Rh5DG076800

Protein CHUP1, chloroplastic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0012111
Physical Location & Seq
Forward (+)
6690831 .. 6694561
3731 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG076800.1

Sequence Viewer

Length: 1851 bp
ATGGTAGCTGGGAAGGTGAGGGTAGCAATGGGGTTACAGAAATCCCCATCGCCGGCGCGTAGTAGTAAGCCAGAGCCGCCTCCGAAGCCGCCGTCGCCGTCAGTGAGTTCCGGCAAGTCGTCGCAGAAGGCGGTGTTCTCACGCTCCTTTGGCGTGTACTTCCCCCGCTCCTCCGCGCAGGTCCAGCCCAAGCCGCCGGACGTGACGGAGCTGCTCCGACTAGTGGAGGAGCTCCGGGACCGGGAGTCGAGGCTGAAGACGGAGCTTCTGGAGTACAAGCTGCTGAAGGAGTCGGTCGCCATTGTTCCGGTGCTGGAAAACCAGATCTTTAACAAGGACGAGGAGATTGGGAGAGCCAACAGAAAGATTGAAGTGCTTGAGAGCGAGAACAGGAGGTTGAGGAGTGAAGCGGAGTTGGTTAGGGTGGAGTTGGAGGAAGAGAGGAGGGAGAGCGAGAATAAAGTGGAGGAAATGGAGGCGAAAATCAAAGCTATCCAGGCGGAGATTTCGGAGATGAAGAAGGCGGCGTCGGAAAGCGACGAGCTTTCGTCGTCGCAGAGATTTCAGGGACTGATGGAGGTGTCCGTTAGGTCCAATCTGATCAAGAACTTGAAGAAGGGAGTGAAATGTACGGACATCAGTGCAAGCCTGGAGAATCAGCAAAGACTGGAACGCTCGGATTCGAAGAGAGAGGAAGTTGAGATTGAAATGCCGAGACACTCCAGGTGTAACTCGGAGGATTTCGCCGAGCCGACTCTGTCTACTCTCAGATCTCGAATCCCTAGGGTTCCGAAACCGCCGCCGAGACCGTCGTCGTCGTCGTCATCCAACGGTGAAAACAAGGCCTCTACAACAGGAGAGCAAGCCAACATTCCACCTCCGCCTCCGCCGCCGCGACCGGCTCAGGCGAAGGTGGCACCTCCACCGCCGCCTCCACCGTCACGATCGGCGCCGCCTCCTCCACCGCCGCCGCCGAAGGGGAGGAAGACGGTGACGGAGAAGGTGAGGCGAGTGCCGGAGGTTGTGGAGTTTTACCACTCTCTGATGCGGAGGGATTCTCGGAGAGACTCCGGTACCGGAGCTTCCGACGCACCGGCCACCGCCAATGCCCGTGACATGATCGGAGAGATCGAGAACCGCTCTGCTCACTTGCTCGCTATCAAAACGGATGTAGAAACGCAGGGAGATTTCATAAGGTTTTTGATCAAAGAAGTCGAGAATGCAGCGTTTACAGACATTAACGATGTTGTGCCTTTTGTCAAATGGCTGGATGATGAGCTCTCTTATTTGGTGGATGAAAGAGCTGTGCTTAAGCATTTTGACTGGCCGGAGCAGAAGGCTGACGCTCTGCGTGAGGCTGCATTCGGGTATTGCGATCTCAAGAAGCTTGAAACAGAGGCTTCTTTGTTCCCTGACCATTCTCGCCAGCCCTGCGGTCCAACCCTTAAGAAGATGCAGGCTTTGCTTGAAAAATTGGAGCATGGTGTTTACAACCTTTCGAGGATGAGAGAATCCGCGACGAAAAGATACAAAGTTTTCCAGATTCCTACAAATTGGATGCTGGATACTGAGTTTGTAAGCCAGATCAAGCTGGCATCCGTAAAATTGGCAATGAAGTATATGAAGAGAGTCTCTGCGGAGCTGGAAATAGTAGGTGGTGGTGGCCCAGAAGAAGAAGAGCTGATAGTTCAAGGCGTTCGATTTGCCTTCCGTGTGCATCAGTTTGCTGGTGGTTTCGATGCAGAAACGATGAGAGCTTTCCAGGTATTGAGAGATAAAGTGAGATCATGCCATGTACAATGCCAAAACCAGCAACAGCAAAAATTTGTTTGCAAGTCCACACCATGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

616

Amino Acids

69.29

Weight (kDa)

8.85

Isoelectric Point (pI)

65.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18570 AT4G18570
fragaria_vesca FvH4_3g08000
malus_domestica MD05G1303500.v1.1 MD10G1282700.v1.1
prunus_persica Prupe.4G059200_v2.0.a1
pyrus_communis pycom05g28050 pycom10g23580
rosa_chinensis RchiOBHm_Chr5g0010311
rosa_laevigata RLG00000031736
rosa_multiflora Rmu_co8025906.1_g000001 Rmu_sc0012578.1_g000002
rosa_roxburghii Rroxscaffold_1G00065940
rosa_rugosa Rorug04G0450100
rosa_samantha Rh5AG081200 Rh5BG076100 Rh5CG089400 Rh5DG076800
rosa_wichuraiana Rw5G007520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 169
Acc65I GGTACC 1 cut(s) 1073
AccB1I GGYRCC 3 cut(s) 916, 949, 1073
AccBSI CCGCTC 2 cut(s) 168, 1140
AccI GTMKAC 1 cut(s) 761
AccII CGCG 4 cut(s) 58, 176, 895, 1517
AcoI YGGCCR 2 cut(s) 1095, 1325
AcsI RAATTY 1 cut(s) 1823
AcuI CTGAAG 2 cut(s) 275, 305
AcyI GRCGYC 2 cut(s) 527, 950
AfaI GTAC 5 cut(s) 158, 275, 631, 1075, 1797
AfiI CCNNNNNNNGG 4 cut(s) 52, 223, 241, 977
AflII CTTAAG 2 cut(s) 1310, 1445
AgsI TTSAA 6 cut(s) 371, 613, 707, 1391, 1469, 1691
AhdI GACNNNNNGTC 1 cut(s) 244
AhlI ACTAGT 1 cut(s) 220
AjiI CACGTC 1 cut(s) 202
AjnI CCWGG 4 cut(s) 495, 648, 722, 1761
Alw21I GWGCWC 2 cut(s) 234, 1281
Alw26I GTCTC 4 cut(s) 709, 799, 1059, 1636
AlwNI CAGNNNCTG 1 cut(s) 571
AoxI GGCC 4 cut(s) 843, 1095, 1325, 1663
ApeKI GCWGC 4 cut(s) 211, 280, 1223, 1358
ApoI RAATTY 1 cut(s) 1823
ArsI GACNNNNNNTTYG 2 cut(s) 77, 109
Asp718I GGTACC 1 cut(s) 1073
AspA2I CCTAGG 1 cut(s) 782
AspLEI GCGC 3 cut(s) 58, 178, 952
AspS9I GGNCC 5 cut(s) 181, 238, 591, 1436, 1664
AsuC2I CCSGG 2 cut(s) 236, 242
AsuHPI GGTGA 4 cut(s) 28, 845, 1003, 1015
AsuII TTCGAA 1 cut(s) 683
AvaII GGWCC 4 cut(s) 181, 238, 591, 1436
AvrII CCTAGG 1 cut(s) 782
BaeI ACNNNNGTAYC 2 cut(s) 1057, 1090
BanI GGYRCC 3 cut(s) 916, 949, 1073
BanII GRGCYC 2 cut(s) 234, 1281
BarI GAAGNNNNNNTAC 2 cut(s) 1066, 1098
BbsI GAAGAC 2 cut(s) 263, 992
Bbv12I GWGCWC 2 cut(s) 234, 1281
BbvI GCAGC 4 cut(s) 198, 267, 1235, 1345
BccI CCATC 2 cut(s) 55, 568
BceAI ACGGC 2 cut(s) 76, 82
BciT130I CCWGG 4 cut(s) 497, 650, 724, 1763
BciVI GTATCC 1 cut(s) 1558
BclI TGATCA 2 cut(s) 600, 1203
BcnI CCSGG 2 cut(s) 236, 242
BcoDI GTCTC 4 cut(s) 709, 799, 1059, 1636
BcuI ACTAGT 1 cut(s) 220
BfaI CTAG 2 cut(s) 221, 783
BfoI RGCGCY 1 cut(s) 953
BfrI CTTAAG 2 cut(s) 1310, 1445
BfuAI ACCTGC 1 cut(s) 169
BfuI GTATCC 1 cut(s) 1558
BglII AGATCT 2 cut(s) 324, 770
BlnI CCTAGG 1 cut(s) 782
Bme1390I CCNGG 6 cut(s) 236, 242, 497, 650, 724, 1763
Bme18I GGWCC 4 cut(s) 181, 238, 591, 1436
BmeRI GACNNNNNGTC 1 cut(s) 244
BmgBI CACGTC 1 cut(s) 202
BmgT120I GGNCC 5 cut(s) 181, 238, 591, 1436, 1664
BmiI GGNNCC 5 cut(s) 239, 789, 918, 951, 1075
BmrFI CCNGG 6 cut(s) 236, 242, 497, 650, 724, 1763
BmsI GCATC 6 cut(s) 1035, 1443, 1548, 1604, 1726, 1729
BoxI GACNNNNGTC 1 cut(s) 811
BpiI GAAGAC 2 cut(s) 263, 992
BplI GAGNNNNNCTC 4 cut(s) 1042, 1074, 1124, 1156
BpmI CTGGAG 3 cut(s) 290, 671, 706
Bpu10I CCTNAGC 1 cut(s) 903
Bpu14I TTCGAA 1 cut(s) 683
BpuEI CTTGAG 2 cut(s) 398, 1364
BpuMI CCSGG 2 cut(s) 236, 242
BsaHI GRCGYC 2 cut(s) 527, 950
BsaI GGTCTC 1 cut(s) 799
BsaJI CCNNGG 1 cut(s) 782
BsaWI WCCGGW 3 cut(s) 307, 1070, 1076
Bsc4I CCNNNNNNNGG 4 cut(s) 52, 223, 241, 977
Bse118I RCCGGY 3 cut(s) 52, 898, 1093
Bse1I ACTGG 2 cut(s) 672, 1328
Bse3DI GCAATG 2 cut(s) 33, 1617
BseBI CCWGG 4 cut(s) 497, 650, 724, 1763
BseDI CCNNGG 1 cut(s) 782
BseGI GGATG 7 cut(s) 824, 1174, 1276, 1300, 1509, 1563, 1595
BseLI CCNNNNNNNGG 4 cut(s) 52, 223, 241, 977
BseMI GCAATG 2 cut(s) 33, 1617
BseMII CTCAG 3 cut(s) 781, 917, 1560
BseNI ACTGG 2 cut(s) 672, 1328
BseRI GAGGAG 6 cut(s) 160, 242, 356, 415, 457, 948
BseXI GCAGC 4 cut(s) 198, 267, 1235, 1345
BseYI CCCAGC 1 cut(s) 8
Bsh1236I CGCG 4 cut(s) 58, 176, 895, 1517
Bsh1285I CGRYCG 3 cut(s) 297, 899, 947
BshFI GGCC 4 cut(s) 845, 1097, 1327, 1665
BshNI GGYRCC 3 cut(s) 916, 949, 1073
BsiEI CGRYCG 3 cut(s) 297, 899, 947
BsiHKAI GWGCWC 2 cut(s) 234, 1281
BslFI GGGAC 2 cut(s) 251, 582
BslI CCNNNNNNNGG 4 cut(s) 52, 223, 241, 977
BsmAI GTCTC 4 cut(s) 709, 799, 1059, 1636
BsmFI GGGAC 2 cut(s) 251, 582
BsmI GAATGC 2 cut(s) 1225, 1361
BsnI GGCC 4 cut(s) 845, 1097, 1327, 1665
Bso31I GGTCTC 1 cut(s) 799
Bsp119I TTCGAA 1 cut(s) 683
Bsp1286I GDGCHC 2 cut(s) 234, 1281
Bsp1407I TGTACA 1 cut(s) 1795
BspANI GGCC 4 cut(s) 845, 1097, 1327, 1665
BspCNI CTCAG 3 cut(s) 780, 916, 1561
BspFNI CGCG 4 cut(s) 58, 176, 895, 1517
BspLI GGNNCC 5 cut(s) 239, 789, 918, 951, 1075
BspMI ACCTGC 1 cut(s) 169
BspQI GCTCTTC 1 cut(s) 1671
BspT104I TTCGAA 1 cut(s) 683
BspT107I GGYRCC 3 cut(s) 916, 949, 1073
BspTI CTTAAG 2 cut(s) 1310, 1445
BspTNI GGTCTC 1 cut(s) 799
BsrBI CCGCTC 2 cut(s) 168, 1140
BsrDI GCAATG 2 cut(s) 33, 1617
BsrFI RCCGGY 3 cut(s) 52, 898, 1093
BsrGI TGTACA 1 cut(s) 1795
BsrI ACTGG 2 cut(s) 672, 1328
BssAI RCCGGY 3 cut(s) 52, 898, 1093
BssECI CCNNGG 1 cut(s) 782
BssNI GRCGYC 2 cut(s) 527, 950
BssT1I CCWWGG 1 cut(s) 782
Bst2UI CCWGG 4 cut(s) 497, 650, 724, 1763
Bst4CI ACNGT 4 cut(s) 810, 833, 939, 991
Bst6I CTCTTC 4 cut(s) 432, 680, 1619, 1671
BstACI GRCGYC 2 cut(s) 527, 950
BstAFI CTTAAG 2 cut(s) 1310, 1445
BstAPI GCANNNNNTGC 1 cut(s) 1462
BstAUI TGTACA 1 cut(s) 1795
BstBI TTCGAA 1 cut(s) 683
BstC8I GCNNGC 7 cut(s) 54, 646, 864, 1155, 1427, 1458, 1593
BstDEI CTNAG 3 cut(s) 767, 903, 1569
BstF5I GGATG 7 cut(s) 824, 1174, 1276, 1300, 1509, 1563, 1595
BstFNI CGCG 4 cut(s) 58, 176, 895, 1517
BstH2I RGCGCY 1 cut(s) 953
BstHHI GCGC 3 cut(s) 58, 178, 952
BstMAI GTCTC 4 cut(s) 709, 799, 1059, 1636
BstMCI CGRYCG 3 cut(s) 297, 899, 947
BstNI CCWGG 4 cut(s) 497, 650, 724, 1763
BstPAI GACNNNNGTC 1 cut(s) 811
BstSCI CCNGG 6 cut(s) 234, 240, 495, 648, 722, 1761
BstUI CGCG 4 cut(s) 58, 176, 895, 1517
BstV1I GCAGC 4 cut(s) 198, 267, 1235, 1345
BstV2I GAAGAC 2 cut(s) 263, 992
BstX2I RGATCY 2 cut(s) 324, 770
BstYI RGATCY 2 cut(s) 324, 770
BsuI GTATCC 1 cut(s) 1558
BsuRI GGCC 4 cut(s) 845, 1097, 1327, 1665
BtgZI GCGATG 1 cut(s) 33
BtrI CACGTC 1 cut(s) 202
BtsCI GGATG 7 cut(s) 824, 1174, 1276, 1300, 1509, 1563, 1595
BtsIMutI CAGTG 2 cut(s) 108, 646
BveI ACCTGC 1 cut(s) 169
Cac8I GCNNGC 7 cut(s) 54, 646, 864, 1155, 1427, 1458, 1593
CaiI CAGNNNCTG 1 cut(s) 571
CfoI GCGC 3 cut(s) 58, 178, 952
Cfr10I RCCGGY 3 cut(s) 52, 898, 1093
Cfr13I GGNCC 5 cut(s) 181, 238, 591, 1436, 1664
CseI GACGC 3 cut(s) 516, 1097, 1352
Csp6I GTAC 5 cut(s) 157, 274, 630, 1074, 1796
CviAII CATG 5 cut(s) 1117, 1481, 1788, 1793, 1845
CviQI GTAC 5 cut(s) 157, 274, 630, 1074, 1796
DdeI CTNAG 3 cut(s) 767, 903, 1569
DinI GGCGCC 1 cut(s) 951
DriI GACNNNNNGTC 1 cut(s) 244
EaeI YGGCCR 2 cut(s) 1095, 1325
Eam1104I CTCTTC 4 cut(s) 432, 680, 1619, 1671
Eam1105I GACNNNNNGTC 1 cut(s) 244
EarI CTCTTC 4 cut(s) 432, 680, 1619, 1671
EciI GGCGGA 3 cut(s) 515, 870, 876
Ecl136II GAGCTC 2 cut(s) 232, 1279
Eco130I CCWWGG 1 cut(s) 782
Eco147I AGGCCT 1 cut(s) 845
Eco24I GRGCYC 2 cut(s) 234, 1281
Eco31I GGTCTC 1 cut(s) 799
Eco47I GGWCC 4 cut(s) 181, 238, 591, 1436
Eco53kI GAGCTC 2 cut(s) 232, 1279
Eco57I CTGAAG 2 cut(s) 275, 305
EcoICRI GAGCTC 2 cut(s) 232, 1279
EcoRII CCWGG 4 cut(s) 495, 648, 722, 1761
EcoT14I CCWWGG 1 cut(s) 782
EcoT38I GRGCYC 2 cut(s) 234, 1281
EgeI GGCGCC 1 cut(s) 951
EheI GGCGCC 1 cut(s) 951
ErhI CCWWGG 1 cut(s) 782
FaeI CATG 5 cut(s) 1120, 1484, 1791, 1796, 1848
FaiI YATR 8 cut(s) 1118, 1193, 1482, 1620, 1622, 1789, 1794, 1846
FaqI GGGAC 2 cut(s) 251, 582
FatI CATG 5 cut(s) 1116, 1480, 1787, 1792, 1844
FauI CCCGC 1 cut(s) 173
FbaI TGATCA 2 cut(s) 600, 1203
FblI GTMKAC 1 cut(s) 761
FokI GGATG 7 cut(s) 811, 1181, 1283, 1307, 1516, 1570, 1582
FriOI GRGCYC 2 cut(s) 234, 1281
FspBI CTAG 2 cut(s) 221, 783
GlaI GCGC 3 cut(s) 57, 177, 951
GsaI CCCAGC 1 cut(s) 12
GsuI CTGGAG 3 cut(s) 290, 671, 706
HaeII RGCGCY 1 cut(s) 953
HaeIII GGCC 4 cut(s) 845, 1097, 1327, 1665
HgaI GACGC 3 cut(s) 516, 1097, 1352
HhaI GCGC 3 cut(s) 58, 178, 952
Hin1I GRCGYC 2 cut(s) 527, 950
Hin1II CATG 5 cut(s) 1120, 1484, 1791, 1796, 1848
Hin6I GCGC 3 cut(s) 56, 176, 950
HinP1I GCGC 3 cut(s) 56, 176, 950
HindIII AAGCTT 1 cut(s) 1385
HphI GGTGA 4 cut(s) 28, 845, 1003, 1015
Hpy166II GTNNAC 5 cut(s) 157, 762, 1230, 1489, 1839
Hpy188III TCNNGA 8 cut(s) 269, 604, 774, 942, 1132, 1216, 1381, 1540
Hpy8I GTNNAC 5 cut(s) 157, 762, 1230, 1489, 1839
HpyCH4III ACNGT 4 cut(s) 810, 833, 939, 991
HpyCH4IV ACGT 1 cut(s) 201
HpyCH4V TGCA 7 cut(s) 644, 1223, 1361, 1456, 1717, 1742, 1833
HpyF3I CTNAG 3 cut(s) 767, 903, 1569
HpySE526I ACGT 1 cut(s) 201
Hsp92I GRCGYC 2 cut(s) 527, 950
Hsp92II CATG 5 cut(s) 1120, 1484, 1791, 1796, 1848
HspAI GCGC 3 cut(s) 56, 176, 950
KasI GGCGCC 1 cut(s) 949
KpnI GGTACC 1 cut(s) 1077
KroI GCCGGC 1 cut(s) 52
KroNI GCCGGC 1 cut(s) 54
Ksp22I TGATCA 2 cut(s) 600, 1203
LguI GCTCTTC 1 cut(s) 1671
Lsp1109I GCAGC 4 cut(s) 198, 267, 1235, 1345
LweI GCATC 6 cut(s) 1035, 1443, 1548, 1604, 1726, 1729
MaeI CTAG 2 cut(s) 221, 783
MaeII ACGT 1 cut(s) 201
MaeIII GTNAC 6 cut(s) 33, 202, 728, 939, 991, 1112
MbiI CCGCTC 2 cut(s) 168, 1140
MflI RGATCY 2 cut(s) 324, 770
MhlI GDGCHC 2 cut(s) 234, 1281
MluCI AATT 4 cut(s) 1472, 1552, 1604, 1823
Mly113I GGCGCC 1 cut(s) 950
MlyI GAGTC 5 cut(s) 254, 299, 748, 1061, 1638
MmeI TCCRAC 6 cut(s) 241, 411, 510, 852, 1110, 1463
MreI CGCCGGCG 1 cut(s) 52
MroNI GCCGGC 1 cut(s) 52
MseI TTAA 4 cut(s) 330, 1239, 1311, 1446
MspCI CTTAAG 2 cut(s) 1310, 1445
MspR9I CCNGG 6 cut(s) 236, 242, 497, 650, 724, 1763
Mva1269I GAATGC 2 cut(s) 1225, 1361
MvaI CCWGG 4 cut(s) 497, 650, 724, 1763
MvnI CGCG 4 cut(s) 58, 176, 895, 1517
NaeI GCCGGC 1 cut(s) 54
NarI GGCGCC 1 cut(s) 950
NciI CCSGG 2 cut(s) 236, 242
NgoMIV GCCGGC 1 cut(s) 52
NlaIII CATG 5 cut(s) 1120, 1484, 1791, 1796, 1848
NlaIV GGNNCC 5 cut(s) 239, 789, 918, 951, 1075
NmeAIII GCCGAG 3 cut(s) 738, 772, 828
NmuCI GTSAC 4 cut(s) 202, 939, 991, 1112
NspV TTCGAA 1 cut(s) 683
PceI AGGCCT 1 cut(s) 845
PciSI GCTCTTC 1 cut(s) 1671
PcsI WCGNNNNNNNCGW 3 cut(s) 818, 1128, 1371
PctI GAATGC 2 cut(s) 1225, 1361
PdiI GCCGGC 1 cut(s) 54
PfeI GAWTC 6 cut(s) 655, 680, 777, 1055, 1511, 1543
PflFI GACNNNGTC 1 cut(s) 757
PfoI TCCNGGA 1 cut(s) 234
Ple19I CGATCG 1 cut(s) 947
PleI GAGTC 5 cut(s) 253, 298, 748, 1061, 1637
PluTI GGCGCC 1 cut(s) 953
PpsI GAGTC 5 cut(s) 253, 298, 748, 1061, 1637
PshAI GACNNNNGTC 1 cut(s) 811
Psp124BI GAGCTC 2 cut(s) 234, 1281
Psp6I CCWGG 4 cut(s) 495, 648, 722, 1761
PspFI CCCAGC 1 cut(s) 8
PspGI CCWGG 4 cut(s) 495, 648, 722, 1761
PspN4I GGNNCC 5 cut(s) 239, 789, 918, 951, 1075
PspPI GGNCC 5 cut(s) 181, 238, 591, 1436, 1664
PstNI CAGNNNCTG 1 cut(s) 571
PsuI RGATCY 2 cut(s) 324, 770
PsyI GACNNNGTC 1 cut(s) 757
PvuI CGATCG 1 cut(s) 947
RsaI GTAC 5 cut(s) 158, 275, 631, 1075, 1797
RsaNI GTAC 5 cut(s) 157, 274, 630, 1074, 1796
SacI GAGCTC 2 cut(s) 234, 1281
SapI GCTCTTC 1 cut(s) 1671
SaqAI TTAA 4 cut(s) 330, 1239, 1311, 1446
Sau96I GGNCC 5 cut(s) 181, 238, 591, 1436, 1664
SchI GAGTC 5 cut(s) 254, 299, 748, 1061, 1638
ScrFI CCNGG 6 cut(s) 236, 242, 497, 650, 724, 1763
SduI GDGCHC 2 cut(s) 234, 1281
SfaNI GCATC 6 cut(s) 1035, 1443, 1548, 1604, 1726, 1729
SfoI GGCGCC 1 cut(s) 951
SfuI TTCGAA 1 cut(s) 683
SgrAI CRCCGGYG 1 cut(s) 52
SinI GGWCC 4 cut(s) 181, 238, 591, 1436
SmlI CTYRAG 4 cut(s) 377, 1310, 1379, 1445
SmoI CTYRAG 4 cut(s) 377, 1310, 1379, 1445
SpeI ACTAGT 1 cut(s) 220
Sse9I AATT 4 cut(s) 1472, 1552, 1604, 1823
SseBI AGGCCT 1 cut(s) 845
SspDI GGCGCC 1 cut(s) 949
SspMI CTAG 2 cut(s) 221, 783
SstI GAGCTC 2 cut(s) 234, 1281
StuI AGGCCT 1 cut(s) 845
StyD4I CCNGG 6 cut(s) 234, 240, 495, 648, 722, 1761
StyI CCWWGG 1 cut(s) 782
TaaI ACNGT 4 cut(s) 810, 833, 939, 991
TaiI ACGT 1 cut(s) 204
TaqI TCGA 8 cut(s) 248, 683, 775, 1131, 1215, 1499, 1699, 1737
TaqII GACCGA 1 cut(s) 283
TasI AATT 4 cut(s) 1472, 1552, 1604, 1823
TatI WGTACW 3 cut(s) 156, 273, 1795
TfiI GAWTC 6 cut(s) 655, 680, 777, 1055, 1511, 1543
Tru1I TTAA 4 cut(s) 330, 1239, 1311, 1446
Tru9I TTAA 4 cut(s) 330, 1239, 1311, 1446
TscAI CASTG 2 cut(s) 108, 646
TseFI GTSAC 4 cut(s) 202, 939, 991, 1112
TseI GCWGC 4 cut(s) 211, 280, 1223, 1358
Tsp45I GTSAC 4 cut(s) 202, 939, 991, 1112
TspDTI ATGAA 5 cut(s) 530, 1180, 1311, 1628, 1637
TspGWI ACGGA 8 cut(s) 221, 275, 574, 647, 1010, 1181, 1588, 1700
TspRI CASTG 2 cut(s) 108, 646
Tth111I GACNNNGTC 1 cut(s) 757
Vha464I CTTAAG 2 cut(s) 1310, 1445
VpaK11BI GGWCC 4 cut(s) 181, 238, 591, 1436
XapI RAATTY 1 cut(s) 1823
XmaJI CCTAGG 1 cut(s) 782
XmiI GTMKAC 1 cut(s) 761
XspI CTAG 2 cut(s) 221, 783
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.