Rh5AG081200

Protein CHUP1, chloroplastic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0012111
Physical Location & Seq
Forward (+)
6950051 .. 6953985
3935 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG081200.1

Sequence Viewer

Length: 1752 bp
ATGGTAGCTGGGAAGGTGAGGGTAGCAATGGGGTTACAGAAATCCCCATCGCCGGCGCGTAGTAGTAAGCCAGAGCCGCCTCCGAAGCCGCCGTCGCCGTCAGTGAGTTCCGGCAAGTCGTCGCAGAAGGCGGTGTTCTCACGCTCCTTTGGCGTGTACTTCCCCCGCTCCTCCGCGCAGGTCCAGCCCAAGCCGCCGGACGTGACGGAGCTGCTCCGACTAGTGGAGGAGCTCCGGGACCGGGAGTCGAGGCTGAAGACGGAGCTTCTGGAGTACAAGCTGCTGAAGGAGTCGGTCGCCATTGTTCCGGTGCTGGAAAACCAGATCTTTAACAAGGACGAGGAGATTGGGAGAGCCAACAGAAAAATTGAAGTGCTTGAAAGCGAGAACAGGAGGTTGAGGAGTGAAGCGGAGTTGGTTAGGGTGGAGTTGGAGGAAGAGAGGAGGGAGAGCGAGAATAAAGTGGAGGAAATGGAGGCGAAAATCAAAGCTATCCAGGCGGAGATTTCGGAGATGAAGAAGGCGGCGTCGGAAAGCGACGAGCTTTCGTCGTCGCAGAGATTTCAGGGACTGATGGAGGTGTCCGTTAGGTCCAATCTGATCAAGAACTTGAAGAAGGGAGTGAAATGTACGGACATCAGTGCAAGCCTGGAGAATCAGCAAAGACTGGAACGCTCGGATTCGAAGAGAGAGGAGGTTGAGATTGAAATGCCGAGACACTCCAGGTGTAACTCGGAGGATTTCGCCGAGCCGACCCTGTCTACTCTCAGATCTCGAATCCCTAGGGTTCCGAAACCGCCGCCGAGACCGTCGTCGTCGTCGTCGTCATCCAACGGTGAAAACAAGGCCTCTACAACAGGAGAGCAAGCCAACATTCCACCTCCGCCTCCGCCGCCGCGACCGGCTCAGGCGAAGGTGGCACCTCCACCGCCGCCTCCACCGTCACGATTGGCGCCGCCTCCTCCACCGCCGCCGCCGAAGGGGAGGAAGACGGTGACGGAGAAGGTGAGGCGAGTGCCGGAGGTTGTGGAGTTTTACCACTCTCTGATGCGGAGGGATTCTCGGAGAGACTCCGGTACCGGAGCTTCCGACGCACCGGCCACCGCCAATGCCCGTGACATGATCGGAGAGATCGAGAACCGCTCTGCTCACTTGCTCGCTATCAAAACGGATGTAGAAACGCAGGGAGATTTCATAAGGTTTTTGATCAAAGAAGTCGAGAATGCAGCGTTTACAGACATTAACGATGTTGTGCCTTTTGTCAAATGGCTGGATGATGAGCTCTCTTATTTGGTGGATGAAAGAGCTGTGCTTAAGCATTTTGACTGGCCGGAGCAGAAGGCTGACGCTCTGCGTGAGGCTGCATTCGGGTATTGCGATCTCAAGAAGCTTGAAACAGAGGCTTCTTTGTTCCCTGACCATTCTCGCCAGCCCTGCGGTCCAACCCTTAAGAAGATGCAGGCTTTGCTTGAAAAATTGGAGCATGGTGTTTACAACCTTTCGAGGATGAGAGAATCCGCGACGAAAAGATACAAAGTTTTCCAGATTCCTACAAATTGGATGCTGGATACTGAGTTTGTAAGCCAGGTAATTCCTTGCCTCTGTCTGTGTTTATGCTTCAGAAACCGAATGGATGAAATTCTTACTCATATTTTCTTACCTTGGATAACAATTCATTCTACAAGAGCATTGAATTCATTTCGGCCACACCCCATCACTCACAAAGTCATCACCGTTGGTTTATTGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

583

Amino Acids

65.75

Weight (kDa)

8.71

Isoelectric Point (pI)

65.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18570 AT4G18570
fragaria_vesca FvH4_3g08000
malus_domestica MD05G1303500.v1.1 MD10G1282700.v1.1
prunus_persica Prupe.4G059200_v2.0.a1
pyrus_communis pycom05g28050 pycom10g23580
rosa_chinensis RchiOBHm_Chr5g0010311
rosa_laevigata RLG00000031736
rosa_multiflora Rmu_co8025906.1_g000001 Rmu_sc0012578.1_g000002
rosa_roxburghii Rroxscaffold_1G00065940
rosa_rugosa Rorug04G0450100
rosa_samantha Rh5AG081200 Rh5BG076100 Rh5CG089400 Rh5DG076800
rosa_wichuraiana Rw5G007520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 169
Acc65I GGTACC 1 cut(s) 1076
AccB1I GGYRCC 3 cut(s) 919, 952, 1076
AccBSI CCGCTC 2 cut(s) 168, 1143
AccI GTMKAC 1 cut(s) 761
AccII CGCG 4 cut(s) 58, 176, 898, 1520
AcoI YGGCCR 3 cut(s) 1098, 1328, 1703
AcsI RAATTY 2 cut(s) 1638, 1693
AcuI CTGAAG 3 cut(s) 275, 305, 1603
AcyI GRCGYC 2 cut(s) 527, 953
AfaI GTAC 4 cut(s) 158, 275, 631, 1078
AfiI CCNNNNNNNGG 4 cut(s) 52, 223, 241, 980
AflII CTTAAG 2 cut(s) 1313, 1448
AgsI TTSAA 7 cut(s) 371, 380, 613, 707, 1394, 1472, 1693
AhdI GACNNNNNGTC 1 cut(s) 244
AhlI ACTAGT 1 cut(s) 220
AjiI CACGTC 1 cut(s) 202
AjnI CCWGG 4 cut(s) 495, 648, 722, 1584
Alw21I GWGCWC 2 cut(s) 234, 1284
Alw26I GTCTC 3 cut(s) 709, 799, 1062
AlwNI CAGNNNCTG 1 cut(s) 571
AoxI GGCC 4 cut(s) 846, 1098, 1328, 1703
ApeKI GCWGC 4 cut(s) 211, 280, 1226, 1361
ApoI RAATTY 2 cut(s) 1638, 1693
ArsI GACNNNNNNTTYG 2 cut(s) 77, 109
Asp718I GGTACC 1 cut(s) 1076
AspA2I CCTAGG 1 cut(s) 782
AspLEI GCGC 3 cut(s) 58, 178, 955
AspS9I GGNCC 4 cut(s) 181, 238, 591, 1439
AsuC2I CCSGG 2 cut(s) 236, 242
AsuHPI GGTGA 5 cut(s) 28, 848, 1006, 1018, 1723
AsuII TTCGAA 1 cut(s) 683
AvaII GGWCC 4 cut(s) 181, 238, 591, 1439
AvrII CCTAGG 1 cut(s) 782
BaeI ACNNNNGTAYC 2 cut(s) 1060, 1093
BanI GGYRCC 3 cut(s) 919, 952, 1076
BanII GRGCYC 2 cut(s) 234, 1284
BarI GAAGNNNNNNTAC 2 cut(s) 1069, 1101
BbsI GAAGAC 2 cut(s) 263, 995
Bbv12I GWGCWC 2 cut(s) 234, 1284
BbvI GCAGC 4 cut(s) 198, 267, 1238, 1348
BccI CCATC 3 cut(s) 55, 568, 1721
BceAI ACGGC 2 cut(s) 76, 82
BciT130I CCWGG 4 cut(s) 497, 650, 724, 1586
BciVI GTATCC 1 cut(s) 1561
BclI TGATCA 2 cut(s) 600, 1206
BcnI CCSGG 2 cut(s) 236, 242
BcoDI GTCTC 3 cut(s) 709, 799, 1062
BcuI ACTAGT 1 cut(s) 220
BfaI CTAG 2 cut(s) 221, 783
BfoI RGCGCY 1 cut(s) 956
BfrI CTTAAG 2 cut(s) 1313, 1448
BfuAI ACCTGC 1 cut(s) 169
BfuI GTATCC 1 cut(s) 1561
BglII AGATCT 2 cut(s) 324, 770
BlnI CCTAGG 1 cut(s) 782
Bme1390I CCNGG 6 cut(s) 236, 242, 497, 650, 724, 1586
Bme18I GGWCC 4 cut(s) 181, 238, 591, 1439
BmeRI GACNNNNNGTC 1 cut(s) 244
BmgBI CACGTC 1 cut(s) 202
BmgT120I GGNCC 4 cut(s) 181, 238, 591, 1439
BmiI GGNNCC 5 cut(s) 239, 789, 921, 954, 1078
BmrFI CCNGG 6 cut(s) 236, 242, 497, 650, 724, 1586
BmsI GCATC 3 cut(s) 1038, 1446, 1551
BoxI GACNNNNGTC 1 cut(s) 811
BpiI GAAGAC 2 cut(s) 263, 995
BplI GAGNNNNNCTC 4 cut(s) 1045, 1077, 1127, 1159
BpmI CTGGAG 3 cut(s) 290, 671, 706
Bpu10I CCTNAGC 1 cut(s) 906
Bpu14I TTCGAA 1 cut(s) 683
BpuEI CTTGAG 1 cut(s) 1367
BpuMI CCSGG 2 cut(s) 236, 242
BsaHI GRCGYC 2 cut(s) 527, 953
BsaI GGTCTC 1 cut(s) 799
BsaJI CCNNGG 2 cut(s) 782, 1661
BsaWI WCCGGW 3 cut(s) 307, 1073, 1079
Bsc4I CCNNNNNNNGG 4 cut(s) 52, 223, 241, 980
Bse118I RCCGGY 3 cut(s) 52, 901, 1096
Bse1I ACTGG 2 cut(s) 672, 1331
Bse3DI GCAATG 1 cut(s) 33
BseBI CCWGG 4 cut(s) 497, 650, 724, 1586
BseDI CCNNGG 2 cut(s) 782, 1661
BseGI GGATG 7 cut(s) 827, 1177, 1279, 1303, 1512, 1566, 1639
BseLI CCNNNNNNNGG 4 cut(s) 52, 223, 241, 980
BseMI GCAATG 1 cut(s) 33
BseMII CTCAG 3 cut(s) 781, 920, 1563
BseNI ACTGG 2 cut(s) 672, 1331
BseRI GAGGAG 7 cut(s) 160, 242, 356, 415, 457, 707, 951
BseXI GCAGC 4 cut(s) 198, 267, 1238, 1348
BseYI CCCAGC 1 cut(s) 8
Bsh1236I CGCG 4 cut(s) 58, 176, 898, 1520
Bsh1285I CGRYCG 2 cut(s) 297, 902
BshFI GGCC 4 cut(s) 848, 1100, 1330, 1705
BshNI GGYRCC 3 cut(s) 919, 952, 1076
BsiEI CGRYCG 2 cut(s) 297, 902
BsiHKAI GWGCWC 2 cut(s) 234, 1284
BslFI GGGAC 2 cut(s) 251, 582
BslI CCNNNNNNNGG 4 cut(s) 52, 223, 241, 980
BsmAI GTCTC 3 cut(s) 709, 799, 1062
BsmFI GGGAC 2 cut(s) 251, 582
BsmI GAATGC 2 cut(s) 1228, 1364
BsnI GGCC 4 cut(s) 848, 1100, 1330, 1705
Bso31I GGTCTC 1 cut(s) 799
Bsp119I TTCGAA 1 cut(s) 683
Bsp1286I GDGCHC 2 cut(s) 234, 1284
Bsp143I GATC 7 cut(s) 324, 600, 770, 1122, 1131, 1206, 1378
BspANI GGCC 4 cut(s) 848, 1100, 1330, 1705
BspCNI CTCAG 3 cut(s) 780, 919, 1564
BspFNI CGCG 4 cut(s) 58, 176, 898, 1520
BspLI GGNNCC 5 cut(s) 239, 789, 921, 954, 1078
BspMI ACCTGC 1 cut(s) 169
BspT104I TTCGAA 1 cut(s) 683
BspT107I GGYRCC 3 cut(s) 919, 952, 1076
BspTI CTTAAG 2 cut(s) 1313, 1448
BspTNI GGTCTC 1 cut(s) 799
BsrBI CCGCTC 2 cut(s) 168, 1143
BsrDI GCAATG 1 cut(s) 33
BsrFI RCCGGY 3 cut(s) 52, 901, 1096
BsrI ACTGG 2 cut(s) 672, 1331
BssAI RCCGGY 3 cut(s) 52, 901, 1096
BssECI CCNNGG 2 cut(s) 782, 1661
BssMI GATC 7 cut(s) 324, 600, 770, 1122, 1131, 1206, 1378
BssNI GRCGYC 2 cut(s) 527, 953
BssT1I CCWWGG 2 cut(s) 782, 1661
Bst2UI CCWGG 4 cut(s) 497, 650, 724, 1586
Bst4CI ACNGT 5 cut(s) 810, 836, 942, 994, 1735
Bst6I CTCTTC 2 cut(s) 432, 680
BstACI GRCGYC 2 cut(s) 527, 953
BstAFI CTTAAG 2 cut(s) 1313, 1448
BstAPI GCANNNNNTGC 1 cut(s) 1465
BstBI TTCGAA 1 cut(s) 683
BstC8I GCNNGC 6 cut(s) 54, 646, 867, 1158, 1430, 1461
BstDEI CTNAG 3 cut(s) 767, 906, 1572
BstF5I GGATG 7 cut(s) 827, 1177, 1279, 1303, 1512, 1566, 1639
BstFNI CGCG 4 cut(s) 58, 176, 898, 1520
BstH2I RGCGCY 1 cut(s) 956
BstHHI GCGC 3 cut(s) 58, 178, 955
BstKTI GATC 7 cut(s) 327, 603, 773, 1125, 1134, 1209, 1381
BstMAI GTCTC 3 cut(s) 709, 799, 1062
BstMBI GATC 7 cut(s) 324, 600, 770, 1122, 1131, 1206, 1378
BstMCI CGRYCG 2 cut(s) 297, 902
BstNI CCWGG 4 cut(s) 497, 650, 724, 1586
BstPAI GACNNNNGTC 1 cut(s) 811
BstSCI CCNGG 6 cut(s) 234, 240, 495, 648, 722, 1584
BstUI CGCG 4 cut(s) 58, 176, 898, 1520
BstV1I GCAGC 4 cut(s) 198, 267, 1238, 1348
BstV2I GAAGAC 2 cut(s) 263, 995
BstX2I RGATCY 2 cut(s) 324, 770
BstYI RGATCY 2 cut(s) 324, 770
BsuI GTATCC 1 cut(s) 1561
BsuRI GGCC 4 cut(s) 848, 1100, 1330, 1705
BtgZI GCGATG 1 cut(s) 33
BtrI CACGTC 1 cut(s) 202
BtsCI GGATG 7 cut(s) 827, 1177, 1279, 1303, 1512, 1566, 1639
BtsIMutI CAGTG 2 cut(s) 108, 646
BveI ACCTGC 1 cut(s) 169
Cac8I GCNNGC 6 cut(s) 54, 646, 867, 1158, 1430, 1461
CaiI CAGNNNCTG 1 cut(s) 571
CfoI GCGC 3 cut(s) 58, 178, 955
Cfr10I RCCGGY 3 cut(s) 52, 901, 1096
Cfr13I GGNCC 4 cut(s) 181, 238, 591, 1439
CseI GACGC 3 cut(s) 516, 1100, 1355
Csp6I GTAC 4 cut(s) 157, 274, 630, 1077
CviAII CATG 2 cut(s) 1120, 1484
CviQI GTAC 4 cut(s) 157, 274, 630, 1077
DdeI CTNAG 3 cut(s) 767, 906, 1572
DinI GGCGCC 1 cut(s) 954
DpnI GATC 7 cut(s) 326, 602, 772, 1124, 1133, 1208, 1380
DpnII GATC 7 cut(s) 324, 600, 770, 1122, 1131, 1206, 1378
DriI GACNNNNNGTC 1 cut(s) 244
EaeI YGGCCR 3 cut(s) 1098, 1328, 1703
Eam1104I CTCTTC 2 cut(s) 432, 680
Eam1105I GACNNNNNGTC 1 cut(s) 244
EarI CTCTTC 2 cut(s) 432, 680
EciI GGCGGA 3 cut(s) 515, 873, 879
Ecl136II GAGCTC 2 cut(s) 232, 1282
Eco130I CCWWGG 2 cut(s) 782, 1661
Eco147I AGGCCT 1 cut(s) 848
Eco24I GRGCYC 2 cut(s) 234, 1284
Eco31I GGTCTC 1 cut(s) 799
Eco47I GGWCC 4 cut(s) 181, 238, 591, 1439
Eco53kI GAGCTC 2 cut(s) 232, 1282
Eco57I CTGAAG 3 cut(s) 275, 305, 1603
EcoICRI GAGCTC 2 cut(s) 232, 1282
EcoRI GAATTC 1 cut(s) 1693
EcoRII CCWGG 4 cut(s) 495, 648, 722, 1584
EcoT14I CCWWGG 2 cut(s) 782, 1661
EcoT38I GRGCYC 2 cut(s) 234, 1284
EgeI GGCGCC 1 cut(s) 954
EheI GGCGCC 1 cut(s) 954
ErhI CCWWGG 2 cut(s) 782, 1661
FaeI CATG 2 cut(s) 1123, 1487
FaiI YATR 5 cut(s) 1121, 1196, 1485, 1615, 1650
FaqI GGGAC 2 cut(s) 251, 582
FatI CATG 2 cut(s) 1119, 1483
FauI CCCGC 1 cut(s) 173
FbaI TGATCA 2 cut(s) 600, 1206
FblI GTMKAC 1 cut(s) 761
FokI GGATG 7 cut(s) 814, 1184, 1286, 1310, 1519, 1573, 1646
FriOI GRGCYC 2 cut(s) 234, 1284
FspBI CTAG 2 cut(s) 221, 783
GlaI GCGC 3 cut(s) 57, 177, 954
GsaI CCCAGC 1 cut(s) 12
GsuI CTGGAG 3 cut(s) 290, 671, 706
HaeII RGCGCY 1 cut(s) 956
HaeIII GGCC 4 cut(s) 848, 1100, 1330, 1705
HgaI GACGC 3 cut(s) 516, 1100, 1355
HhaI GCGC 3 cut(s) 58, 178, 955
Hin1I GRCGYC 2 cut(s) 527, 953
Hin1II CATG 2 cut(s) 1123, 1487
Hin6I GCGC 3 cut(s) 56, 176, 953
HinP1I GCGC 3 cut(s) 56, 176, 953
HindIII AAGCTT 1 cut(s) 1388
HinfI GANTC 9 cut(s) 245, 290, 655, 680, 777, 1058, 1070, 1514, 1546
HphI GGTGA 5 cut(s) 28, 848, 1006, 1018, 1723
Hpy166II GTNNAC 4 cut(s) 157, 762, 1233, 1492
Hpy188III TCNNGA 8 cut(s) 269, 604, 774, 945, 1135, 1219, 1384, 1543
Hpy8I GTNNAC 4 cut(s) 157, 762, 1233, 1492
HpyAV CCTTC 9 cut(s) 7, 121, 280, 514, 610, 907, 973, 997, 1333
HpyCH4III ACNGT 5 cut(s) 810, 836, 942, 994, 1735
HpyCH4IV ACGT 1 cut(s) 201
HpyCH4V TGCA 4 cut(s) 644, 1226, 1364, 1459
HpyF3I CTNAG 3 cut(s) 767, 906, 1572
HpySE526I ACGT 1 cut(s) 201
Hsp92I GRCGYC 2 cut(s) 527, 953
Hsp92II CATG 2 cut(s) 1123, 1487
HspAI GCGC 3 cut(s) 56, 176, 953
KasI GGCGCC 1 cut(s) 952
KpnI GGTACC 1 cut(s) 1080
KroI GCCGGC 1 cut(s) 52
KroNI GCCGGC 1 cut(s) 54
Ksp22I TGATCA 2 cut(s) 600, 1206
Kzo9I GATC 7 cut(s) 324, 600, 770, 1122, 1131, 1206, 1378
Lsp1109I GCAGC 4 cut(s) 198, 267, 1238, 1348
LweI GCATC 3 cut(s) 1038, 1446, 1551
MaeI CTAG 2 cut(s) 221, 783
MaeII ACGT 1 cut(s) 201
MaeIII GTNAC 6 cut(s) 33, 202, 728, 942, 994, 1115
MalI GATC 7 cut(s) 326, 602, 772, 1124, 1133, 1208, 1380
MbiI CCGCTC 2 cut(s) 168, 1143
MboI GATC 7 cut(s) 324, 600, 770, 1122, 1131, 1206, 1378
MboII GAAGA 7 cut(s) 268, 449, 529, 625, 697, 1000, 1465
MflI RGATCY 2 cut(s) 324, 770
MhlI GDGCHC 2 cut(s) 234, 1284
MluCI AATT 7 cut(s) 366, 1475, 1555, 1590, 1638, 1671, 1693
Mly113I GGCGCC 1 cut(s) 953
MlyI GAGTC 3 cut(s) 254, 299, 1064
MmeI TCCRAC 6 cut(s) 241, 411, 510, 855, 1113, 1466
MreI CGCCGGCG 1 cut(s) 52
MroNI GCCGGC 1 cut(s) 52
MseI TTAA 4 cut(s) 330, 1242, 1314, 1449
MspCI CTTAAG 2 cut(s) 1313, 1448
MspR9I CCNGG 6 cut(s) 236, 242, 497, 650, 724, 1586
Mva1269I GAATGC 2 cut(s) 1228, 1364
MvaI CCWGG 4 cut(s) 497, 650, 724, 1586
MvnI CGCG 4 cut(s) 58, 176, 898, 1520
NaeI GCCGGC 1 cut(s) 54
NarI GGCGCC 1 cut(s) 953
NciI CCSGG 2 cut(s) 236, 242
NdeII GATC 7 cut(s) 324, 600, 770, 1122, 1131, 1206, 1378
NgoMIV GCCGGC 1 cut(s) 52
NlaIII CATG 2 cut(s) 1123, 1487
NlaIV GGNNCC 5 cut(s) 239, 789, 921, 954, 1078
NmeAIII GCCGAG 3 cut(s) 738, 772, 828
NmuCI GTSAC 4 cut(s) 202, 942, 994, 1115
NspV TTCGAA 1 cut(s) 683
PceI AGGCCT 1 cut(s) 848
PcsI WCGNNNNNNNCGW 4 cut(s) 818, 821, 1131, 1374
PctI GAATGC 2 cut(s) 1228, 1364
PdiI GCCGGC 1 cut(s) 54
PfeI GAWTC 6 cut(s) 655, 680, 777, 1058, 1514, 1546
PflFI GACNNNGTC 1 cut(s) 757
PfoI TCCNGGA 1 cut(s) 234
PleI GAGTC 3 cut(s) 253, 298, 1064
PluTI GGCGCC 1 cut(s) 956
PpsI GAGTC 3 cut(s) 253, 298, 1064
PshAI GACNNNNGTC 1 cut(s) 811
Psp124BI GAGCTC 2 cut(s) 234, 1284
Psp6I CCWGG 4 cut(s) 495, 648, 722, 1584
PspFI CCCAGC 1 cut(s) 8
PspGI CCWGG 4 cut(s) 495, 648, 722, 1584
PspN4I GGNNCC 5 cut(s) 239, 789, 921, 954, 1078
PspPI GGNCC 4 cut(s) 181, 238, 591, 1439
PstNI CAGNNNCTG 1 cut(s) 571
PsuI RGATCY 2 cut(s) 324, 770
PsyI GACNNNGTC 1 cut(s) 757
RsaI GTAC 4 cut(s) 158, 275, 631, 1078
RsaNI GTAC 4 cut(s) 157, 274, 630, 1077
SacI GAGCTC 2 cut(s) 234, 1284
SaqAI TTAA 4 cut(s) 330, 1242, 1314, 1449
Sau3AI GATC 7 cut(s) 324, 600, 770, 1122, 1131, 1206, 1378
Sau96I GGNCC 4 cut(s) 181, 238, 591, 1439
SchI GAGTC 3 cut(s) 254, 299, 1064
ScrFI CCNGG 6 cut(s) 236, 242, 497, 650, 724, 1586
SduI GDGCHC 2 cut(s) 234, 1284
SfaNI GCATC 3 cut(s) 1038, 1446, 1551
SfoI GGCGCC 1 cut(s) 954
SfuI TTCGAA 1 cut(s) 683
SgrAI CRCCGGYG 1 cut(s) 52
SinI GGWCC 4 cut(s) 181, 238, 591, 1439
SmlI CTYRAG 3 cut(s) 1313, 1382, 1448
SmoI CTYRAG 3 cut(s) 1313, 1382, 1448
SpeI ACTAGT 1 cut(s) 220
Sse9I AATT 7 cut(s) 366, 1475, 1555, 1590, 1638, 1671, 1693
SseBI AGGCCT 1 cut(s) 848
SspDI GGCGCC 1 cut(s) 952
SspMI CTAG 2 cut(s) 221, 783
SstI GAGCTC 2 cut(s) 234, 1284
StuI AGGCCT 1 cut(s) 848
StyD4I CCNGG 6 cut(s) 234, 240, 495, 648, 722, 1584
StyI CCWWGG 2 cut(s) 782, 1661
TaaI ACNGT 5 cut(s) 810, 836, 942, 994, 1735
TaiI ACGT 1 cut(s) 204
TaqI TCGA 6 cut(s) 248, 683, 775, 1134, 1218, 1502
TaqII GACCGA 1 cut(s) 283
TasI AATT 7 cut(s) 366, 1475, 1555, 1590, 1638, 1671, 1693
TatI WGTACW 2 cut(s) 156, 273
TfiI GAWTC 6 cut(s) 655, 680, 777, 1058, 1514, 1546
Tru1I TTAA 4 cut(s) 330, 1242, 1314, 1449
Tru9I TTAA 4 cut(s) 330, 1242, 1314, 1449
TscAI CASTG 2 cut(s) 108, 646
TseFI GTSAC 4 cut(s) 202, 942, 994, 1115
TseI GCWGC 4 cut(s) 211, 280, 1226, 1361
Tsp45I GTSAC 4 cut(s) 202, 942, 994, 1115
TspDTI ATGAA 6 cut(s) 530, 1183, 1314, 1650, 1664, 1686
TspGWI ACGGA 6 cut(s) 221, 275, 574, 647, 1013, 1184
TspRI CASTG 2 cut(s) 108, 646
Tth111I GACNNNGTC 1 cut(s) 757
Vha464I CTTAAG 2 cut(s) 1313, 1448
VpaK11BI GGWCC 4 cut(s) 181, 238, 591, 1439
XapI RAATTY 2 cut(s) 1638, 1693
XmaJI CCTAGG 1 cut(s) 782
XmiI GTMKAC 1 cut(s) 761
XspI CTAG 2 cut(s) 221, 783
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.