Rw5G007520

Protein CHUP1, chloroplastic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0012111
Physical Location & Seq
Forward (+)
7954806 .. 7959082
4277 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G007520.1

Sequence Viewer

Length: 1854 bp
ATGGTAGCTGGGAAGGTGAGGGTAGCAATGGGGTTACAGAAATCCCCATCGCCGGCGCGTAGTAGTAAGCCAGAGCCGCCTCCGAAGCCGCCGTCGCCGTCAGTGAGTTCCGGCAAGTCGTCGCAGAAGGCGGTGTTCTCACGCTCCTTTGGCGTGTACTTCCCCCGCTCCTCCGCGCAGGTCCAGCCCAAGCCGCCGGACGTGACGGAGCTGCTCCGACTAGTGGAGGAGCTCCGGGACCGGGAGTCGAGGCTGAAGACGGAGCTTCTGGAGTACAAGCTGATGAAGGAGTCGGTCGCCATTGTTCCGGTGCTGGAAAACCAGATCTTTAACAAGGACGAGGAGATTGGGAGAGCCAACAGAAAAATTGAAGTGCTTGAGAGCGAGAACAGGAGGTTGAGGAGTGAAGCGGAGTTGGTTAGGGCGGAGTTGGAGGAAGAGAGGAGGGAGAGCGAGAATAAAGTGGAGGAAATGGAGGCGAAAATCAAAGCTATCCAGGCGGAGATTTCGGAGATGAAGAAGGCGGCGTCGGAAAGCGACGAGCTTTCGTCGTCGCAGAGATTTCAGGGACTGATGGAGGTGTCCGTTAGGTCCAATCTGATCAAGAACTTGAAGAAGGGAGTGAAATGTACGGACATCAGTGCAAGCCTGGAGAATCAGCAAAGACTGGAACGCTCGGATTCGAAGAGAGAGGAGGTTGAGATTGAAATGCCGAGACACTCCAGGTGCAACTCGGAGGATTTCGCCGAGCCGACTCTGTCTACTCTCAGATCTCGAATCCCTAGGGTTCCGAAACCGCCGCCGAGACCGTCGACGTCGTCGTCGTCATCCAACGGTGAAAACAAGGCCTCTACAACAGGAGAGCAAGCCAACATTCCACCTCCGCCTCCGCCGCCGCGACCGGCTCAGGCGAAGGTGGCACCTCCACCGCCGCCTCCACCGTCACGATCGGCGCCGCCTCCTCCACCGCCGCCGCCGAAGGGGAGGAAGACGGTGACGGAGAAGGTGAGGCGAGTGCCGGAGGTTGTGGAGTTTTACCACTCTCTGATGCGGAGGGATTCTCGGAGAGACTCCGGTACCGGAGCTTCCGACGCACCGGCCACCGCCAATGCCCGTGACATGATCGGAGAGATCGAGAACCGCTCCGCTCACTTGCTCGCTATCAAAACGGATGTAGAAACGCAGGGAGATTTCATAAGGTTTTTGATCAAAGAAGTCGAGAATGCAGCGTTTACAGACATTAACGATGTGGTGCCTTTTGTCAAATGGCTGGATGATGAGCTCTCTTATTTGGTGGATGAAAGAGCTGTGCTTAAGCATTTTGACTGGCCGGAGCAGAAGGCTGACGCTCTGCGTGAGGCTGCATTCGGGTATTGCGATCTCAAGAAGCTTGAAACAGAGGCTTCTTTGTTCCCTGACCATTCTCGCCAGCCCTGCGGTCCAACCCTTAAGAAGATGCAGGCTTTGCTTGAAAAATTGGAGCATGGTGTTTACAACCTTTCGAGGATGAGAGAATCCGCGACGAAAAGATACAAAGTTTTCCAGATTCCTACAAATTGGATGCTGGATACTGAGTTTGTAAGCCAGATCAAGCTGGCATCCGTAAAATTGGCAATGAAGTATATGAAGAGAGTCTCTGCGGAGCTTGAAATAGTAGGTGGTGGTGGCCCAGAAGAAGAAGAGCTGATAGTTCAAGGCGTTCGATTTGCCTTCCGTGTGCATCAGTTTGCTGGTGGTTTCGATGCAGAAACGATGAGAGCTTTCCAGGTATTGAGAGATAAAGTGAGATCATGCCATGTACAGTGCCAAAACCAGCAACAGCAAAAATTTGTTTGCAAGTCCACACCATGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

617

Amino Acids

69.38

Weight (kDa)

8.85

Isoelectric Point (pI)

65.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18570 AT4G18570
fragaria_vesca FvH4_3g08000
malus_domestica MD05G1303500.v1.1 MD10G1282700.v1.1
prunus_persica Prupe.4G059200_v2.0.a1
pyrus_communis pycom05g28050 pycom10g23580
rosa_chinensis RchiOBHm_Chr5g0010311
rosa_laevigata RLG00000031736
rosa_multiflora Rmu_co8025906.1_g000001 Rmu_sc0012578.1_g000002
rosa_roxburghii Rroxscaffold_1G00065940
rosa_rugosa Rorug04G0450100
rosa_samantha Rh5AG081200 Rh5BG076100 Rh5CG089400 Rh5DG076800
rosa_wichuraiana Rw5G007520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 820
AatII GACGTC 1 cut(s) 818
Acc36I ACCTGC 1 cut(s) 169
Acc65I GGTACC 1 cut(s) 1076
AccB1I GGYRCC 4 cut(s) 919, 952, 1076, 1252
AccBSI CCGCTC 3 cut(s) 168, 1143, 1148
AccI GTMKAC 2 cut(s) 761, 812
AccII CGCG 4 cut(s) 58, 176, 898, 1520
AcoI YGGCCR 2 cut(s) 1098, 1328
AcsI RAATTY 1 cut(s) 1826
AcuI CTGAAG 1 cut(s) 275
AcyI GRCGYC 3 cut(s) 527, 815, 953
AfaI GTAC 5 cut(s) 158, 275, 631, 1078, 1800
AfiI CCNNNNNNNGG 4 cut(s) 52, 223, 241, 980
AflII CTTAAG 2 cut(s) 1313, 1448
AgsI TTSAA 7 cut(s) 371, 613, 707, 1394, 1472, 1649, 1694
AhdI GACNNNNNGTC 1 cut(s) 244
AhlI ACTAGT 1 cut(s) 220
AjiI CACGTC 1 cut(s) 202
AjnI CCWGG 4 cut(s) 495, 648, 722, 1764
Alw21I GWGCWC 2 cut(s) 234, 1284
Alw26I GTCTC 4 cut(s) 709, 799, 1062, 1639
AlwNI CAGNNNCTG 1 cut(s) 571
AoxI GGCC 4 cut(s) 846, 1098, 1328, 1666
ApeKI GCWGC 3 cut(s) 211, 1226, 1361
ApoI RAATTY 1 cut(s) 1826
ArsI GACNNNNNNTTYG 2 cut(s) 77, 109
Asp718I GGTACC 1 cut(s) 1076
AspA2I CCTAGG 1 cut(s) 782
AspLEI GCGC 3 cut(s) 58, 178, 955
AspS9I GGNCC 5 cut(s) 181, 238, 591, 1439, 1667
AsuC2I CCSGG 2 cut(s) 236, 242
AsuHPI GGTGA 4 cut(s) 28, 848, 1006, 1018
AsuII TTCGAA 1 cut(s) 683
AvaII GGWCC 4 cut(s) 181, 238, 591, 1439
AvrII CCTAGG 1 cut(s) 782
BaeI ACNNNNGTAYC 2 cut(s) 1060, 1093
BanI GGYRCC 4 cut(s) 919, 952, 1076, 1252
BanII GRGCYC 2 cut(s) 234, 1284
BarI GAAGNNNNNNTAC 2 cut(s) 1069, 1101
BbsI GAAGAC 2 cut(s) 263, 995
Bbv12I GWGCWC 2 cut(s) 234, 1284
BbvI GCAGC 3 cut(s) 198, 1238, 1348
BccI CCATC 2 cut(s) 55, 568
BceAI ACGGC 2 cut(s) 76, 82
BciT130I CCWGG 4 cut(s) 497, 650, 724, 1766
BciVI GTATCC 1 cut(s) 1561
BclI TGATCA 2 cut(s) 600, 1206
BcnI CCSGG 2 cut(s) 236, 242
BcoDI GTCTC 4 cut(s) 709, 799, 1062, 1639
BcuI ACTAGT 1 cut(s) 220
BfaI CTAG 2 cut(s) 221, 783
BfoI RGCGCY 1 cut(s) 956
BfrI CTTAAG 2 cut(s) 1313, 1448
BfuAI ACCTGC 1 cut(s) 169
BfuI GTATCC 1 cut(s) 1561
BglII AGATCT 2 cut(s) 324, 770
BlnI CCTAGG 1 cut(s) 782
Bme1390I CCNGG 6 cut(s) 236, 242, 497, 650, 724, 1766
Bme18I GGWCC 4 cut(s) 181, 238, 591, 1439
BmeRI GACNNNNNGTC 1 cut(s) 244
BmgBI CACGTC 1 cut(s) 202
BmgT120I GGNCC 5 cut(s) 181, 238, 591, 1439, 1667
BmiI GGNNCC 6 cut(s) 239, 789, 921, 954, 1078, 1254
BmrFI CCNGG 6 cut(s) 236, 242, 497, 650, 724, 1766
BmsI GCATC 6 cut(s) 1038, 1446, 1551, 1607, 1729, 1732
BpiI GAAGAC 2 cut(s) 263, 995
BplI GAGNNNNNCTC 4 cut(s) 1045, 1077, 1127, 1159
BpmI CTGGAG 3 cut(s) 290, 671, 706
Bpu10I CCTNAGC 1 cut(s) 906
Bpu14I TTCGAA 1 cut(s) 683
BpuEI CTTGAG 2 cut(s) 398, 1367
BpuMI CCSGG 2 cut(s) 236, 242
BsaHI GRCGYC 3 cut(s) 527, 815, 953
BsaI GGTCTC 1 cut(s) 799
BsaJI CCNNGG 1 cut(s) 782
BsaWI WCCGGW 3 cut(s) 307, 1073, 1079
Bsc4I CCNNNNNNNGG 4 cut(s) 52, 223, 241, 980
Bse118I RCCGGY 3 cut(s) 52, 901, 1096
Bse1I ACTGG 2 cut(s) 672, 1331
Bse3DI GCAATG 2 cut(s) 33, 1620
BseBI CCWGG 4 cut(s) 497, 650, 724, 1766
BseDI CCNNGG 1 cut(s) 782
BseGI GGATG 7 cut(s) 827, 1177, 1279, 1303, 1512, 1566, 1598
BseLI CCNNNNNNNGG 4 cut(s) 52, 223, 241, 980
BseMI GCAATG 2 cut(s) 33, 1620
BseMII CTCAG 3 cut(s) 781, 920, 1563
BseNI ACTGG 2 cut(s) 672, 1331
BseRI GAGGAG 7 cut(s) 160, 242, 356, 415, 457, 707, 951
BseXI GCAGC 3 cut(s) 198, 1238, 1348
BseYI CCCAGC 1 cut(s) 8
Bsh1236I CGCG 4 cut(s) 58, 176, 898, 1520
Bsh1285I CGRYCG 3 cut(s) 297, 902, 950
BshFI GGCC 4 cut(s) 848, 1100, 1330, 1668
BshNI GGYRCC 4 cut(s) 919, 952, 1076, 1252
BsiEI CGRYCG 3 cut(s) 297, 902, 950
BsiHKAI GWGCWC 2 cut(s) 234, 1284
BslFI GGGAC 2 cut(s) 251, 582
BslI CCNNNNNNNGG 4 cut(s) 52, 223, 241, 980
BsmAI GTCTC 4 cut(s) 709, 799, 1062, 1639
BsmFI GGGAC 2 cut(s) 251, 582
BsmI GAATGC 2 cut(s) 1228, 1364
BsnI GGCC 4 cut(s) 848, 1100, 1330, 1668
Bso31I GGTCTC 1 cut(s) 799
Bsp119I TTCGAA 1 cut(s) 683
Bsp1286I GDGCHC 2 cut(s) 234, 1284
Bsp1407I TGTACA 1 cut(s) 1798
BspANI GGCC 4 cut(s) 848, 1100, 1330, 1668
BspCNI CTCAG 3 cut(s) 780, 919, 1564
BspFNI CGCG 4 cut(s) 58, 176, 898, 1520
BspLI GGNNCC 6 cut(s) 239, 789, 921, 954, 1078, 1254
BspMI ACCTGC 1 cut(s) 169
BspQI GCTCTTC 1 cut(s) 1674
BspT104I TTCGAA 1 cut(s) 683
BspT107I GGYRCC 4 cut(s) 919, 952, 1076, 1252
BspTI CTTAAG 2 cut(s) 1313, 1448
BspTNI GGTCTC 1 cut(s) 799
BsrBI CCGCTC 3 cut(s) 168, 1143, 1148
BsrDI GCAATG 2 cut(s) 33, 1620
BsrFI RCCGGY 3 cut(s) 52, 901, 1096
BsrGI TGTACA 1 cut(s) 1798
BsrI ACTGG 2 cut(s) 672, 1331
BssAI RCCGGY 3 cut(s) 52, 901, 1096
BssECI CCNNGG 1 cut(s) 782
BssNI GRCGYC 3 cut(s) 527, 815, 953
BssT1I CCWWGG 1 cut(s) 782
Bst2UI CCWGG 4 cut(s) 497, 650, 724, 1766
Bst4CI ACNGT 5 cut(s) 810, 836, 942, 994, 1803
Bst6I CTCTTC 4 cut(s) 432, 680, 1622, 1674
BstACI GRCGYC 3 cut(s) 527, 815, 953
BstAFI CTTAAG 2 cut(s) 1313, 1448
BstAPI GCANNNNNTGC 1 cut(s) 1465
BstAUI TGTACA 1 cut(s) 1798
BstBI TTCGAA 1 cut(s) 683
BstC8I GCNNGC 7 cut(s) 54, 646, 867, 1158, 1430, 1461, 1596
BstDEI CTNAG 3 cut(s) 767, 906, 1572
BstF5I GGATG 7 cut(s) 827, 1177, 1279, 1303, 1512, 1566, 1598
BstFNI CGCG 4 cut(s) 58, 176, 898, 1520
BstH2I RGCGCY 1 cut(s) 956
BstHHI GCGC 3 cut(s) 58, 178, 955
BstMAI GTCTC 4 cut(s) 709, 799, 1062, 1639
BstMCI CGRYCG 3 cut(s) 297, 902, 950
BstNI CCWGG 4 cut(s) 497, 650, 724, 1766
BstSCI CCNGG 6 cut(s) 234, 240, 495, 648, 722, 1764
BstUI CGCG 4 cut(s) 58, 176, 898, 1520
BstV1I GCAGC 3 cut(s) 198, 1238, 1348
BstV2I GAAGAC 2 cut(s) 263, 995
BstX2I RGATCY 2 cut(s) 324, 770
BstYI RGATCY 2 cut(s) 324, 770
BsuI GTATCC 1 cut(s) 1561
BsuRI GGCC 4 cut(s) 848, 1100, 1330, 1668
BtgZI GCGATG 1 cut(s) 33
BtrI CACGTC 1 cut(s) 202
BtsCI GGATG 7 cut(s) 827, 1177, 1279, 1303, 1512, 1566, 1598
BtsIMutI CAGTG 3 cut(s) 108, 646, 1808
BveI ACCTGC 1 cut(s) 169
Cac8I GCNNGC 7 cut(s) 54, 646, 867, 1158, 1430, 1461, 1596
CaiI CAGNNNCTG 1 cut(s) 571
CfoI GCGC 3 cut(s) 58, 178, 955
Cfr10I RCCGGY 3 cut(s) 52, 901, 1096
Cfr13I GGNCC 5 cut(s) 181, 238, 591, 1439, 1667
CseI GACGC 3 cut(s) 516, 1100, 1355
Csp6I GTAC 5 cut(s) 157, 274, 630, 1077, 1799
CviAII CATG 5 cut(s) 1120, 1484, 1791, 1796, 1848
CviQI GTAC 5 cut(s) 157, 274, 630, 1077, 1799
DdeI CTNAG 3 cut(s) 767, 906, 1572
DinI GGCGCC 1 cut(s) 954
DrdI GACNNNNNNGTC 1 cut(s) 820
DriI GACNNNNNGTC 1 cut(s) 244
DseDI GACNNNNNNGTC 1 cut(s) 820
EaeI YGGCCR 2 cut(s) 1098, 1328
Eam1104I CTCTTC 4 cut(s) 432, 680, 1622, 1674
Eam1105I GACNNNNNGTC 1 cut(s) 244
EarI CTCTTC 4 cut(s) 432, 680, 1622, 1674
EciI GGCGGA 4 cut(s) 440, 515, 873, 879
Ecl136II GAGCTC 2 cut(s) 232, 1282
Eco130I CCWWGG 1 cut(s) 782
Eco147I AGGCCT 1 cut(s) 848
Eco24I GRGCYC 2 cut(s) 234, 1284
Eco31I GGTCTC 1 cut(s) 799
Eco47I GGWCC 4 cut(s) 181, 238, 591, 1439
Eco53kI GAGCTC 2 cut(s) 232, 1282
Eco57I CTGAAG 1 cut(s) 275
EcoICRI GAGCTC 2 cut(s) 232, 1282
EcoRII CCWGG 4 cut(s) 495, 648, 722, 1764
EcoT14I CCWWGG 1 cut(s) 782
EcoT38I GRGCYC 2 cut(s) 234, 1284
EgeI GGCGCC 1 cut(s) 954
EheI GGCGCC 1 cut(s) 954
ErhI CCWWGG 1 cut(s) 782
FaeI CATG 5 cut(s) 1123, 1487, 1794, 1799, 1851
FaiI YATR 8 cut(s) 1121, 1196, 1485, 1623, 1625, 1792, 1797, 1849
FaqI GGGAC 2 cut(s) 251, 582
FatI CATG 5 cut(s) 1119, 1483, 1790, 1795, 1847
FauI CCCGC 1 cut(s) 173
FbaI TGATCA 2 cut(s) 600, 1206
FblI GTMKAC 2 cut(s) 761, 812
FokI GGATG 7 cut(s) 814, 1184, 1286, 1310, 1519, 1573, 1585
FriOI GRGCYC 2 cut(s) 234, 1284
FspBI CTAG 2 cut(s) 221, 783
GlaI GCGC 3 cut(s) 57, 177, 954
GsaI CCCAGC 1 cut(s) 12
GsuI CTGGAG 3 cut(s) 290, 671, 706
HaeII RGCGCY 1 cut(s) 956
HaeIII GGCC 4 cut(s) 848, 1100, 1330, 1668
HgaI GACGC 3 cut(s) 516, 1100, 1355
HhaI GCGC 3 cut(s) 58, 178, 955
Hin1I GRCGYC 3 cut(s) 527, 815, 953
Hin1II CATG 5 cut(s) 1123, 1487, 1794, 1799, 1851
Hin6I GCGC 3 cut(s) 56, 176, 953
HinP1I GCGC 3 cut(s) 56, 176, 953
HincII GTYRAC 1 cut(s) 813
HindII GTYRAC 1 cut(s) 813
HindIII AAGCTT 1 cut(s) 1388
HphI GGTGA 4 cut(s) 28, 848, 1006, 1018
Hpy166II GTNNAC 6 cut(s) 157, 762, 813, 1233, 1492, 1842
Hpy188III TCNNGA 8 cut(s) 269, 604, 774, 945, 1135, 1219, 1384, 1543
Hpy8I GTNNAC 6 cut(s) 157, 762, 813, 1233, 1492, 1842
HpyCH4III ACNGT 5 cut(s) 810, 836, 942, 994, 1803
HpyCH4IV ACGT 2 cut(s) 201, 815
HpyCH4V TGCA 8 cut(s) 644, 729, 1226, 1364, 1459, 1720, 1745, 1836
HpyF3I CTNAG 3 cut(s) 767, 906, 1572
HpySE526I ACGT 2 cut(s) 201, 815
Hsp92I GRCGYC 3 cut(s) 527, 815, 953
Hsp92II CATG 5 cut(s) 1123, 1487, 1794, 1799, 1851
HspAI GCGC 3 cut(s) 56, 176, 953
KasI GGCGCC 1 cut(s) 952
KpnI GGTACC 1 cut(s) 1080
KroI GCCGGC 1 cut(s) 52
KroNI GCCGGC 1 cut(s) 54
Ksp22I TGATCA 2 cut(s) 600, 1206
LguI GCTCTTC 1 cut(s) 1674
Lsp1109I GCAGC 3 cut(s) 198, 1238, 1348
LweI GCATC 6 cut(s) 1038, 1446, 1551, 1607, 1729, 1732
MaeI CTAG 2 cut(s) 221, 783
MaeII ACGT 2 cut(s) 201, 815
MaeIII GTNAC 5 cut(s) 33, 202, 942, 994, 1115
MbiI CCGCTC 3 cut(s) 168, 1143, 1148
MflI RGATCY 2 cut(s) 324, 770
MhlI GDGCHC 2 cut(s) 234, 1284
MluCI AATT 5 cut(s) 366, 1475, 1555, 1607, 1826
Mly113I GGCGCC 1 cut(s) 953
MlyI GAGTC 5 cut(s) 254, 299, 748, 1064, 1641
MmeI TCCRAC 6 cut(s) 241, 411, 510, 855, 1113, 1466
MreI CGCCGGCG 1 cut(s) 52
MroNI GCCGGC 1 cut(s) 52
MseI TTAA 4 cut(s) 330, 1242, 1314, 1449
MspCI CTTAAG 2 cut(s) 1313, 1448
MspR9I CCNGG 6 cut(s) 236, 242, 497, 650, 724, 1766
Mva1269I GAATGC 2 cut(s) 1228, 1364
MvaI CCWGG 4 cut(s) 497, 650, 724, 1766
MvnI CGCG 4 cut(s) 58, 176, 898, 1520
NaeI GCCGGC 1 cut(s) 54
NarI GGCGCC 1 cut(s) 953
NciI CCSGG 2 cut(s) 236, 242
NgoMIV GCCGGC 1 cut(s) 52
NlaIII CATG 5 cut(s) 1123, 1487, 1794, 1799, 1851
NlaIV GGNNCC 6 cut(s) 239, 789, 921, 954, 1078, 1254
NmeAIII GCCGAG 3 cut(s) 738, 772, 828
NmuCI GTSAC 4 cut(s) 202, 942, 994, 1115
NspV TTCGAA 1 cut(s) 683
PceI AGGCCT 1 cut(s) 848
PciSI GCTCTTC 1 cut(s) 1674
PcsI WCGNNNNNNNCGW 4 cut(s) 818, 821, 1131, 1374
PctI GAATGC 2 cut(s) 1228, 1364
PdiI GCCGGC 1 cut(s) 54
PfeI GAWTC 6 cut(s) 655, 680, 777, 1058, 1514, 1546
PflFI GACNNNGTC 2 cut(s) 757, 817
PfoI TCCNGGA 1 cut(s) 234
Ple19I CGATCG 1 cut(s) 950
PleI GAGTC 5 cut(s) 253, 298, 748, 1064, 1640
PluTI GGCGCC 1 cut(s) 956
PpsI GAGTC 5 cut(s) 253, 298, 748, 1064, 1640
Psp124BI GAGCTC 2 cut(s) 234, 1284
Psp6I CCWGG 4 cut(s) 495, 648, 722, 1764
PspFI CCCAGC 1 cut(s) 8
PspGI CCWGG 4 cut(s) 495, 648, 722, 1764
PspN4I GGNNCC 6 cut(s) 239, 789, 921, 954, 1078, 1254
PspPI GGNCC 5 cut(s) 181, 238, 591, 1439, 1667
PstNI CAGNNNCTG 1 cut(s) 571
PsuI RGATCY 2 cut(s) 324, 770
PsyI GACNNNGTC 2 cut(s) 757, 817
PvuI CGATCG 1 cut(s) 950
RsaI GTAC 5 cut(s) 158, 275, 631, 1078, 1800
RsaNI GTAC 5 cut(s) 157, 274, 630, 1077, 1799
SacI GAGCTC 2 cut(s) 234, 1284
SalI GTCGAC 1 cut(s) 811
SapI GCTCTTC 1 cut(s) 1674
SaqAI TTAA 4 cut(s) 330, 1242, 1314, 1449
Sau96I GGNCC 5 cut(s) 181, 238, 591, 1439, 1667
SchI GAGTC 5 cut(s) 254, 299, 748, 1064, 1641
ScrFI CCNGG 6 cut(s) 236, 242, 497, 650, 724, 1766
SduI GDGCHC 2 cut(s) 234, 1284
SfaNI GCATC 6 cut(s) 1038, 1446, 1551, 1607, 1729, 1732
SfoI GGCGCC 1 cut(s) 954
SfuI TTCGAA 1 cut(s) 683
SgrAI CRCCGGYG 1 cut(s) 52
SgrDI CGTCGACG 1 cut(s) 811
SinI GGWCC 4 cut(s) 181, 238, 591, 1439
SmlI CTYRAG 4 cut(s) 377, 1313, 1382, 1448
SmoI CTYRAG 4 cut(s) 377, 1313, 1382, 1448
SpeI ACTAGT 1 cut(s) 220
Sse9I AATT 5 cut(s) 366, 1475, 1555, 1607, 1826
SseBI AGGCCT 1 cut(s) 848
SspDI GGCGCC 1 cut(s) 952
SspMI CTAG 2 cut(s) 221, 783
SstI GAGCTC 2 cut(s) 234, 1284
StuI AGGCCT 1 cut(s) 848
StyD4I CCNGG 6 cut(s) 234, 240, 495, 648, 722, 1764
StyI CCWWGG 1 cut(s) 782
TaaI ACNGT 5 cut(s) 810, 836, 942, 994, 1803
TaiI ACGT 2 cut(s) 204, 818
TaqI TCGA 9 cut(s) 248, 683, 775, 812, 1134, 1218, 1502, 1702, 1740
TaqII GACCGA 1 cut(s) 283
TasI AATT 5 cut(s) 366, 1475, 1555, 1607, 1826
TatI WGTACW 3 cut(s) 156, 273, 1798
TfiI GAWTC 6 cut(s) 655, 680, 777, 1058, 1514, 1546
Tru1I TTAA 4 cut(s) 330, 1242, 1314, 1449
Tru9I TTAA 4 cut(s) 330, 1242, 1314, 1449
TscAI CASTG 3 cut(s) 108, 646, 1808
TseFI GTSAC 4 cut(s) 202, 942, 994, 1115
TseI GCWGC 3 cut(s) 211, 1226, 1361
Tsp45I GTSAC 4 cut(s) 202, 942, 994, 1115
TspDTI ATGAA 6 cut(s) 299, 530, 1183, 1314, 1631, 1640
TspGWI ACGGA 8 cut(s) 221, 275, 574, 647, 1013, 1184, 1591, 1703
TspRI CASTG 3 cut(s) 108, 646, 1808
Tth111I GACNNNGTC 2 cut(s) 757, 817
Vha464I CTTAAG 2 cut(s) 1313, 1448
VpaK11BI GGWCC 4 cut(s) 181, 238, 591, 1439
XapI RAATTY 1 cut(s) 1826
XmaJI CCTAGG 1 cut(s) 782
XmiI GTMKAC 2 cut(s) 761, 812
XspI CTAG 2 cut(s) 221, 783
ZraI GACGTC 1 cut(s) 816
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.