Rmu_co8025906.1_g000001

Protein CHUP1, chloroplastic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8025906.1
OG0012111
Physical Location & Seq
Reverse (-)
2 .. 543
542 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8025906.1_g000001.1.cds

Sequence Viewer

Length: 292 bp
cctcctccaccgccgccgccgaaggggaggaagacggtgacggagaaggtgaggcgagtgccggaggttgtggagttttaccactctctgatgcggagggattctcggagagactccggtaccggagcttccgacgcaccggccaccgccaatgcccgtgacatgatcggagagatcgagaaccgctctgctcacttgctcgctatcaaaacggatgtagaaacgcagggagatttcataaggtttttgatcaaagaagtcgagaatgcagcgtttacagacattaacgatg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

10.82

Weight (kDa)

6.18

Isoelectric Point (pI)

59.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18570 AT4G18570
fragaria_vesca FvH4_3g08000
malus_domestica MD05G1303500.v1.1 MD10G1282700.v1.1
prunus_persica Prupe.4G059200_v2.0.a1
pyrus_communis pycom05g28050 pycom10g23580
rosa_chinensis RchiOBHm_Chr5g0010311
rosa_laevigata RLG00000031736
rosa_multiflora Rmu_co8025906.1_g000001 Rmu_sc0012578.1_g000002
rosa_roxburghii Rroxscaffold_1G00065940
rosa_rugosa Rorug04G0450100
rosa_samantha Rh5AG081200 Rh5BG076100 Rh5CG089400 Rh5DG076800
rosa_wichuraiana Rw5G007520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 119
AccB1I GGYRCC 1 cut(s) 119
AccBSI CCGCTC 1 cut(s) 186
AciI CCGC 6 cut(s) 11, 14, 17, 94, 147, 184
AcoI YGGCCR 1 cut(s) 141
AfaI GTAC 1 cut(s) 121
AfiI CCNNNNNNNGG 1 cut(s) 23
AluBI AGCT 1 cut(s) 128
AluI AGCT 1 cut(s) 128
Alw26I GTCTC 1 cut(s) 105
AoxI GGCC 1 cut(s) 141
ApeKI GCWGC 1 cut(s) 269
Asp718I GGTACC 1 cut(s) 119
AsuHPI GGTGA 2 cut(s) 49, 61
BaeI ACNNNNGTAYC 2 cut(s) 103, 136
BanI GGYRCC 1 cut(s) 119
BarI GAAGNNNNNNTAC 2 cut(s) 112, 144
BbsI GAAGAC 1 cut(s) 38
BbvI GCAGC 1 cut(s) 281
BclI TGATCA 1 cut(s) 249
BcoDI GTCTC 1 cut(s) 105
BisI GCNGC 3 cut(s) 14, 17, 270
BlsI GCNGC 3 cut(s) 15, 18, 271
BmiI GGNNCC 1 cut(s) 121
BmsI GCATC 1 cut(s) 81
BpiI GAAGAC 1 cut(s) 38
BplI GAGNNNNNCTC 4 cut(s) 88, 120, 170, 202
BsaWI WCCGGW 2 cut(s) 116, 122
Bsc4I CCNNNNNNNGG 1 cut(s) 23
Bse118I RCCGGY 1 cut(s) 139
BseGI GGATG 1 cut(s) 220
BseLI CCNNNNNNNGG 1 cut(s) 23
BseXI GCAGC 1 cut(s) 281
BshFI GGCC 1 cut(s) 143
BshNI GGYRCC 1 cut(s) 119
BsiSI CCGG 4 cut(s) 62, 117, 123, 140
BslI CCNNNNNNNGG 1 cut(s) 23
BsmAI GTCTC 1 cut(s) 105
BsmI GAATGC 1 cut(s) 271
BsnI GGCC 1 cut(s) 143
Bsp143I GATC 3 cut(s) 165, 174, 249
BspACI CCGC 6 cut(s) 11, 14, 17, 94, 147, 184
BspANI GGCC 1 cut(s) 143
BspLI GGNNCC 1 cut(s) 121
BspT107I GGYRCC 1 cut(s) 119
BsrBI CCGCTC 1 cut(s) 186
BsrFI RCCGGY 1 cut(s) 139
BssAI RCCGGY 1 cut(s) 139
BssMI GATC 3 cut(s) 165, 174, 249
Bst4CI ACNGT 1 cut(s) 37
BstC8I GCNNGC 1 cut(s) 201
BstF5I GGATG 1 cut(s) 220
BstKTI GATC 3 cut(s) 168, 177, 252
BstMAI GTCTC 1 cut(s) 105
BstMBI GATC 3 cut(s) 165, 174, 249
BstMWI GCNNNNNNNGC 1 cut(s) 134
BstV1I GCAGC 1 cut(s) 281
BstV2I GAAGAC 1 cut(s) 38
BsuRI GGCC 1 cut(s) 143
BtsCI GGATG 1 cut(s) 220
Cac8I GCNNGC 1 cut(s) 201
Cfr10I RCCGGY 1 cut(s) 139
CseI GACGC 1 cut(s) 143
Csp6I GTAC 1 cut(s) 120
CviAII CATG 1 cut(s) 163
CviJI RGCY 2 cut(s) 128, 143
CviKI_1 RGCY 2 cut(s) 128, 143
CviQI GTAC 1 cut(s) 120
DpnI GATC 3 cut(s) 167, 176, 251
DpnII GATC 3 cut(s) 165, 174, 249
EaeI YGGCCR 1 cut(s) 141
FaeI CATG 1 cut(s) 166
FaiI YATR 2 cut(s) 164, 239
FatI CATG 1 cut(s) 162
FbaI TGATCA 1 cut(s) 249
Fnu4HI GCNGC 3 cut(s) 14, 17, 270
FokI GGATG 1 cut(s) 227
Fsp4HI GCNGC 3 cut(s) 14, 17, 270
GluI GCNGC 3 cut(s) 14, 17, 270
HaeIII GGCC 1 cut(s) 143
HapII CCGG 4 cut(s) 62, 117, 123, 140
HgaI GACGC 1 cut(s) 143
Hin1II CATG 1 cut(s) 166
HinfI GANTC 2 cut(s) 101, 113
HpaII CCGG 4 cut(s) 62, 117, 123, 140
HphI GGTGA 2 cut(s) 49, 61
Hpy166II GTNNAC 1 cut(s) 276
Hpy188I TCNGA 4 cut(s) 90, 108, 133, 170
Hpy188III TCNNGA 2 cut(s) 178, 262
Hpy8I GTNNAC 1 cut(s) 276
Hpy99I CGWCG 1 cut(s) 137
HpyAV CCTTC 2 cut(s) 16, 40
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4V TGCA 1 cut(s) 269
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
Hsp92II CATG 1 cut(s) 166
KpnI GGTACC 1 cut(s) 123
Ksp22I TGATCA 1 cut(s) 249
Kzo9I GATC 3 cut(s) 165, 174, 249
LmnI GCTCC 1 cut(s) 125
LpnPI CCDG 5 cut(s) 75, 130, 136, 153, 212
Lsp1109I GCAGC 1 cut(s) 281
LweI GCATC 1 cut(s) 81
MaeIII GTNAC 2 cut(s) 37, 158
MalI GATC 3 cut(s) 167, 176, 251
MbiI CCGCTC 1 cut(s) 186
MboI GATC 3 cut(s) 165, 174, 249
MboII GAAGA 1 cut(s) 43
MlyI GAGTC 1 cut(s) 107
MmeI TCCRAC 1 cut(s) 156
MnlI CCTC 6 cut(s) 12, 15, 21, 45, 58, 90
MseI TTAA 1 cut(s) 285
MspI CCGG 4 cut(s) 62, 117, 123, 140
Mva1269I GAATGC 1 cut(s) 271
MwoI GCNNNNNNNGC 1 cut(s) 134
NdeII GATC 3 cut(s) 165, 174, 249
NlaIII CATG 1 cut(s) 166
NlaIV GGNNCC 1 cut(s) 121
NmuCI GTSAC 2 cut(s) 37, 158
PcsI WCGNNNNNNNCGW 1 cut(s) 174
PctI GAATGC 1 cut(s) 271
PfeI GAWTC 1 cut(s) 101
PkrI GCNGC 3 cut(s) 15, 18, 271
PleI GAGTC 1 cut(s) 107
PpsI GAGTC 1 cut(s) 107
PspN4I GGNNCC 1 cut(s) 121
RsaI GTAC 1 cut(s) 121
RsaNI GTAC 1 cut(s) 120
SaqAI TTAA 1 cut(s) 285
SatI GCNGC 3 cut(s) 14, 17, 270
Sau3AI GATC 3 cut(s) 165, 174, 249
SchI GAGTC 1 cut(s) 107
SetI ASST 4 cut(s) 51, 69, 130, 245
SfaNI GCATC 1 cut(s) 81
SsiI CCGC 6 cut(s) 11, 14, 17, 94, 147, 184
TaaI ACNGT 1 cut(s) 37
TaqI TCGA 2 cut(s) 177, 261
TauI GCSGC 2 cut(s) 16, 19
TfiI GAWTC 1 cut(s) 101
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TseFI GTSAC 2 cut(s) 37, 158
TseI GCWGC 1 cut(s) 269
Tsp45I GTSAC 2 cut(s) 37, 158
TspDTI ATGAA 1 cut(s) 226
TspGWI ACGGA 2 cut(s) 56, 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.