Rh5BG076100

Protein CHUP1, chloroplastic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0012111
Physical Location & Seq
Forward (+)
6408938 .. 6413236
4299 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG076100.1

Sequence Viewer

Length: 1659 bp
ATGGTAGCTGGGAAGGTGAGGGTAGCAATGGGGTTACAGAAATCTCCATCGCCGGCGCGTAGTAGTAAGCCAGAGCCGCCTCCGAAGCCACCGTCGCCGTCAGTGAGCTCCGGCAAGTCGTCGCAGAAGGCGGTGTTCTCACGCTCCTTCGGCGTGTACTTTCCACGCTCCTCCGCTCAGGTCCAGCCGAAGCCGCCGGACGTGACGGAGCTGCTCCGACTAGTGGAGGAGCTCCGGGACCGGGAGTCGAGGCTGAAGACGGAGCTTCTGGAGTTCAAGCTGCTGAAGGAGTCGGTCGCCATTGTTCCGGTGCTGGAAAACGAGATCTTTAACAAGGACGAGGAGATTGGGAGAGCCAACAGAAAAATTGAAGTGCTTGAAAGCGAGAACAGGAGGTTGAGGAGTGAAGCGGAGTTGGTTAGGGTGGAGTTGGAGGAAGAGAGGAGGGAGAGCGAGAAGAAAGTGGAGGAAATGGAGGCGAAAATCAAAGCTATCCAAGTGGAGATTTCGGAGATGAAGAAAACGGCGTCGGAAAGCGACGAGCTTTCGTCGTCGCAGAGATTTCAGGGGCTGATGGAGGTGTCTGTTAGGTCCAATCTGATCAAGAACTTGAAGAAGGGAGTGAAATGTACGGACATCAGTGCAAGCCTGGAGAATCAGCAAAGACTGGAACGCTCGGATTCGAAGAGAGAGGAGGTTGAGATTGAAATGCCGAGACACTCCAGGTGTAACTCGGAGGATTTCGCCAAGTCGACTCTGTCTACTCTCAGATCTCGAATCCCTAGGGTTCCGAAACCGCCGCCGAGACCGTCGTCGTCGTCATCCAACGGTGAAAACAAGGCCTCTACAACAGGAGAGCAAGCCAACATTCCACCACCACCTCCGCCGCCGCTACCGGCTCAGGCGAAGGTGGCACCTCCACCGCCGCCTCCACCATCACGATCGGCGCCGCCTCCTCCACCGCCTCCGCCGAAGGGGAGGAAGACGGTGACGGAGAAGGTGAGGCGAGTGCCGGAGGTTGTGGAGTTTTACCACTCTCTGATGCGGAGGGATTCTCGGAGAGACTCCGGTACCGGAGCTTCCGACGCACCGGCCACCGCCAATGCCCGTGACATGATCGGAGAGATCGAGAACCGCTCTGCTCACTTGCTCGCTATCAAAACGGATGTAGAAACGCAGGGAGATTTCATAAGGTTTTTGATCAAAGAAGTCGAGAATGCAGCGTTTACAGACATCAAGGATGTGGTGCCTTTTGTCAAATGGCTGGATGATGAGCTCTCTTATTTGGTGGATGAAAGAGCTGTGCTTAAGCATTTTGACTGGCCGGAGCAGAAGGCTGATGCTCTGCGTGAGGCTGCATTCGGGTATTGCGATCTCAAGAAGCTTGAAACAGAGGCTTCTTCGTTCCCTGACCATTCCCGCCAGCCCTGCGGTCCAACCCTTAAGAAGATGCAGGCTTTGCTTGAAAAATTGGAGCATGGTGTTTACAACCTTTCGAGGATGAGAGAATCCGCGACGAAAAGATACAAAGTTTTCCAGATACCTACAAATTGGATGCTGGATACTGAGTTTGTAAGCCAGGTAATTCCTTGCCTCTGTCTGTGTTTATGCTTCAGAAACCGAATGGATGAAATTTTTACTCATATTTTCTTACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

552

Amino Acids

62.27

Weight (kDa)

8.7

Isoelectric Point (pI)

67.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18570 AT4G18570
fragaria_vesca FvH4_3g08000
malus_domestica MD05G1303500.v1.1 MD10G1282700.v1.1
prunus_persica Prupe.4G059200_v2.0.a1
pyrus_communis pycom05g28050 pycom10g23580
rosa_chinensis RchiOBHm_Chr5g0010311
rosa_laevigata RLG00000031736
rosa_multiflora Rmu_co8025906.1_g000001 Rmu_sc0012578.1_g000002
rosa_roxburghii Rroxscaffold_1G00065940
rosa_rugosa Rorug04G0450100
rosa_samantha Rh5AG081200 Rh5BG076100 Rh5CG089400 Rh5DG076800
rosa_wichuraiana Rw5G007520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1070
AccB1I GGYRCC 4 cut(s) 913, 946, 1070, 1246
AccBSI CCGCTC 2 cut(s) 176, 1137
AccI GTMKAC 2 cut(s) 752, 761
AccII CGCG 2 cut(s) 58, 1514
AcoI YGGCCR 2 cut(s) 1092, 1322
AcsI RAATTY 1 cut(s) 1632
AcuI CTGAAG 3 cut(s) 275, 305, 1597
AcyI GRCGYC 2 cut(s) 527, 947
AfaI GTAC 3 cut(s) 158, 631, 1072
AfiI CCNNNNNNNGG 3 cut(s) 223, 241, 974
AflII CTTAAG 2 cut(s) 1307, 1442
AgsI TTSAA 7 cut(s) 277, 371, 380, 613, 707, 1388, 1466
AhdI GACNNNNNGTC 1 cut(s) 244
AhlI ACTAGT 1 cut(s) 220
AjiI CACGTC 1 cut(s) 202
AjnI CCWGG 3 cut(s) 648, 722, 1578
Alw21I GWGCWC 3 cut(s) 110, 234, 1278
Alw26I GTCTC 3 cut(s) 709, 799, 1056
AlwNI CAGNNNCTG 1 cut(s) 571
AoxI GGCC 3 cut(s) 840, 1092, 1322
ApeKI GCWGC 4 cut(s) 211, 280, 1220, 1355
ApoI RAATTY 1 cut(s) 1632
ArsI GACNNNNNNTTYG 2 cut(s) 77, 109
Asp718I GGTACC 1 cut(s) 1070
AspA2I CCTAGG 1 cut(s) 782
AspLEI GCGC 2 cut(s) 58, 949
AspS9I GGNCC 4 cut(s) 181, 238, 591, 1433
AsuC2I CCSGG 2 cut(s) 236, 242
AsuHPI GGTGA 4 cut(s) 28, 842, 1000, 1012
AsuII TTCGAA 1 cut(s) 683
AvaII GGWCC 4 cut(s) 181, 238, 591, 1433
AvrII CCTAGG 1 cut(s) 782
BaeI ACNNNNGTAYC 2 cut(s) 1054, 1087
BanI GGYRCC 4 cut(s) 913, 946, 1070, 1246
BanII GRGCYC 3 cut(s) 110, 234, 1278
BarI GAAGNNNNNNTAC 2 cut(s) 1063, 1095
BbsI GAAGAC 2 cut(s) 263, 989
Bbv12I GWGCWC 3 cut(s) 110, 234, 1278
BbvI GCAGC 4 cut(s) 198, 267, 1232, 1342
BccI CCATC 3 cut(s) 55, 568, 943
BceAI ACGGC 2 cut(s) 82, 540
BciT130I CCWGG 3 cut(s) 650, 724, 1580
BciVI GTATCC 1 cut(s) 1555
BclI TGATCA 2 cut(s) 600, 1200
BcnI CCSGG 2 cut(s) 236, 242
BcoDI GTCTC 3 cut(s) 709, 799, 1056
BcuI ACTAGT 1 cut(s) 220
BfaI CTAG 2 cut(s) 221, 783
BfoI RGCGCY 1 cut(s) 950
BfrI CTTAAG 2 cut(s) 1307, 1442
BfuI GTATCC 1 cut(s) 1555
BglII AGATCT 2 cut(s) 324, 770
BlnI CCTAGG 1 cut(s) 782
Bme1390I CCNGG 5 cut(s) 236, 242, 650, 724, 1580
Bme18I GGWCC 4 cut(s) 181, 238, 591, 1433
BmeRI GACNNNNNGTC 1 cut(s) 244
BmgBI CACGTC 1 cut(s) 202
BmgT120I GGNCC 4 cut(s) 181, 238, 591, 1433
BmiI GGNNCC 6 cut(s) 239, 789, 915, 948, 1072, 1248
BmrFI CCNGG 5 cut(s) 236, 242, 650, 724, 1580
BmsI GCATC 4 cut(s) 1032, 1330, 1440, 1545
BoxI GACNNNNGTC 1 cut(s) 811
BpiI GAAGAC 2 cut(s) 263, 989
BplI GAGNNNNNCTC 4 cut(s) 1039, 1071, 1121, 1153
BpmI CTGGAG 3 cut(s) 290, 671, 706
Bpu10I CCTNAGC 2 cut(s) 177, 900
Bpu14I TTCGAA 1 cut(s) 683
BpuEI CTTGAG 1 cut(s) 1361
BpuMI CCSGG 2 cut(s) 236, 242
BsaHI GRCGYC 2 cut(s) 527, 947
BsaI GGTCTC 1 cut(s) 799
BsaJI CCNNGG 1 cut(s) 782
BsaWI WCCGGW 3 cut(s) 307, 1067, 1073
Bsc4I CCNNNNNNNGG 3 cut(s) 223, 241, 974
Bse118I RCCGGY 3 cut(s) 52, 895, 1090
Bse1I ACTGG 2 cut(s) 672, 1325
Bse3DI GCAATG 1 cut(s) 33
BseBI CCWGG 3 cut(s) 650, 724, 1580
BseDI CCNNGG 1 cut(s) 782
BseGI GGATG 8 cut(s) 821, 1171, 1246, 1273, 1297, 1506, 1560, 1633
BseLI CCNNNNNNNGG 3 cut(s) 223, 241, 974
BseMI GCAATG 1 cut(s) 33
BseMII CTCAG 4 cut(s) 191, 781, 914, 1557
BseNI ACTGG 2 cut(s) 672, 1325
BseRI GAGGAG 7 cut(s) 160, 242, 356, 415, 457, 707, 945
BseXI GCAGC 4 cut(s) 198, 267, 1232, 1342
BseYI CCCAGC 1 cut(s) 8
Bsh1236I CGCG 2 cut(s) 58, 1514
Bsh1285I CGRYCG 2 cut(s) 297, 944
BshFI GGCC 3 cut(s) 842, 1094, 1324
BshNI GGYRCC 4 cut(s) 913, 946, 1070, 1246
BsiEI CGRYCG 2 cut(s) 297, 944
BsiHKAI GWGCWC 3 cut(s) 110, 234, 1278
BslFI GGGAC 1 cut(s) 251
BslI CCNNNNNNNGG 3 cut(s) 223, 241, 974
BsmAI GTCTC 3 cut(s) 709, 799, 1056
BsmFI GGGAC 1 cut(s) 251
BsmI GAATGC 2 cut(s) 1222, 1358
BsnI GGCC 3 cut(s) 842, 1094, 1324
Bso31I GGTCTC 1 cut(s) 799
Bsp119I TTCGAA 1 cut(s) 683
Bsp1286I GDGCHC 3 cut(s) 110, 234, 1278
Bsp143I GATC 8 cut(s) 324, 600, 770, 941, 1116, 1125, 1200, 1372
BspANI GGCC 3 cut(s) 842, 1094, 1324
BspCNI CTCAG 4 cut(s) 190, 780, 913, 1558
BspFNI CGCG 2 cut(s) 58, 1514
BspLI GGNNCC 6 cut(s) 239, 789, 915, 948, 1072, 1248
BspT104I TTCGAA 1 cut(s) 683
BspT107I GGYRCC 4 cut(s) 913, 946, 1070, 1246
BspTI CTTAAG 2 cut(s) 1307, 1442
BspTNI GGTCTC 1 cut(s) 799
BsrBI CCGCTC 2 cut(s) 176, 1137
BsrDI GCAATG 1 cut(s) 33
BsrFI RCCGGY 3 cut(s) 52, 895, 1090
BsrI ACTGG 2 cut(s) 672, 1325
BssAI RCCGGY 3 cut(s) 52, 895, 1090
BssECI CCNNGG 1 cut(s) 782
BssMI GATC 8 cut(s) 324, 600, 770, 941, 1116, 1125, 1200, 1372
BssNI GRCGYC 2 cut(s) 527, 947
BssT1I CCWWGG 1 cut(s) 782
Bst2UI CCWGG 3 cut(s) 650, 724, 1580
Bst4CI ACNGT 4 cut(s) 93, 810, 830, 988
Bst6I CTCTTC 2 cut(s) 432, 680
BstACI GRCGYC 2 cut(s) 527, 947
BstAFI CTTAAG 2 cut(s) 1307, 1442
BstAPI GCANNNNNTGC 1 cut(s) 1459
BstBI TTCGAA 1 cut(s) 683
BstC8I GCNNGC 6 cut(s) 54, 646, 861, 1152, 1424, 1455
BstDEI CTNAG 5 cut(s) 177, 767, 900, 1566, 1656
BstF5I GGATG 8 cut(s) 821, 1171, 1246, 1273, 1297, 1506, 1560, 1633
BstFNI CGCG 2 cut(s) 58, 1514
BstH2I RGCGCY 1 cut(s) 950
BstHHI GCGC 2 cut(s) 58, 949
BstKTI GATC 8 cut(s) 327, 603, 773, 944, 1119, 1128, 1203, 1375
BstMAI GTCTC 3 cut(s) 709, 799, 1056
BstMBI GATC 8 cut(s) 324, 600, 770, 941, 1116, 1125, 1200, 1372
BstMCI CGRYCG 2 cut(s) 297, 944
BstMWI GCNNNNNNNGC 9 cut(s) 76, 85, 94, 150, 193, 911, 1085, 1428, 1459
BstNI CCWGG 3 cut(s) 650, 724, 1580
BstPAI GACNNNNGTC 1 cut(s) 811
BstSCI CCNGG 5 cut(s) 234, 240, 648, 722, 1578
BstUI CGCG 2 cut(s) 58, 1514
BstV1I GCAGC 4 cut(s) 198, 267, 1232, 1342
BstV2I GAAGAC 2 cut(s) 263, 989
BstX2I RGATCY 2 cut(s) 324, 770
BstYI RGATCY 2 cut(s) 324, 770
BsuI GTATCC 1 cut(s) 1555
BsuRI GGCC 3 cut(s) 842, 1094, 1324
BtgZI GCGATG 1 cut(s) 33
BtrI CACGTC 1 cut(s) 202
BtsCI GGATG 8 cut(s) 821, 1171, 1246, 1273, 1297, 1506, 1560, 1633
BtsIMutI CAGTG 2 cut(s) 108, 646
Cac8I GCNNGC 6 cut(s) 54, 646, 861, 1152, 1424, 1455
CaiI CAGNNNCTG 1 cut(s) 571
CfoI GCGC 2 cut(s) 58, 949
Cfr10I RCCGGY 3 cut(s) 52, 895, 1090
Cfr13I GGNCC 4 cut(s) 181, 238, 591, 1433
CseI GACGC 2 cut(s) 516, 1094
Csp6I GTAC 3 cut(s) 157, 630, 1071
CviAII CATG 2 cut(s) 1114, 1478
CviQI GTAC 3 cut(s) 157, 630, 1071
DdeI CTNAG 5 cut(s) 177, 767, 900, 1566, 1656
DinI GGCGCC 1 cut(s) 948
DpnI GATC 8 cut(s) 326, 602, 772, 943, 1118, 1127, 1202, 1374
DpnII GATC 8 cut(s) 324, 600, 770, 941, 1116, 1125, 1200, 1372
DriI GACNNNNNGTC 1 cut(s) 244
EaeI YGGCCR 2 cut(s) 1092, 1322
Eam1104I CTCTTC 2 cut(s) 432, 680
Eam1105I GACNNNNNGTC 1 cut(s) 244
EarI CTCTTC 2 cut(s) 432, 680
EciI GGCGGA 2 cut(s) 873, 957
Ecl136II GAGCTC 3 cut(s) 108, 232, 1276
Eco130I CCWWGG 1 cut(s) 782
Eco147I AGGCCT 1 cut(s) 842
Eco24I GRGCYC 3 cut(s) 110, 234, 1278
Eco31I GGTCTC 1 cut(s) 799
Eco47I GGWCC 4 cut(s) 181, 238, 591, 1433
Eco53kI GAGCTC 3 cut(s) 108, 232, 1276
Eco57I CTGAAG 3 cut(s) 275, 305, 1597
EcoICRI GAGCTC 3 cut(s) 108, 232, 1276
EcoRII CCWGG 3 cut(s) 648, 722, 1578
EcoT14I CCWWGG 1 cut(s) 782
EcoT38I GRGCYC 3 cut(s) 110, 234, 1278
EgeI GGCGCC 1 cut(s) 948
EheI GGCGCC 1 cut(s) 948
ErhI CCWWGG 1 cut(s) 782
FaeI CATG 2 cut(s) 1117, 1481
FaiI YATR 5 cut(s) 1115, 1190, 1479, 1609, 1644
FaqI GGGAC 1 cut(s) 251
FatI CATG 2 cut(s) 1113, 1477
FauI CCCGC 1 cut(s) 1427
FbaI TGATCA 2 cut(s) 600, 1200
FblI GTMKAC 2 cut(s) 752, 761
FokI GGATG 8 cut(s) 808, 1178, 1253, 1280, 1304, 1513, 1567, 1640
FriOI GRGCYC 3 cut(s) 110, 234, 1278
FspBI CTAG 2 cut(s) 221, 783
GlaI GCGC 2 cut(s) 57, 948
GsaI CCCAGC 1 cut(s) 12
GsuI CTGGAG 3 cut(s) 290, 671, 706
HaeII RGCGCY 1 cut(s) 950
HaeIII GGCC 3 cut(s) 842, 1094, 1324
HgaI GACGC 2 cut(s) 516, 1094
HhaI GCGC 2 cut(s) 58, 949
Hin1I GRCGYC 2 cut(s) 527, 947
Hin1II CATG 2 cut(s) 1117, 1481
Hin6I GCGC 2 cut(s) 56, 947
HinP1I GCGC 2 cut(s) 56, 947
HincII GTYRAC 1 cut(s) 753
HindII GTYRAC 1 cut(s) 753
HindIII AAGCTT 1 cut(s) 1382
HinfI GANTC 9 cut(s) 245, 290, 655, 680, 754, 777, 1052, 1064, 1508
HphI GGTGA 4 cut(s) 28, 842, 1000, 1012
Hpy166II GTNNAC 5 cut(s) 157, 753, 762, 1227, 1486
Hpy188III TCNNGA 8 cut(s) 269, 604, 774, 939, 1129, 1213, 1378, 1537
Hpy8I GTNNAC 5 cut(s) 157, 753, 762, 1227, 1486
HpyAV CCTTC 9 cut(s) 7, 121, 157, 280, 610, 901, 967, 991, 1327
HpyCH4III ACNGT 4 cut(s) 93, 810, 830, 988
HpyCH4IV ACGT 1 cut(s) 201
HpyCH4V TGCA 4 cut(s) 644, 1220, 1358, 1453
HpyF10VI GCNNNNNNNGC 9 cut(s) 76, 85, 94, 150, 193, 911, 1085, 1428, 1459
HpyF3I CTNAG 5 cut(s) 177, 767, 900, 1566, 1656
HpySE526I ACGT 1 cut(s) 201
Hsp92I GRCGYC 2 cut(s) 527, 947
Hsp92II CATG 2 cut(s) 1117, 1481
HspAI GCGC 2 cut(s) 56, 947
KasI GGCGCC 1 cut(s) 946
KpnI GGTACC 1 cut(s) 1074
KroI GCCGGC 1 cut(s) 52
KroNI GCCGGC 1 cut(s) 54
Ksp22I TGATCA 2 cut(s) 600, 1200
Kzo9I GATC 8 cut(s) 324, 600, 770, 941, 1116, 1125, 1200, 1372
Lsp1109I GCAGC 4 cut(s) 198, 267, 1232, 1342
LweI GCATC 4 cut(s) 1032, 1330, 1440, 1545
MaeI CTAG 2 cut(s) 221, 783
MaeII ACGT 1 cut(s) 201
MaeIII GTNAC 5 cut(s) 33, 202, 728, 988, 1109
MalI GATC 8 cut(s) 326, 602, 772, 943, 1118, 1127, 1202, 1374
MbiI CCGCTC 2 cut(s) 176, 1137
MboI GATC 8 cut(s) 324, 600, 770, 941, 1116, 1125, 1200, 1372
MboII GAAGA 9 cut(s) 268, 449, 469, 529, 625, 697, 994, 1392, 1459
MflI RGATCY 2 cut(s) 324, 770
MhlI GDGCHC 3 cut(s) 110, 234, 1278
MluCI AATT 5 cut(s) 366, 1469, 1549, 1584, 1632
Mly113I GGCGCC 1 cut(s) 947
MlyI GAGTC 4 cut(s) 254, 299, 748, 1058
MmeI TCCRAC 6 cut(s) 241, 411, 510, 849, 1107, 1460
MreI CGCCGGCG 1 cut(s) 52
MroNI GCCGGC 1 cut(s) 52
MseI TTAA 3 cut(s) 330, 1308, 1443
MspCI CTTAAG 2 cut(s) 1307, 1442
MspR9I CCNGG 5 cut(s) 236, 242, 650, 724, 1580
Mva1269I GAATGC 2 cut(s) 1222, 1358
MvaI CCWGG 3 cut(s) 650, 724, 1580
MvnI CGCG 2 cut(s) 58, 1514
MwoI GCNNNNNNNGC 9 cut(s) 76, 85, 94, 150, 193, 911, 1085, 1428, 1459
NaeI GCCGGC 1 cut(s) 54
NarI GGCGCC 1 cut(s) 947
NciI CCSGG 2 cut(s) 236, 242
NdeII GATC 8 cut(s) 324, 600, 770, 941, 1116, 1125, 1200, 1372
NgoMIV GCCGGC 1 cut(s) 52
NlaIII CATG 2 cut(s) 1117, 1481
NlaIV GGNNCC 6 cut(s) 239, 789, 915, 948, 1072, 1248
NmeAIII GCCGAG 2 cut(s) 738, 828
NmuCI GTSAC 3 cut(s) 202, 988, 1109
NspV TTCGAA 1 cut(s) 683
PceI AGGCCT 1 cut(s) 842
PcsI WCGNNNNNNNCGW 2 cut(s) 1125, 1368
PctI GAATGC 2 cut(s) 1222, 1358
PdiI GCCGGC 1 cut(s) 54
PfeI GAWTC 5 cut(s) 655, 680, 777, 1052, 1508
PflFI GACNNNGTC 1 cut(s) 757
PfoI TCCNGGA 1 cut(s) 234
Ple19I CGATCG 1 cut(s) 944
PleI GAGTC 4 cut(s) 253, 298, 748, 1058
PluTI GGCGCC 1 cut(s) 950
PpsI GAGTC 4 cut(s) 253, 298, 748, 1058
PshAI GACNNNNGTC 1 cut(s) 811
Psp124BI GAGCTC 3 cut(s) 110, 234, 1278
Psp6I CCWGG 3 cut(s) 648, 722, 1578
PspFI CCCAGC 1 cut(s) 8
PspGI CCWGG 3 cut(s) 648, 722, 1578
PspN4I GGNNCC 6 cut(s) 239, 789, 915, 948, 1072, 1248
PspPI GGNCC 4 cut(s) 181, 238, 591, 1433
PstNI CAGNNNCTG 1 cut(s) 571
PsuI RGATCY 2 cut(s) 324, 770
PsyI GACNNNGTC 1 cut(s) 757
PvuI CGATCG 1 cut(s) 944
RsaI GTAC 3 cut(s) 158, 631, 1072
RsaNI GTAC 3 cut(s) 157, 630, 1071
SacI GAGCTC 3 cut(s) 110, 234, 1278
SalI GTCGAC 1 cut(s) 751
SaqAI TTAA 3 cut(s) 330, 1308, 1443
Sau3AI GATC 8 cut(s) 324, 600, 770, 941, 1116, 1125, 1200, 1372
Sau96I GGNCC 4 cut(s) 181, 238, 591, 1433
SchI GAGTC 4 cut(s) 254, 299, 748, 1058
ScrFI CCNGG 5 cut(s) 236, 242, 650, 724, 1580
SduI GDGCHC 3 cut(s) 110, 234, 1278
SfaNI GCATC 4 cut(s) 1032, 1330, 1440, 1545
SfoI GGCGCC 1 cut(s) 948
SfuI TTCGAA 1 cut(s) 683
SgrAI CRCCGGYG 1 cut(s) 52
SinI GGWCC 4 cut(s) 181, 238, 591, 1433
SmlI CTYRAG 3 cut(s) 1307, 1376, 1442
SmoI CTYRAG 3 cut(s) 1307, 1376, 1442
SpeI ACTAGT 1 cut(s) 220
Sse9I AATT 5 cut(s) 366, 1469, 1549, 1584, 1632
SseBI AGGCCT 1 cut(s) 842
SspDI GGCGCC 1 cut(s) 946
SspMI CTAG 2 cut(s) 221, 783
SstI GAGCTC 3 cut(s) 110, 234, 1278
StuI AGGCCT 1 cut(s) 842
StyD4I CCNGG 5 cut(s) 234, 240, 648, 722, 1578
StyI CCWWGG 1 cut(s) 782
TaaI ACNGT 4 cut(s) 93, 810, 830, 988
TaiI ACGT 1 cut(s) 204
TaqI TCGA 7 cut(s) 248, 683, 752, 775, 1128, 1212, 1496
TaqII GACCGA 1 cut(s) 283
TasI AATT 5 cut(s) 366, 1469, 1549, 1584, 1632
TatI WGTACW 1 cut(s) 156
TauI GCSGC 7 cut(s) 79, 196, 802, 889, 892, 928, 952
TfiI GAWTC 5 cut(s) 655, 680, 777, 1052, 1508
Tru1I TTAA 3 cut(s) 330, 1308, 1443
Tru9I TTAA 3 cut(s) 330, 1308, 1443
TscAI CASTG 2 cut(s) 108, 646
TseFI GTSAC 3 cut(s) 202, 988, 1109
TseI GCWGC 4 cut(s) 211, 280, 1220, 1355
Tsp45I GTSAC 3 cut(s) 202, 988, 1109
TspDTI ATGAA 4 cut(s) 530, 1177, 1308, 1644
TspGWI ACGGA 5 cut(s) 221, 275, 647, 1007, 1178
TspRI CASTG 2 cut(s) 108, 646
Tth111I GACNNNGTC 1 cut(s) 757
Vha464I CTTAAG 2 cut(s) 1307, 1442
VpaK11BI GGWCC 4 cut(s) 181, 238, 591, 1433
XapI RAATTY 1 cut(s) 1632
XmaJI CCTAGG 1 cut(s) 782
XmiI GTMKAC 2 cut(s) 752, 761
XspI CTAG 2 cut(s) 221, 783
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.