATCAAGCTGGCATCCGTAAAATTGGCAATGAAGTATATGAAGAGAGTCTCTGCGGAGCTTGAAATAGTAGGTGGTGGTGGCCCAGAAGAAGAAGAGCTGATAGTTCAAGGCGTTCGATTTGCCTTCCGTGTGCATCAGTTTGCTGGTGGTTTCGATGCAGAAACGATGAGAGCGTTCCAGCACTCTCAGCTTCAGAAATTGCTCCGAGTTTTTGTTGTAAAGATAGAACATCCTGTTTGTGAATACAATGGCAGCTGCCATAATAAATATGATTCATCGGCTCACCCCCTACTCGGAAATGTTCCTCATCGCACCATTTCATTACAGAACTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

639

Amino Acids

71.74

Weight (kDa)

8.72

Isoelectric Point (pI)

65.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18570 AT4G18570
fragaria_vesca FvH4_3g08000
malus_domestica MD05G1303500.v1.1 MD10G1282700.v1.1
prunus_persica Prupe.4G059200_v2.0.a1
pyrus_communis pycom05g28050 pycom10g23580
rosa_chinensis RchiOBHm_Chr5g0010311
rosa_laevigata RLG00000031736
rosa_multiflora Rmu_co8025906.1_g000001 Rmu_sc0012578.1_g000002
rosa_roxburghii Rroxscaffold_1G00065940
rosa_rugosa Rorug04G0450100
rosa_samantha Rh5AG081200 Rh5BG076100 Rh5CG089400 Rh5DG076800
rosa_wichuraiana Rw5G007520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 177
Acc36I ACCTGC 1 cut(s) 169
Acc65I GGTACC 1 cut(s) 1070
AccB1I GGYRCC 3 cut(s) 913, 1070, 1246
AccBSI CCGCTC 1 cut(s) 1137
AccI GTMKAC 2 cut(s) 752, 761
AccII CGCG 1 cut(s) 58
AcoI YGGCCR 3 cut(s) 294, 1092, 1322
AcuI CTGAAG 3 cut(s) 275, 305, 1757
AcyI GRCGYC 1 cut(s) 527
AfaI GTAC 4 cut(s) 158, 275, 631, 1072
AfiI CCNNNNNNNGG 5 cut(s) 52, 223, 241, 974, 1874
AflII CTTAAG 2 cut(s) 1307, 1442
AgsI TTSAA 8 cut(s) 371, 380, 613, 707, 1388, 1466, 1643, 1688
AhdI GACNNNNNGTC 1 cut(s) 244
AhlI ACTAGT 1 cut(s) 220
AjiI CACGTC 1 cut(s) 202
AjnI CCWGG 3 cut(s) 495, 648, 722
Alw21I GWGCWC 2 cut(s) 234, 1278
Alw26I GTCTC 4 cut(s) 709, 799, 1056, 1633
AlwNI CAGNNNCTG 1 cut(s) 571
AoxI GGCC 5 cut(s) 294, 846, 1092, 1322, 1660
ApeKI GCWGC 6 cut(s) 211, 280, 1220, 1355, 1833, 1836
ArsI GACNNNNNNTTYG 2 cut(s) 77, 109
Asp718I GGTACC 1 cut(s) 1070
AspA2I CCTAGG 1 cut(s) 782
AspLEI GCGC 2 cut(s) 58, 178
AspS9I GGNCC 5 cut(s) 181, 238, 591, 1433, 1661
AsuC2I CCSGG 2 cut(s) 236, 242
AsuHPI GGTGA 5 cut(s) 28, 848, 1000, 1012, 1856
AsuII TTCGAA 1 cut(s) 683
AvaII GGWCC 4 cut(s) 181, 238, 591, 1433
AvrII CCTAGG 1 cut(s) 782
BaeI ACNNNNGTAYC 2 cut(s) 1054, 1087
BanI GGYRCC 3 cut(s) 913, 1070, 1246
BanII GRGCYC 2 cut(s) 234, 1278
BarI GAAGNNNNNNTAC 2 cut(s) 1063, 1095
BbsI GAAGAC 2 cut(s) 263, 989
Bbv12I GWGCWC 2 cut(s) 234, 1278
BbvI GCAGC 6 cut(s) 198, 267, 1232, 1342, 1823, 1845
BccI CCATC 2 cut(s) 55, 568
BceAI ACGGC 5 cut(s) 76, 82, 540, 805, 919
BciT130I CCWGG 3 cut(s) 497, 650, 724
BciVI GTATCC 1 cut(s) 1555
BclI TGATCA 2 cut(s) 600, 1200
BcnI CCSGG 2 cut(s) 236, 242
BcoDI GTCTC 4 cut(s) 709, 799, 1056, 1633
BcuI ACTAGT 1 cut(s) 220
BfaI CTAG 2 cut(s) 221, 783
BfrI CTTAAG 2 cut(s) 1307, 1442
BfuAI ACCTGC 1 cut(s) 169
BfuI GTATCC 1 cut(s) 1555
BglII AGATCT 2 cut(s) 324, 770
BlnI CCTAGG 1 cut(s) 782
Bme1390I CCNGG 5 cut(s) 236, 242, 497, 650, 724
Bme18I GGWCC 4 cut(s) 181, 238, 591, 1433
BmeRI GACNNNNNGTC 1 cut(s) 244
BmgBI CACGTC 1 cut(s) 202
BmgT120I GGNCC 5 cut(s) 181, 238, 591, 1433, 1661
BmiI GGNNCC 6 cut(s) 239, 789, 915, 948, 1072, 1248
BmrFI CCNGG 5 cut(s) 236, 242, 497, 650, 724
BmsI GCATC 7 cut(s) 1032, 1330, 1440, 1545, 1601, 1723, 1726
BoxI GACNNNNGTC 1 cut(s) 811
BpiI GAAGAC 2 cut(s) 263, 989
BplI GAGNNNNNCTC 4 cut(s) 1039, 1071, 1121, 1153
BpmI CTGGAG 3 cut(s) 290, 671, 706
Bpu14I TTCGAA 1 cut(s) 683
BpuEI CTTGAG 1 cut(s) 1361
BpuMI CCSGG 2 cut(s) 236, 242
BsaHI GRCGYC 1 cut(s) 527
BsaI GGTCTC 1 cut(s) 799
BsaJI CCNNGG 1 cut(s) 782
BsaWI WCCGGW 2 cut(s) 1067, 1073
Bsc4I CCNNNNNNNGG 5 cut(s) 52, 223, 241, 974, 1874
Bse118I RCCGGY 2 cut(s) 52, 1090
Bse1I ACTGG 3 cut(s) 308, 672, 1325
Bse3DI GCAATG 2 cut(s) 33, 1614
BseBI CCWGG 3 cut(s) 497, 650, 724
BseDI CCNNGG 1 cut(s) 782
BseGI GGATG 8 cut(s) 827, 1171, 1273, 1297, 1506, 1560, 1592, 1810
BseLI CCNNNNNNNGG 5 cut(s) 52, 223, 241, 974, 1874
BseMI GCAATG 2 cut(s) 33, 1614
BseMII CTCAG 4 cut(s) 781, 914, 1557, 1781
BseNI ACTGG 3 cut(s) 308, 672, 1325
BseRI GAGGAG 5 cut(s) 160, 242, 356, 415, 457
BseX3I CGGCCG 1 cut(s) 294
BseXI GCAGC 6 cut(s) 198, 267, 1232, 1342, 1823, 1845
BseYI CCCAGC 1 cut(s) 8
Bsh1236I CGCG 1 cut(s) 58
Bsh1285I CGRYCG 2 cut(s) 297, 944
BshFI GGCC 5 cut(s) 296, 848, 1094, 1324, 1662
BshNI GGYRCC 3 cut(s) 913, 1070, 1246
BsiEI CGRYCG 2 cut(s) 297, 944
BsiHKAI GWGCWC 2 cut(s) 234, 1278
BslFI GGGAC 2 cut(s) 251, 582
BslI CCNNNNNNNGG 5 cut(s) 52, 223, 241, 974, 1874
BsmAI GTCTC 4 cut(s) 709, 799, 1056, 1633
BsmFI GGGAC 2 cut(s) 251, 582
BsmI GAATGC 2 cut(s) 1222, 1358
BsnI GGCC 5 cut(s) 296, 848, 1094, 1324, 1662
Bso31I GGTCTC 1 cut(s) 799
Bsp119I TTCGAA 1 cut(s) 683
Bsp1286I GDGCHC 2 cut(s) 234, 1278
Bsp143I GATC 9 cut(s) 324, 600, 770, 941, 1116, 1125, 1200, 1372, 1581
BspANI GGCC 5 cut(s) 296, 848, 1094, 1324, 1662
BspCNI CTCAG 4 cut(s) 780, 913, 1558, 1780
BspFNI CGCG 1 cut(s) 58
BspLI GGNNCC 6 cut(s) 239, 789, 915, 948, 1072, 1248
BspMI ACCTGC 1 cut(s) 169
BspQI GCTCTTC 1 cut(s) 1668
BspT104I TTCGAA 1 cut(s) 683
BspT107I GGYRCC 3 cut(s) 913, 1070, 1246
BspTI CTTAAG 2 cut(s) 1307, 1442
BspTNI GGTCTC 1 cut(s) 799
BsrBI CCGCTC 1 cut(s) 1137
BsrDI GCAATG 2 cut(s) 33, 1614
BsrFI RCCGGY 2 cut(s) 52, 1090
BsrI ACTGG 3 cut(s) 308, 672, 1325
BssAI RCCGGY 2 cut(s) 52, 1090
BssECI CCNNGG 1 cut(s) 782
BssMI GATC 9 cut(s) 324, 600, 770, 941, 1116, 1125, 1200, 1372, 1581
BssNI GRCGYC 1 cut(s) 527
BssT1I CCWWGG 1 cut(s) 782
Bst2UI CCWGG 3 cut(s) 497, 650, 724
Bst4CI ACNGT 3 cut(s) 810, 836, 988
Bst6I CTCTTC 4 cut(s) 432, 680, 1616, 1668
BstACI GRCGYC 1 cut(s) 527
BstAFI CTTAAG 2 cut(s) 1307, 1442
BstAPI GCANNNNNTGC 1 cut(s) 1459
BstBI TTCGAA 1 cut(s) 683
BstC8I GCNNGC 7 cut(s) 54, 646, 867, 1152, 1424, 1455, 1590
BstDEI CTNAG 4 cut(s) 767, 900, 1566, 1767
BstF5I GGATG 8 cut(s) 827, 1171, 1273, 1297, 1506, 1560, 1592, 1810
BstFNI CGCG 1 cut(s) 58
BstHHI GCGC 2 cut(s) 58, 178
BstKTI GATC 9 cut(s) 327, 603, 773, 944, 1119, 1128, 1203, 1375, 1584
BstMAI GTCTC 4 cut(s) 709, 799, 1056, 1633
BstMBI GATC 9 cut(s) 324, 600, 770, 941, 1116, 1125, 1200, 1372, 1581
BstMCI CGRYCG 2 cut(s) 297, 944
BstNI CCWGG 3 cut(s) 497, 650, 724
BstPAI GACNNNNGTC 1 cut(s) 811
BstSCI CCNGG 5 cut(s) 234, 240, 495, 648, 722
BstUI CGCG 1 cut(s) 58
BstV1I GCAGC 6 cut(s) 198, 267, 1232, 1342, 1823, 1845
BstV2I GAAGAC 2 cut(s) 263, 989
BstX2I RGATCY 2 cut(s) 324, 770
BstYI RGATCY 2 cut(s) 324, 770
BstZI CGGCCG 1 cut(s) 294
BsuI GTATCC 1 cut(s) 1555
BsuRI GGCC 5 cut(s) 296, 848, 1094, 1324, 1662
BtgZI GCGATG 2 cut(s) 33, 1874
BtrI CACGTC 1 cut(s) 202
BtsCI GGATG 8 cut(s) 827, 1171, 1273, 1297, 1506, 1560, 1592, 1810
BtsIMutI CAGTG 3 cut(s) 108, 315, 646
BveI ACCTGC 1 cut(s) 169
Cac8I GCNNGC 7 cut(s) 54, 646, 867, 1152, 1424, 1455, 1590
CaiI CAGNNNCTG 1 cut(s) 571
CfoI GCGC 2 cut(s) 58, 178
Cfr10I RCCGGY 2 cut(s) 52, 1090
Cfr13I GGNCC 5 cut(s) 181, 238, 591, 1433, 1661
CseI GACGC 2 cut(s) 516, 1094
Csp6I GTAC 4 cut(s) 157, 274, 630, 1071
CviAII CATG 2 cut(s) 1114, 1478
CviQI GTAC 4 cut(s) 157, 274, 630, 1071
DdeI CTNAG 4 cut(s) 767, 900, 1566, 1767
DpnI GATC 9 cut(s) 326, 602, 772, 943, 1118, 1127, 1202, 1374, 1583
DpnII GATC 9 cut(s) 324, 600, 770, 941, 1116, 1125, 1200, 1372, 1581
DriI GACNNNNNGTC 1 cut(s) 244
EaeI YGGCCR 3 cut(s) 294, 1092, 1322
EagI CGGCCG 1 cut(s) 294
Eam1104I CTCTTC 4 cut(s) 432, 680, 1616, 1668
Eam1105I GACNNNNNGTC 1 cut(s) 244
EarI CTCTTC 4 cut(s) 432, 680, 1616, 1668
EciI GGCGGA 5 cut(s) 515, 873, 921, 945, 1501
Ecl136II GAGCTC 2 cut(s) 232, 1276
EclXI CGGCCG 1 cut(s) 294
Eco130I CCWWGG 1 cut(s) 782
Eco147I AGGCCT 1 cut(s) 848
Eco24I GRGCYC 2 cut(s) 234, 1278
Eco31I GGTCTC 1 cut(s) 799
Eco47I GGWCC 4 cut(s) 181, 238, 591, 1433
Eco52I CGGCCG 1 cut(s) 294
Eco53kI GAGCTC 2 cut(s) 232, 1276
Eco57I CTGAAG 3 cut(s) 275, 305, 1757
EcoICRI GAGCTC 2 cut(s) 232, 1276
EcoRII CCWGG 3 cut(s) 495, 648, 722
EcoT14I CCWWGG 1 cut(s) 782
EcoT38I GRGCYC 2 cut(s) 234, 1278
ErhI CCWWGG 1 cut(s) 782
FaeI CATG 2 cut(s) 1117, 1481
FaiI YATR 7 cut(s) 1115, 1190, 1479, 1617, 1619, 1842, 1851
FaqI GGGAC 2 cut(s) 251, 582
FatI CATG 2 cut(s) 1113, 1477
FauI CCCGC 1 cut(s) 1427
FbaI TGATCA 2 cut(s) 600, 1200
FblI GTMKAC 2 cut(s) 752, 761
FokI GGATG 8 cut(s) 814, 1178, 1280, 1304, 1513, 1567, 1579, 1797
FriOI GRGCYC 2 cut(s) 234, 1278
FspBI CTAG 2 cut(s) 221, 783
FspI TGCGCA 1 cut(s) 177
GlaI GCGC 2 cut(s) 57, 177
GsaI CCCAGC 1 cut(s) 12
GsuI CTGGAG 3 cut(s) 290, 671, 706
HaeIII GGCC 5 cut(s) 296, 848, 1094, 1324, 1662
HgaI GACGC 2 cut(s) 516, 1094
HhaI GCGC 2 cut(s) 58, 178
Hin1I GRCGYC 1 cut(s) 527
Hin1II CATG 2 cut(s) 1117, 1481
Hin6I GCGC 2 cut(s) 56, 176
HinP1I GCGC 2 cut(s) 56, 176
HincII GTYRAC 1 cut(s) 753
HindII GTYRAC 1 cut(s) 753
HindIII AAGCTT 1 cut(s) 1382
HphI GGTGA 5 cut(s) 28, 848, 1000, 1012, 1856
Hpy166II GTNNAC 5 cut(s) 157, 753, 762, 1227, 1486
Hpy188III TCNNGA 7 cut(s) 269, 604, 774, 939, 1129, 1213, 1378
Hpy8I GTNNAC 5 cut(s) 157, 753, 762, 1227, 1486
HpyCH4III ACNGT 3 cut(s) 810, 836, 988
HpyCH4IV ACGT 1 cut(s) 201
HpyCH4V TGCA 6 cut(s) 644, 1220, 1358, 1453, 1714, 1739
HpyF3I CTNAG 4 cut(s) 767, 900, 1566, 1767
HpySE526I ACGT 1 cut(s) 201
Hsp92I GRCGYC 1 cut(s) 527
Hsp92II CATG 2 cut(s) 1117, 1481
HspAI GCGC 2 cut(s) 56, 176
KpnI GGTACC 1 cut(s) 1074
KroI GCCGGC 1 cut(s) 52
KroNI GCCGGC 1 cut(s) 54
Ksp22I TGATCA 2 cut(s) 600, 1200
Kzo9I GATC 9 cut(s) 324, 600, 770, 941, 1116, 1125, 1200, 1372, 1581
LguI GCTCTTC 1 cut(s) 1668
Lsp1109I GCAGC 6 cut(s) 198, 267, 1232, 1342, 1823, 1845
LweI GCATC 7 cut(s) 1032, 1330, 1440, 1545, 1601, 1723, 1726
MaeI CTAG 2 cut(s) 221, 783
MaeII ACGT 1 cut(s) 201
MaeIII GTNAC 6 cut(s) 33, 202, 728, 936, 988, 1109
MalI GATC 9 cut(s) 326, 602, 772, 943, 1118, 1127, 1202, 1374, 1583
MbiI CCGCTC 1 cut(s) 1137
MboI GATC 9 cut(s) 324, 600, 770, 941, 1116, 1125, 1200, 1372, 1581
MflI RGATCY 2 cut(s) 324, 770
MhlI GDGCHC 2 cut(s) 234, 1278
MluCI AATT 5 cut(s) 366, 1469, 1549, 1601, 1778
MlyI GAGTC 7 cut(s) 254, 299, 748, 758, 892, 1058, 1635
MmeI TCCRAC 5 cut(s) 241, 510, 855, 1107, 1460
MreI CGCCGGCG 1 cut(s) 52
MroNI GCCGGC 1 cut(s) 52
MseI TTAA 4 cut(s) 330, 1236, 1308, 1443
MspA1I CMGCKG 1 cut(s) 1836
MspCI CTTAAG 2 cut(s) 1307, 1442
MspR9I CCNGG 5 cut(s) 236, 242, 497, 650, 724
Mva1269I GAATGC 2 cut(s) 1222, 1358
MvaI CCWGG 3 cut(s) 497, 650, 724
MvnI CGCG 1 cut(s) 58
NaeI GCCGGC 1 cut(s) 54
NciI CCSGG 2 cut(s) 236, 242
NdeII GATC 9 cut(s) 324, 600, 770, 941, 1116, 1125, 1200, 1372, 1581
NgoMIV GCCGGC 1 cut(s) 52
NlaIII CATG 2 cut(s) 1117, 1481
NlaIV GGNNCC 6 cut(s) 239, 789, 915, 948, 1072, 1248
NmeAIII GCCGAG 4 cut(s) 436, 738, 772, 828
NmuCI GTSAC 4 cut(s) 202, 936, 988, 1109
NsbI TGCGCA 1 cut(s) 177
NspV TTCGAA 1 cut(s) 683
PceI AGGCCT 1 cut(s) 848
PciSI GCTCTTC 1 cut(s) 1668
PcsI WCGNNNNNNNCGW 5 cut(s) 818, 821, 1125, 1368, 1751
PctI GAATGC 2 cut(s) 1222, 1358
PdiI GCCGGC 1 cut(s) 54
PfeI GAWTC 7 cut(s) 655, 680, 777, 1052, 1508, 1540, 1853
PflFI GACNNNGTC 1 cut(s) 757
PfoI TCCNGGA 1 cut(s) 234
Ple19I CGATCG 1 cut(s) 944
PleI GAGTC 7 cut(s) 253, 298, 748, 757, 892, 1058, 1634
PpsI GAGTC 7 cut(s) 253, 298, 748, 757, 892, 1058, 1634
PshAI GACNNNNGTC 1 cut(s) 811
Psp124BI GAGCTC 2 cut(s) 234, 1278
Psp6I CCWGG 3 cut(s) 495, 648, 722
PspFI CCCAGC 1 cut(s) 8
PspGI CCWGG 3 cut(s) 495, 648, 722
PspN4I GGNNCC 6 cut(s) 239, 789, 915, 948, 1072, 1248
PspPI GGNCC 5 cut(s) 181, 238, 591, 1433, 1661
PstNI CAGNNNCTG 1 cut(s) 571
PsuI RGATCY 2 cut(s) 324, 770
PsyI GACNNNGTC 1 cut(s) 757
PvuI CGATCG 1 cut(s) 944
PvuII CAGCTG 1 cut(s) 1836
RsaI GTAC 4 cut(s) 158, 275, 631, 1072
RsaNI GTAC 4 cut(s) 157, 274, 630, 1071
SacI GAGCTC 2 cut(s) 234, 1278
SalI GTCGAC 1 cut(s) 751
SapI GCTCTTC 1 cut(s) 1668
SaqAI TTAA 4 cut(s) 330, 1236, 1308, 1443
Sau3AI GATC 9 cut(s) 324, 600, 770, 941, 1116, 1125, 1200, 1372, 1581
Sau96I GGNCC 5 cut(s) 181, 238, 591, 1433, 1661
SchI GAGTC 7 cut(s) 254, 299, 748, 758, 892, 1058, 1635
ScrFI CCNGG 5 cut(s) 236, 242, 497, 650, 724
SduI GDGCHC 2 cut(s) 234, 1278
SfaNI GCATC 7 cut(s) 1032, 1330, 1440, 1545, 1601, 1723, 1726
SfuI TTCGAA 1 cut(s) 683
SgrAI CRCCGGYG 1 cut(s) 52
SinI GGWCC 4 cut(s) 181, 238, 591, 1433
SmlI CTYRAG 3 cut(s) 1307, 1376, 1442
SmoI CTYRAG 3 cut(s) 1307, 1376, 1442
SpeI ACTAGT 1 cut(s) 220
Sse9I AATT 5 cut(s) 366, 1469, 1549, 1601, 1778
SseBI AGGCCT 1 cut(s) 848
SspMI CTAG 2 cut(s) 221, 783
SstI GAGCTC 2 cut(s) 234, 1278
StuI AGGCCT 1 cut(s) 848
StyD4I CCNGG 5 cut(s) 234, 240, 495, 648, 722
StyI CCWWGG 1 cut(s) 782
TaaI ACNGT 3 cut(s) 810, 836, 988
TaiI ACGT 1 cut(s) 204
TaqI TCGA 9 cut(s) 248, 683, 752, 775, 1128, 1212, 1496, 1696, 1734
TasI AATT 5 cut(s) 366, 1469, 1549, 1601, 1778
TatI WGTACW 2 cut(s) 156, 273
TauI GCSGC 8 cut(s) 79, 91, 196, 299, 802, 889, 967, 970
TfiI GAWTC 7 cut(s) 655, 680, 777, 1052, 1508, 1540, 1853
Tru1I TTAA 4 cut(s) 330, 1236, 1308, 1443
Tru9I TTAA 4 cut(s) 330, 1236, 1308, 1443
TscAI CASTG 3 cut(s) 108, 315, 646
TseFI GTSAC 4 cut(s) 202, 936, 988, 1109
TseI GCWGC 6 cut(s) 211, 280, 1220, 1355, 1833, 1836
Tsp45I GTSAC 4 cut(s) 202, 936, 988, 1109
TspDTI ATGAA 7 cut(s) 530, 1177, 1308, 1625, 1634, 1845, 1890
TspGWI ACGGA 7 cut(s) 221, 275, 647, 1007, 1178, 1585, 1697
TspRI CASTG 3 cut(s) 108, 315, 646
Tth111I GACNNNGTC 1 cut(s) 757
Vha464I CTTAAG 2 cut(s) 1307, 1442
VpaK11BI GGWCC 4 cut(s) 181, 238, 591, 1433
XmaJI CCTAGG 1 cut(s) 782
XmiI GTMKAC 2 cut(s) 752, 761
XspI CTAG 2 cut(s) 221, 783
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.