Rh5CG089400

Protein CHUP1, chloroplastic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0012111
Physical Location & Seq
Forward (+)
6998434 .. 7004082
5649 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG089400.1

Sequence Viewer

Length: 1749 bp
ATGGTAGCTGGGAAGGTGAGGGTAGCAATGGGGTTACAGAAATCCCCATCGCCGGCGCGTAGTAGTAAGCCAGAGCCGCCTCCGAAGCCGCCGTCGCCGTCAGTGAGCTCCGGCAAGTCGTCGCAGAAGGCGGTGTTCTCACGCTCCTTTGGCGTGTACTTCCCCCGCTCCTCCGCGCAGGTCCAGCCCAAGCCGCCGGACGTGACGGAGCTGCTCCGACTAGTGGAGGAGCTCCGGGACCGGGAGTCGAGGCTGAAGACGGAGCTTCTGGAGTACAAGCTGCTGAAGGAGTCGGTCGCCATTGTTCCGGTGCTGGAAAACCAGATCTTTAACAAGGACGAGGAGATTGGGAGAGCCACCAGAAAAATTGAAGTGCTTGAAAGCGAGAACAGGAGGTTGAGGAGTGAAGCGGAGTTGGTTAGGGTGGAGTTGGAGGAAGAGAGGAGGGAGAGCGAGAAGAAAGTGGAGGAAATGGAGGCGAAAATCAAAGCTATCCAGGCGGAGATTTCGGAGATGAAGAAGGCGGCGTCGGAAAGCGACGAGCTTTCGTCGTCGCAGAGATTTCAGGGACTGATGGAGGTGTCCGTTAGGTCCAATCTGATCAAGAACTTGAAGAAGGGAGTGAAATGTACGGACATCAGTGCAAGCCTGGAGAATCAGCAAAGACTGGAACGCTCGGATTCGAAGAGAGAGGAAGTTGAGATTGAAATGCCGAGACACTCCAGGTGTAACTCGGAGGATTTCGCCGAGCCGACTCTGTCTACTCTCAGATCTCGAATCCCTAGGGTTCCGAAACCGCCGCCGAGACCGTCGTCGTCGTCGTCATCCAACGGTGAAAACAAGGCCTCTACAACAGGAGAGCAAGCCAACATTCCACCTCCGCCTCCGCCGCCGCGACCGGCTCAGGCGAATGTGGCACCTCCACCGCCGCCTCCACCGTCACGATCGGCGCCGCCTCCTCCACCGCCGCCGCCGAAGGGGAGGAAGACGGTGACGGAGAAGGTGAGGCGAGTGCCGGAGGTTGTGGAGTTTTACCACTCTCTGATGCGGAGGGATTCTCGGAGAGACTCCGGTACGGGAGCTTCCGACGCACCGGCCACCGCCAATGCCCGTGACATGATCGGAGAGATCGAGAACCGCTCTGCTCACTTGCTCGCTATCAAAACGGATGTAGAAACGCAGGGAGATTTCATAAGGTTTTTGATCAAAGAAGTCGAGAATGCGGCGTTTACAGACATTAACGATGTGGTGCCTTTTGTCAAATGGCTGGATGATGAGCTCTCTTATTTGGTGGATGAAAGAGCTGTGCTTAAGCATTTTGACTGGCCGGAGCAGAAGGCTGACGCTCTGCGTGAGGCTGCATTCGGGTATTGCGATCTCAAGAAGCTTGAAACAGAGGCTTCTTCGTTCCCTGACCATTCTCGCCAGCCCTGCGGTCCAACCCTTAAAAAGATGCAGGCTTTGCTTGAAAAATTGGAGCATGGTGTTTACAACCTTTCGAGGATGAGAGAATCCGCGACGAAAAGATACAAAGTTTTCCAGATTCCTACAAATTGGATGCTGGATACTGAGTTTGTAAGCCAGGTAATTCCTTGCCTCTGTCTGTGTTTATGCTTCAGAAACCGAATGGATGAAATTTTTACTCATATTTTCTTACCTTGGATAACAATTCATTCTACAAGAGCATTGAATTCATTTCGGCCACACCCCATCACTCACAAAGTCATCACCTTTGGTTTATTGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

582

Amino Acids

65.68

Weight (kDa)

8.71

Isoelectric Point (pI)

66.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18570 AT4G18570
fragaria_vesca FvH4_3g08000
malus_domestica MD05G1303500.v1.1 MD10G1282700.v1.1
prunus_persica Prupe.4G059200_v2.0.a1
pyrus_communis pycom05g28050 pycom10g23580
rosa_chinensis RchiOBHm_Chr5g0010311
rosa_laevigata RLG00000031736
rosa_multiflora Rmu_co8025906.1_g000001 Rmu_sc0012578.1_g000002
rosa_roxburghii Rroxscaffold_1G00065940
rosa_rugosa Rorug04G0450100
rosa_samantha Rh5AG081200 Rh5BG076100 Rh5CG089400 Rh5DG076800
rosa_wichuraiana Rw5G007520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 169
AccB1I GGYRCC 3 cut(s) 916, 949, 1249
AccBSI CCGCTC 2 cut(s) 168, 1140
AccI GTMKAC 1 cut(s) 761
AccII CGCG 4 cut(s) 58, 176, 895, 1517
AcoI YGGCCR 3 cut(s) 1095, 1325, 1700
AcsI RAATTY 2 cut(s) 1635, 1690
AcuI CTGAAG 3 cut(s) 275, 305, 1600
AcyI GRCGYC 2 cut(s) 527, 950
AfaI GTAC 4 cut(s) 158, 275, 631, 1075
AfiI CCNNNNNNNGG 4 cut(s) 52, 223, 241, 977
AflII CTTAAG 1 cut(s) 1310
AgsI TTSAA 7 cut(s) 371, 380, 613, 707, 1391, 1469, 1690
AhdI GACNNNNNGTC 1 cut(s) 244
AhlI ACTAGT 1 cut(s) 220
AjiI CACGTC 1 cut(s) 202
AjnI CCWGG 4 cut(s) 495, 648, 722, 1581
Alw21I GWGCWC 3 cut(s) 110, 234, 1281
Alw26I GTCTC 3 cut(s) 709, 799, 1059
AlwNI CAGNNNCTG 1 cut(s) 571
AoxI GGCC 4 cut(s) 843, 1095, 1325, 1700
ApeKI GCWGC 3 cut(s) 211, 280, 1358
ApoI RAATTY 2 cut(s) 1635, 1690
ArsI GACNNNNNNTTYG 2 cut(s) 77, 109
AspA2I CCTAGG 1 cut(s) 782
AspLEI GCGC 3 cut(s) 58, 178, 952
AspS9I GGNCC 4 cut(s) 181, 238, 591, 1436
AsuC2I CCSGG 2 cut(s) 236, 242
AsuHPI GGTGA 5 cut(s) 28, 845, 1003, 1015, 1720
AsuII TTCGAA 1 cut(s) 683
AvaII GGWCC 4 cut(s) 181, 238, 591, 1436
AvrII CCTAGG 1 cut(s) 782
BanI GGYRCC 3 cut(s) 916, 949, 1249
BanII GRGCYC 3 cut(s) 110, 234, 1281
BarI GAAGNNNNNNTAC 2 cut(s) 1066, 1098
BbsI GAAGAC 2 cut(s) 263, 992
Bbv12I GWGCWC 3 cut(s) 110, 234, 1281
BbvI GCAGC 3 cut(s) 198, 267, 1345
BccI CCATC 3 cut(s) 55, 568, 1718
BceAI ACGGC 2 cut(s) 76, 82
BciT130I CCWGG 4 cut(s) 497, 650, 724, 1583
BciVI GTATCC 1 cut(s) 1558
BclI TGATCA 2 cut(s) 600, 1203
BcnI CCSGG 2 cut(s) 236, 242
BcoDI GTCTC 3 cut(s) 709, 799, 1059
BcuI ACTAGT 1 cut(s) 220
BfaI CTAG 2 cut(s) 221, 783
BfoI RGCGCY 1 cut(s) 953
BfrI CTTAAG 1 cut(s) 1310
BfuAI ACCTGC 1 cut(s) 169
BfuI GTATCC 1 cut(s) 1558
BglII AGATCT 2 cut(s) 324, 770
BlnI CCTAGG 1 cut(s) 782
Bme1390I CCNGG 6 cut(s) 236, 242, 497, 650, 724, 1583
Bme18I GGWCC 4 cut(s) 181, 238, 591, 1436
BmeRI GACNNNNNGTC 1 cut(s) 244
BmgBI CACGTC 1 cut(s) 202
BmgT120I GGNCC 4 cut(s) 181, 238, 591, 1436
BmiI GGNNCC 5 cut(s) 239, 789, 918, 951, 1251
BmrFI CCNGG 6 cut(s) 236, 242, 497, 650, 724, 1583
BmsI GCATC 3 cut(s) 1035, 1443, 1548
BoxI GACNNNNGTC 1 cut(s) 811
BpiI GAAGAC 2 cut(s) 263, 992
BplI GAGNNNNNCTC 4 cut(s) 1042, 1074, 1124, 1156
BpmI CTGGAG 3 cut(s) 290, 671, 706
Bpu10I CCTNAGC 1 cut(s) 903
Bpu14I TTCGAA 1 cut(s) 683
BpuEI CTTGAG 1 cut(s) 1364
BpuMI CCSGG 2 cut(s) 236, 242
BsaHI GRCGYC 2 cut(s) 527, 950
BsaI GGTCTC 1 cut(s) 799
BsaJI CCNNGG 2 cut(s) 782, 1658
BsaWI WCCGGW 2 cut(s) 307, 1070
Bsc4I CCNNNNNNNGG 4 cut(s) 52, 223, 241, 977
Bse118I RCCGGY 3 cut(s) 52, 898, 1093
Bse1I ACTGG 2 cut(s) 672, 1328
Bse3DI GCAATG 1 cut(s) 33
BseBI CCWGG 4 cut(s) 497, 650, 724, 1583
BseDI CCNNGG 2 cut(s) 782, 1658
BseGI GGATG 7 cut(s) 824, 1174, 1276, 1300, 1509, 1563, 1636
BseLI CCNNNNNNNGG 4 cut(s) 52, 223, 241, 977
BseMI GCAATG 1 cut(s) 33
BseMII CTCAG 3 cut(s) 781, 917, 1560
BseNI ACTGG 2 cut(s) 672, 1328
BseRI GAGGAG 6 cut(s) 160, 242, 356, 415, 457, 948
BseXI GCAGC 3 cut(s) 198, 267, 1345
BseYI CCCAGC 1 cut(s) 8
Bsh1236I CGCG 4 cut(s) 58, 176, 895, 1517
Bsh1285I CGRYCG 3 cut(s) 297, 899, 947
BshFI GGCC 4 cut(s) 845, 1097, 1327, 1702
BshNI GGYRCC 3 cut(s) 916, 949, 1249
BsiEI CGRYCG 3 cut(s) 297, 899, 947
BsiHKAI GWGCWC 3 cut(s) 110, 234, 1281
BslFI GGGAC 2 cut(s) 251, 582
BslI CCNNNNNNNGG 4 cut(s) 52, 223, 241, 977
BsmAI GTCTC 3 cut(s) 709, 799, 1059
BsmFI GGGAC 2 cut(s) 251, 582
BsmI GAATGC 2 cut(s) 1225, 1361
BsnI GGCC 4 cut(s) 845, 1097, 1327, 1702
Bso31I GGTCTC 1 cut(s) 799
Bsp119I TTCGAA 1 cut(s) 683
Bsp1286I GDGCHC 3 cut(s) 110, 234, 1281
Bsp143I GATC 8 cut(s) 324, 600, 770, 944, 1119, 1128, 1203, 1375
BspANI GGCC 4 cut(s) 845, 1097, 1327, 1702
BspCNI CTCAG 3 cut(s) 780, 916, 1561
BspFNI CGCG 4 cut(s) 58, 176, 895, 1517
BspLI GGNNCC 5 cut(s) 239, 789, 918, 951, 1251
BspMI ACCTGC 1 cut(s) 169
BspT104I TTCGAA 1 cut(s) 683
BspT107I GGYRCC 3 cut(s) 916, 949, 1249
BspTI CTTAAG 1 cut(s) 1310
BspTNI GGTCTC 1 cut(s) 799
BsrBI CCGCTC 2 cut(s) 168, 1140
BsrDI GCAATG 1 cut(s) 33
BsrFI RCCGGY 3 cut(s) 52, 898, 1093
BsrI ACTGG 2 cut(s) 672, 1328
BssAI RCCGGY 3 cut(s) 52, 898, 1093
BssECI CCNNGG 2 cut(s) 782, 1658
BssMI GATC 8 cut(s) 324, 600, 770, 944, 1119, 1128, 1203, 1375
BssNI GRCGYC 2 cut(s) 527, 950
BssT1I CCWWGG 2 cut(s) 782, 1658
Bst2UI CCWGG 4 cut(s) 497, 650, 724, 1583
Bst4CI ACNGT 4 cut(s) 810, 833, 939, 991
Bst6I CTCTTC 2 cut(s) 432, 680
BstACI GRCGYC 2 cut(s) 527, 950
BstAFI CTTAAG 1 cut(s) 1310
BstAPI GCANNNNNTGC 1 cut(s) 1462
BstBI TTCGAA 1 cut(s) 683
BstC8I GCNNGC 6 cut(s) 54, 646, 864, 1155, 1427, 1458
BstDEI CTNAG 3 cut(s) 767, 903, 1569
BstF5I GGATG 7 cut(s) 824, 1174, 1276, 1300, 1509, 1563, 1636
BstFNI CGCG 4 cut(s) 58, 176, 895, 1517
BstH2I RGCGCY 1 cut(s) 953
BstHHI GCGC 3 cut(s) 58, 178, 952
BstKTI GATC 8 cut(s) 327, 603, 773, 947, 1122, 1131, 1206, 1378
BstMAI GTCTC 3 cut(s) 709, 799, 1059
BstMBI GATC 8 cut(s) 324, 600, 770, 944, 1119, 1128, 1203, 1375
BstMCI CGRYCG 3 cut(s) 297, 899, 947
BstNI CCWGG 4 cut(s) 497, 650, 724, 1583
BstPAI GACNNNNGTC 1 cut(s) 811
BstSCI CCNGG 6 cut(s) 234, 240, 495, 648, 722, 1581
BstUI CGCG 4 cut(s) 58, 176, 895, 1517
BstV1I GCAGC 3 cut(s) 198, 267, 1345
BstV2I GAAGAC 2 cut(s) 263, 992
BstX2I RGATCY 2 cut(s) 324, 770
BstYI RGATCY 2 cut(s) 324, 770
BsuI GTATCC 1 cut(s) 1558
BsuRI GGCC 4 cut(s) 845, 1097, 1327, 1702
BtgZI GCGATG 1 cut(s) 33
BtrI CACGTC 1 cut(s) 202
BtsCI GGATG 7 cut(s) 824, 1174, 1276, 1300, 1509, 1563, 1636
BtsIMutI CAGTG 2 cut(s) 108, 646
BveI ACCTGC 1 cut(s) 169
Cac8I GCNNGC 6 cut(s) 54, 646, 864, 1155, 1427, 1458
CaiI CAGNNNCTG 1 cut(s) 571
CfoI GCGC 3 cut(s) 58, 178, 952
Cfr10I RCCGGY 3 cut(s) 52, 898, 1093
Cfr13I GGNCC 4 cut(s) 181, 238, 591, 1436
CseI GACGC 3 cut(s) 516, 1097, 1352
Csp6I GTAC 4 cut(s) 157, 274, 630, 1074
CviAII CATG 2 cut(s) 1117, 1481
CviQI GTAC 4 cut(s) 157, 274, 630, 1074
DdeI CTNAG 3 cut(s) 767, 903, 1569
DinI GGCGCC 1 cut(s) 951
DpnI GATC 8 cut(s) 326, 602, 772, 946, 1121, 1130, 1205, 1377
DpnII GATC 8 cut(s) 324, 600, 770, 944, 1119, 1128, 1203, 1375
DriI GACNNNNNGTC 1 cut(s) 244
EaeI YGGCCR 3 cut(s) 1095, 1325, 1700
Eam1104I CTCTTC 2 cut(s) 432, 680
Eam1105I GACNNNNNGTC 1 cut(s) 244
EarI CTCTTC 2 cut(s) 432, 680
EciI GGCGGA 3 cut(s) 515, 870, 876
Ecl136II GAGCTC 3 cut(s) 108, 232, 1279
Eco130I CCWWGG 2 cut(s) 782, 1658
Eco147I AGGCCT 1 cut(s) 845
Eco24I GRGCYC 3 cut(s) 110, 234, 1281
Eco31I GGTCTC 1 cut(s) 799
Eco47I GGWCC 4 cut(s) 181, 238, 591, 1436
Eco53kI GAGCTC 3 cut(s) 108, 232, 1279
Eco57I CTGAAG 3 cut(s) 275, 305, 1600
EcoICRI GAGCTC 3 cut(s) 108, 232, 1279
EcoRI GAATTC 1 cut(s) 1690
EcoRII CCWGG 4 cut(s) 495, 648, 722, 1581
EcoT14I CCWWGG 2 cut(s) 782, 1658
EcoT38I GRGCYC 3 cut(s) 110, 234, 1281
EgeI GGCGCC 1 cut(s) 951
EheI GGCGCC 1 cut(s) 951
ErhI CCWWGG 2 cut(s) 782, 1658
FaeI CATG 2 cut(s) 1120, 1484
FaiI YATR 5 cut(s) 1118, 1193, 1482, 1612, 1647
FaqI GGGAC 2 cut(s) 251, 582
FatI CATG 2 cut(s) 1116, 1480
FauI CCCGC 1 cut(s) 173
FbaI TGATCA 2 cut(s) 600, 1203
FblI GTMKAC 1 cut(s) 761
FokI GGATG 7 cut(s) 811, 1181, 1283, 1307, 1516, 1570, 1643
FriOI GRGCYC 3 cut(s) 110, 234, 1281
FspBI CTAG 2 cut(s) 221, 783
GlaI GCGC 3 cut(s) 57, 177, 951
GsaI CCCAGC 1 cut(s) 12
GsuI CTGGAG 3 cut(s) 290, 671, 706
HaeII RGCGCY 1 cut(s) 953
HaeIII GGCC 4 cut(s) 845, 1097, 1327, 1702
HgaI GACGC 3 cut(s) 516, 1097, 1352
HhaI GCGC 3 cut(s) 58, 178, 952
Hin1I GRCGYC 2 cut(s) 527, 950
Hin1II CATG 2 cut(s) 1120, 1484
Hin6I GCGC 3 cut(s) 56, 176, 950
HinP1I GCGC 3 cut(s) 56, 176, 950
HindIII AAGCTT 1 cut(s) 1385
HphI GGTGA 5 cut(s) 28, 845, 1003, 1015, 1720
Hpy166II GTNNAC 4 cut(s) 157, 762, 1230, 1489
Hpy188III TCNNGA 8 cut(s) 269, 604, 774, 942, 1132, 1216, 1381, 1540
Hpy8I GTNNAC 4 cut(s) 157, 762, 1230, 1489
HpyAV CCTTC 8 cut(s) 7, 121, 280, 514, 610, 970, 994, 1330
HpyCH4III ACNGT 4 cut(s) 810, 833, 939, 991
HpyCH4IV ACGT 1 cut(s) 201
HpyCH4V TGCA 3 cut(s) 644, 1361, 1456
HpyF3I CTNAG 3 cut(s) 767, 903, 1569
HpySE526I ACGT 1 cut(s) 201
Hsp92I GRCGYC 2 cut(s) 527, 950
Hsp92II CATG 2 cut(s) 1120, 1484
HspAI GCGC 3 cut(s) 56, 176, 950
KasI GGCGCC 1 cut(s) 949
KroI GCCGGC 1 cut(s) 52
KroNI GCCGGC 1 cut(s) 54
Ksp22I TGATCA 2 cut(s) 600, 1203
Kzo9I GATC 8 cut(s) 324, 600, 770, 944, 1119, 1128, 1203, 1375
Lsp1109I GCAGC 3 cut(s) 198, 267, 1345
LweI GCATC 3 cut(s) 1035, 1443, 1548
MaeI CTAG 2 cut(s) 221, 783
MaeII ACGT 1 cut(s) 201
MaeIII GTNAC 6 cut(s) 33, 202, 728, 939, 991, 1112
MalI GATC 8 cut(s) 326, 602, 772, 946, 1121, 1130, 1205, 1377
MbiI CCGCTC 2 cut(s) 168, 1140
MboI GATC 8 cut(s) 324, 600, 770, 944, 1119, 1128, 1203, 1375
MboII GAAGA 8 cut(s) 268, 449, 469, 529, 625, 697, 997, 1395
MflI RGATCY 2 cut(s) 324, 770
MhlI GDGCHC 3 cut(s) 110, 234, 1281
MluCI AATT 7 cut(s) 366, 1472, 1552, 1587, 1635, 1668, 1690
Mly113I GGCGCC 1 cut(s) 950
MlyI GAGTC 4 cut(s) 254, 299, 748, 1061
MmeI TCCRAC 6 cut(s) 241, 411, 510, 852, 1110, 1463
MreI CGCCGGCG 1 cut(s) 52
MroNI GCCGGC 1 cut(s) 52
MseI TTAA 4 cut(s) 330, 1239, 1311, 1446
MspCI CTTAAG 1 cut(s) 1310
MspR9I CCNGG 6 cut(s) 236, 242, 497, 650, 724, 1583
Mva1269I GAATGC 2 cut(s) 1225, 1361
MvaI CCWGG 4 cut(s) 497, 650, 724, 1583
MvnI CGCG 4 cut(s) 58, 176, 895, 1517
NaeI GCCGGC 1 cut(s) 54
NarI GGCGCC 1 cut(s) 950
NciI CCSGG 2 cut(s) 236, 242
NdeII GATC 8 cut(s) 324, 600, 770, 944, 1119, 1128, 1203, 1375
NgoMIV GCCGGC 1 cut(s) 52
NlaIII CATG 2 cut(s) 1120, 1484
NlaIV GGNNCC 5 cut(s) 239, 789, 918, 951, 1251
NmeAIII GCCGAG 3 cut(s) 738, 772, 828
NmuCI GTSAC 4 cut(s) 202, 939, 991, 1112
NspV TTCGAA 1 cut(s) 683
PceI AGGCCT 1 cut(s) 845
PcsI WCGNNNNNNNCGW 3 cut(s) 818, 1128, 1371
PctI GAATGC 2 cut(s) 1225, 1361
PdiI GCCGGC 1 cut(s) 54
PfeI GAWTC 6 cut(s) 655, 680, 777, 1055, 1511, 1543
PflFI GACNNNGTC 1 cut(s) 757
PfoI TCCNGGA 1 cut(s) 234
Ple19I CGATCG 1 cut(s) 947
PleI GAGTC 4 cut(s) 253, 298, 748, 1061
PluTI GGCGCC 1 cut(s) 953
PpsI GAGTC 4 cut(s) 253, 298, 748, 1061
PshAI GACNNNNGTC 1 cut(s) 811
Psp124BI GAGCTC 3 cut(s) 110, 234, 1281
Psp6I CCWGG 4 cut(s) 495, 648, 722, 1581
PspFI CCCAGC 1 cut(s) 8
PspGI CCWGG 4 cut(s) 495, 648, 722, 1581
PspN4I GGNNCC 5 cut(s) 239, 789, 918, 951, 1251
PspPI GGNCC 4 cut(s) 181, 238, 591, 1436
PstNI CAGNNNCTG 1 cut(s) 571
PsuI RGATCY 2 cut(s) 324, 770
PsyI GACNNNGTC 1 cut(s) 757
PvuI CGATCG 1 cut(s) 947
RsaI GTAC 4 cut(s) 158, 275, 631, 1075
RsaNI GTAC 4 cut(s) 157, 274, 630, 1074
SacI GAGCTC 3 cut(s) 110, 234, 1281
SaqAI TTAA 4 cut(s) 330, 1239, 1311, 1446
Sau3AI GATC 8 cut(s) 324, 600, 770, 944, 1119, 1128, 1203, 1375
Sau96I GGNCC 4 cut(s) 181, 238, 591, 1436
SchI GAGTC 4 cut(s) 254, 299, 748, 1061
ScrFI CCNGG 6 cut(s) 236, 242, 497, 650, 724, 1583
SduI GDGCHC 3 cut(s) 110, 234, 1281
SfaNI GCATC 3 cut(s) 1035, 1443, 1548
SfoI GGCGCC 1 cut(s) 951
SfuI TTCGAA 1 cut(s) 683
SgrAI CRCCGGYG 1 cut(s) 52
SinI GGWCC 4 cut(s) 181, 238, 591, 1436
SmlI CTYRAG 2 cut(s) 1310, 1379
SmoI CTYRAG 2 cut(s) 1310, 1379
SpeI ACTAGT 1 cut(s) 220
Sse9I AATT 7 cut(s) 366, 1472, 1552, 1587, 1635, 1668, 1690
SseBI AGGCCT 1 cut(s) 845
SspDI GGCGCC 1 cut(s) 949
SspMI CTAG 2 cut(s) 221, 783
SstI GAGCTC 3 cut(s) 110, 234, 1281
StuI AGGCCT 1 cut(s) 845
StyD4I CCNGG 6 cut(s) 234, 240, 495, 648, 722, 1581
StyI CCWWGG 2 cut(s) 782, 1658
TaaI ACNGT 4 cut(s) 810, 833, 939, 991
TaiI ACGT 1 cut(s) 204
TaqI TCGA 6 cut(s) 248, 683, 775, 1131, 1215, 1499
TaqII GACCGA 1 cut(s) 283
TasI AATT 7 cut(s) 366, 1472, 1552, 1587, 1635, 1668, 1690
TatI WGTACW 2 cut(s) 156, 273
TfiI GAWTC 6 cut(s) 655, 680, 777, 1055, 1511, 1543
Tru1I TTAA 4 cut(s) 330, 1239, 1311, 1446
Tru9I TTAA 4 cut(s) 330, 1239, 1311, 1446
TscAI CASTG 2 cut(s) 108, 646
TseFI GTSAC 4 cut(s) 202, 939, 991, 1112
TseI GCWGC 3 cut(s) 211, 280, 1358
Tsp45I GTSAC 4 cut(s) 202, 939, 991, 1112
TspDTI ATGAA 6 cut(s) 530, 1180, 1311, 1647, 1661, 1683
TspGWI ACGGA 6 cut(s) 221, 275, 574, 647, 1010, 1181
TspRI CASTG 2 cut(s) 108, 646
Tth111I GACNNNGTC 1 cut(s) 757
Vha464I CTTAAG 1 cut(s) 1310
VpaK11BI GGWCC 4 cut(s) 181, 238, 591, 1436
XapI RAATTY 2 cut(s) 1635, 1690
XmaJI CCTAGG 1 cut(s) 782
XmiI GTMKAC 1 cut(s) 761
XspI CTAG 2 cut(s) 221, 783
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.