Rroxscaffold_1G00065940

Protein CHUP1, chloroplastic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0012111
Physical Location & Seq
Reverse (-)
87472598 .. 87476058
3461 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00065940.1

Sequence Viewer

Length: 1845 bp
ATGGTAGCTGGGAAGGTGAGGGTAGCAATGGGGTTACAGAAATCCCCATCGCCGGCGCGTAGTAGTAAGCCAGAGCCGCCTCCGAAGCCGCCGTCGCCGTCAGTGAGTTCCGGCAAGTCGTCGCAGAAGGCGGTGTTCTCACGCTCCTTCGGCGTGTACTTCCCACGCTCCTCCGCGCAGGTCCAGCCGAAGCCGCCGGACGTGACGGAGCTGCTCCGACTAGTGGAGGACCTCCGGGACCGGGAGTCGAGGCTGAAGACGGAGCTTCTGGAGTACAAGCTGCTGAAGGAGTCGGTCGCCATTGTTCCGGTGCTGGAAAACGAGATCTTTAACAAGGACGAGGAGATTGGGAGAGCCAACAGAAAAATTGAAGTGCTTGAAAGCGAGAACAGGAGGTTGAGGAGTGAAGCGGAGTTGGTTAGAGTGGAGTTGGAGGAAGAGAGGAGGGAGAGCGAGAAGAAAGTGGAGGAAATGGAGGCGAAAATCAAAGCCATCCAGGCGGAGATTGCGGAGATGAAGAAAACGGCGTCGGAAAGCGACGAGCTTTCGTCGTCGCAGAGATTTCAGGGACTGATGGAGGTGTCTGTTAGGTCCAATCTGATCAAGAACTTGAAGAAGGGAGTGAAATGTACGGACATCAGTGCAAGCCTGGAGAATCAGCAAAGACTGGAACGATCCGATTCGAAGAGAGAGGAGGTTGAGATTGAAATGCCGAGACACTCCAGGTGTAACTCGGAGGATTTCGCCGAGTCGACTCTGTCTACTCTCAGATCTCGAATCCCTAGGGTTCCGAAACCGCCGCCGAGACCGTCGTCGTCGTCATCATCCAACGGTGAAAACAAGGCCTCTACAACAGGAGAGCGAGCCAACATTCCGCCTCCGCCGCCGCTACCGGCTCAGGCGAAGGTGGCACCTCCACCGCCGCCTCCACCGTCACGATCGGCGCCGCCTCCTCCACCGCCTCCGCCGAAGGGGAGGAAGACGGTGACGGAGAAGGTGAGGCGAGTGCCGGAGGTTGTGGAGTTTTACCACTCTCTGATGCGGAGGGATTCTCGGAGAGACTCCGGTACCGGAGCTTCCGACGCACCGGCCACCGCCAATGCCCGTGACATGATCGGAGAGATCGAGAACCGCTCTGCTCACTTGCTCGCTATCAAAACGGATGTAGAAACGCAGGGAGATTTCATTAGGTTTTTGATCAAAGAAGTCGAGAATGCAGCGTTTACAGACATTAACGATGTGGTGCCTTTTGTCAAATGGCTGGATGATGAGCTCTCTTATTTGGTGGATGAAAGAGCTGTGCTTAAGCATTTTGACTGGCCGGAGCAGAAGGCTGACGCTCTGCGTGAGGCTGCATTCGGGTATTGTGATCTCAAGAAGCTTGAAACAGAGGCTTCTTCGTTCCCTGACCATTCCCGCCACCCCTGCGGTCCAACCCTTAAGAAGATGCAGGCTTTGCTTGAAAAATTGGAGCATGGTGTTTACAACCTTTCGAGGATGAGAGAATCCGCGACGAAAAGATACAAAGTTTTCCAGATTCCTACAAATTGGATGCTGGATACTGAGTTTGTAAGCCAGATCAAGCTGGCATCCGTAAAATTGGCAATGAAGTATATGAAGAGAGTCTCTGCGGAGCTTGAAATAGTAGGTGGTGGTGGCCCAGAAGAAGAAGAGCTGATAGTTCAAGGCGTACGATTTGCCTTCCGTGTGCATCAGTTTGCTGGTGGTTTCGATGCAGAAACGATGAGAGCTTTCCAGGTATTGAGAGATAAAGTGAGATCATGCCATGTACAATGCCAAAACCAGCAACAGCAAAAATTTGTTTGCAAGTCCACACCATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

614

Amino Acids

69.07

Weight (kDa)

8.85

Isoelectric Point (pI)

64.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012111)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18570 AT4G18570
fragaria_vesca FvH4_3g08000
malus_domestica MD05G1303500.v1.1 MD10G1282700.v1.1
prunus_persica Prupe.4G059200_v2.0.a1
pyrus_communis pycom05g28050 pycom10g23580
rosa_chinensis RchiOBHm_Chr5g0010311
rosa_laevigata RLG00000031736
rosa_multiflora Rmu_co8025906.1_g000001 Rmu_sc0012578.1_g000002
rosa_roxburghii Rroxscaffold_1G00065940
rosa_rugosa Rorug04G0450100
rosa_samantha Rh5AG081200 Rh5BG076100 Rh5CG089400 Rh5DG076800
rosa_wichuraiana Rw5G007520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 169
Acc65I GGTACC 1 cut(s) 1067
AccB1I GGYRCC 4 cut(s) 910, 943, 1067, 1243
AccBSI CCGCTC 1 cut(s) 1134
AccI GTMKAC 2 cut(s) 752, 761
AccII CGCG 3 cut(s) 58, 176, 1511
AclWI GGATC 1 cut(s) 669
AcoI YGGCCR 2 cut(s) 1089, 1319
AcsI RAATTY 1 cut(s) 1817
AcuI CTGAAG 2 cut(s) 275, 305
AcyI GRCGYC 2 cut(s) 527, 944
AfaI GTAC 6 cut(s) 158, 275, 631, 1069, 1692, 1791
AfiI CCNNNNNNNGG 4 cut(s) 52, 223, 241, 971
AflII CTTAAG 2 cut(s) 1304, 1439
AgsI TTSAA 8 cut(s) 371, 380, 613, 707, 1385, 1463, 1640, 1685
AhdI GACNNNNNGTC 1 cut(s) 244
AhlI ACTAGT 1 cut(s) 220
AjiI CACGTC 1 cut(s) 202
AjnI CCWGG 4 cut(s) 495, 648, 722, 1755
Alw21I GWGCWC 1 cut(s) 1275
Alw26I GTCTC 4 cut(s) 709, 799, 1053, 1630
AlwI GGATC 1 cut(s) 669
AlwNI CAGNNNCTG 1 cut(s) 571
AoxI GGCC 4 cut(s) 843, 1089, 1319, 1657
ApeKI GCWGC 4 cut(s) 211, 280, 1217, 1352
ApoI RAATTY 1 cut(s) 1817
ArsI GACNNNNNNTTYG 2 cut(s) 77, 109
Asp718I GGTACC 1 cut(s) 1067
AspA2I CCTAGG 1 cut(s) 782
AspLEI GCGC 3 cut(s) 58, 178, 946
AspS9I GGNCC 6 cut(s) 181, 229, 238, 591, 1430, 1658
AsuC2I CCSGG 2 cut(s) 236, 242
AsuHPI GGTGA 4 cut(s) 28, 845, 997, 1009
AsuII TTCGAA 1 cut(s) 683
AvaII GGWCC 5 cut(s) 181, 229, 238, 591, 1430
AvrII CCTAGG 1 cut(s) 782
BaeI ACNNNNGTAYC 2 cut(s) 1051, 1084
BanI GGYRCC 4 cut(s) 910, 943, 1067, 1243
BanII GRGCYC 1 cut(s) 1275
BarI GAAGNNNNNNTAC 2 cut(s) 1060, 1092
BbsI GAAGAC 2 cut(s) 263, 986
Bbv12I GWGCWC 1 cut(s) 1275
BbvI GCAGC 4 cut(s) 198, 267, 1229, 1339
BccI CCATC 3 cut(s) 55, 500, 568
BceAI ACGGC 3 cut(s) 76, 82, 540
BciT130I CCWGG 4 cut(s) 497, 650, 724, 1757
BciVI GTATCC 1 cut(s) 1552
BclI TGATCA 2 cut(s) 600, 1197
BcnI CCSGG 2 cut(s) 236, 242
BcoDI GTCTC 4 cut(s) 709, 799, 1053, 1630
BcuI ACTAGT 1 cut(s) 220
BfaI CTAG 2 cut(s) 221, 783
BfoI RGCGCY 1 cut(s) 947
BfrI CTTAAG 2 cut(s) 1304, 1439
BfuAI ACCTGC 1 cut(s) 169
BfuI GTATCC 1 cut(s) 1552
BglI GCCNNNNNGGC 1 cut(s) 497
BglII AGATCT 2 cut(s) 324, 770
BlnI CCTAGG 1 cut(s) 782
Bme1390I CCNGG 6 cut(s) 236, 242, 497, 650, 724, 1757
Bme18I GGWCC 5 cut(s) 181, 229, 238, 591, 1430
BmeRI GACNNNNNGTC 1 cut(s) 244
BmgBI CACGTC 1 cut(s) 202
BmgT120I GGNCC 6 cut(s) 181, 229, 238, 591, 1430, 1658
BmiI GGNNCC 6 cut(s) 239, 789, 912, 945, 1069, 1245
BmrFI CCNGG 6 cut(s) 236, 242, 497, 650, 724, 1757
BmsI GCATC 6 cut(s) 1029, 1437, 1542, 1598, 1720, 1723
BoxI GACNNNNGTC 1 cut(s) 811
BpiI GAAGAC 2 cut(s) 263, 986
BplI GAGNNNNNCTC 4 cut(s) 1036, 1068, 1118, 1150
BpmI CTGGAG 3 cut(s) 290, 671, 706
Bpu10I CCTNAGC 1 cut(s) 897
Bpu14I TTCGAA 1 cut(s) 683
BpuEI CTTGAG 1 cut(s) 1358
BpuMI CCSGG 2 cut(s) 236, 242
BsaHI GRCGYC 2 cut(s) 527, 944
BsaI GGTCTC 1 cut(s) 799
BsaJI CCNNGG 1 cut(s) 782
BsaWI WCCGGW 3 cut(s) 307, 1064, 1070
Bsc4I CCNNNNNNNGG 4 cut(s) 52, 223, 241, 971
Bse118I RCCGGY 3 cut(s) 52, 892, 1087
Bse1I ACTGG 2 cut(s) 672, 1322
Bse3DI GCAATG 2 cut(s) 33, 1611
BseBI CCWGG 4 cut(s) 497, 650, 724, 1757
BseDI CCNNGG 1 cut(s) 782
BseGI GGATG 8 cut(s) 492, 824, 1168, 1270, 1294, 1503, 1557, 1589
BseLI CCNNNNNNNGG 4 cut(s) 52, 223, 241, 971
BseMI GCAATG 2 cut(s) 33, 1611
BseMII CTCAG 3 cut(s) 781, 911, 1554
BseNI ACTGG 2 cut(s) 672, 1322
BseRI GAGGAG 6 cut(s) 160, 356, 415, 457, 707, 942
BseXI GCAGC 4 cut(s) 198, 267, 1229, 1339
BseYI CCCAGC 1 cut(s) 8
Bsh1236I CGCG 3 cut(s) 58, 176, 1511
Bsh1285I CGRYCG 2 cut(s) 297, 941
BshFI GGCC 4 cut(s) 845, 1091, 1321, 1659
BshNI GGYRCC 4 cut(s) 910, 943, 1067, 1243
BsiEI CGRYCG 2 cut(s) 297, 941
BsiHKAI GWGCWC 1 cut(s) 1275
BsiWI CGTACG 1 cut(s) 1690
BslFI GGGAC 2 cut(s) 251, 582
BslI CCNNNNNNNGG 4 cut(s) 52, 223, 241, 971
BsmAI GTCTC 4 cut(s) 709, 799, 1053, 1630
BsmFI GGGAC 2 cut(s) 251, 582
BsmI GAATGC 2 cut(s) 1219, 1355
BsnI GGCC 4 cut(s) 845, 1091, 1321, 1659
Bso31I GGTCTC 1 cut(s) 799
Bsp119I TTCGAA 1 cut(s) 683
Bsp1286I GDGCHC 1 cut(s) 1275
Bsp1407I TGTACA 1 cut(s) 1789
BspANI GGCC 4 cut(s) 845, 1091, 1321, 1659
BspCNI CTCAG 3 cut(s) 780, 910, 1555
BspFNI CGCG 3 cut(s) 58, 176, 1511
BspLI GGNNCC 6 cut(s) 239, 789, 912, 945, 1069, 1245
BspMI ACCTGC 1 cut(s) 169
BspPI GGATC 1 cut(s) 669
BspQI GCTCTTC 1 cut(s) 1665
BspT104I TTCGAA 1 cut(s) 683
BspT107I GGYRCC 4 cut(s) 910, 943, 1067, 1243
BspTI CTTAAG 2 cut(s) 1304, 1439
BspTNI GGTCTC 1 cut(s) 799
BsrBI CCGCTC 1 cut(s) 1134
BsrDI GCAATG 2 cut(s) 33, 1611
BsrFI RCCGGY 3 cut(s) 52, 892, 1087
BsrGI TGTACA 1 cut(s) 1789
BsrI ACTGG 2 cut(s) 672, 1322
BssAI RCCGGY 3 cut(s) 52, 892, 1087
BssECI CCNNGG 1 cut(s) 782
BssNI GRCGYC 2 cut(s) 527, 944
BssT1I CCWWGG 1 cut(s) 782
Bst2UI CCWGG 4 cut(s) 497, 650, 724, 1757
Bst4CI ACNGT 4 cut(s) 810, 833, 933, 985
Bst6I CTCTTC 4 cut(s) 432, 680, 1613, 1665
BstACI GRCGYC 2 cut(s) 527, 944
BstAFI CTTAAG 2 cut(s) 1304, 1439
BstAPI GCANNNNNTGC 1 cut(s) 1456
BstAUI TGTACA 1 cut(s) 1789
BstBI TTCGAA 1 cut(s) 683
BstC8I GCNNGC 6 cut(s) 54, 646, 864, 1149, 1452, 1587
BstDEI CTNAG 3 cut(s) 767, 897, 1563
BstF5I GGATG 8 cut(s) 492, 824, 1168, 1270, 1294, 1503, 1557, 1589
BstFNI CGCG 3 cut(s) 58, 176, 1511
BstH2I RGCGCY 1 cut(s) 947
BstHHI GCGC 3 cut(s) 58, 178, 946
BstMAI GTCTC 4 cut(s) 709, 799, 1053, 1630
BstMCI CGRYCG 2 cut(s) 297, 941
BstNI CCWGG 4 cut(s) 497, 650, 724, 1757
BstPAI GACNNNNGTC 1 cut(s) 811
BstSCI CCNGG 6 cut(s) 234, 240, 495, 648, 722, 1755
BstUI CGCG 3 cut(s) 58, 176, 1511
BstV1I GCAGC 4 cut(s) 198, 267, 1229, 1339
BstV2I GAAGAC 2 cut(s) 263, 986
BstX2I RGATCY 2 cut(s) 324, 770
BstYI RGATCY 2 cut(s) 324, 770
BsuI GTATCC 1 cut(s) 1552
BsuRI GGCC 4 cut(s) 845, 1091, 1321, 1659
BtgZI GCGATG 1 cut(s) 33
BtrI CACGTC 1 cut(s) 202
BtsCI GGATG 8 cut(s) 492, 824, 1168, 1270, 1294, 1503, 1557, 1589
BtsIMutI CAGTG 2 cut(s) 108, 646
BveI ACCTGC 1 cut(s) 169
Cac8I GCNNGC 6 cut(s) 54, 646, 864, 1149, 1452, 1587
CaiI CAGNNNCTG 1 cut(s) 571
CfoI GCGC 3 cut(s) 58, 178, 946
Cfr10I RCCGGY 3 cut(s) 52, 892, 1087
Cfr13I GGNCC 6 cut(s) 181, 229, 238, 591, 1430, 1658
CseI GACGC 3 cut(s) 516, 1091, 1346
Csp6I GTAC 6 cut(s) 157, 274, 630, 1068, 1691, 1790
CviAII CATG 5 cut(s) 1111, 1475, 1782, 1787, 1839
CviQI GTAC 6 cut(s) 157, 274, 630, 1068, 1691, 1790
DdeI CTNAG 3 cut(s) 767, 897, 1563
DinI GGCGCC 1 cut(s) 945
DriI GACNNNNNGTC 1 cut(s) 244
EaeI YGGCCR 2 cut(s) 1089, 1319
Eam1104I CTCTTC 4 cut(s) 432, 680, 1613, 1665
Eam1105I GACNNNNNGTC 1 cut(s) 244
EarI CTCTTC 4 cut(s) 432, 680, 1613, 1665
EciI GGCGGA 4 cut(s) 515, 864, 870, 954
Ecl136II GAGCTC 1 cut(s) 1273
Eco130I CCWWGG 1 cut(s) 782
Eco147I AGGCCT 1 cut(s) 845
Eco24I GRGCYC 1 cut(s) 1275
Eco31I GGTCTC 1 cut(s) 799
Eco47I GGWCC 5 cut(s) 181, 229, 238, 591, 1430
Eco53kI GAGCTC 1 cut(s) 1273
Eco57I CTGAAG 2 cut(s) 275, 305
EcoICRI GAGCTC 1 cut(s) 1273
EcoO109I RGGNCCY 1 cut(s) 229
EcoRII CCWGG 4 cut(s) 495, 648, 722, 1755
EcoT14I CCWWGG 1 cut(s) 782
EcoT38I GRGCYC 1 cut(s) 1275
EgeI GGCGCC 1 cut(s) 945
EheI GGCGCC 1 cut(s) 945
ErhI CCWWGG 1 cut(s) 782
FaeI CATG 5 cut(s) 1114, 1478, 1785, 1790, 1842
FaiI YATR 7 cut(s) 1112, 1476, 1614, 1616, 1783, 1788, 1840
FaqI GGGAC 2 cut(s) 251, 582
FatI CATG 5 cut(s) 1110, 1474, 1781, 1786, 1838
FauI CCCGC 1 cut(s) 1424
FbaI TGATCA 2 cut(s) 600, 1197
FblI GTMKAC 2 cut(s) 752, 761
FokI GGATG 8 cut(s) 479, 811, 1175, 1277, 1301, 1510, 1564, 1576
FriOI GRGCYC 1 cut(s) 1275
FspBI CTAG 2 cut(s) 221, 783
GlaI GCGC 3 cut(s) 57, 177, 945
GsaI CCCAGC 1 cut(s) 12
GsuI CTGGAG 3 cut(s) 290, 671, 706
HaeII RGCGCY 1 cut(s) 947
HaeIII GGCC 4 cut(s) 845, 1091, 1321, 1659
HgaI GACGC 3 cut(s) 516, 1091, 1346
HhaI GCGC 3 cut(s) 58, 178, 946
Hin1I GRCGYC 2 cut(s) 527, 944
Hin1II CATG 5 cut(s) 1114, 1478, 1785, 1790, 1842
Hin6I GCGC 3 cut(s) 56, 176, 944
HinP1I GCGC 3 cut(s) 56, 176, 944
HincII GTYRAC 1 cut(s) 753
HindII GTYRAC 1 cut(s) 753
HindIII AAGCTT 1 cut(s) 1379
HphI GGTGA 4 cut(s) 28, 845, 997, 1009
Hpy166II GTNNAC 6 cut(s) 157, 753, 762, 1224, 1483, 1833
Hpy188III TCNNGA 8 cut(s) 269, 604, 774, 936, 1126, 1210, 1375, 1534
Hpy8I GTNNAC 6 cut(s) 157, 753, 762, 1224, 1483, 1833
HpyCH4III ACNGT 4 cut(s) 810, 833, 933, 985
HpyCH4IV ACGT 1 cut(s) 201
HpyCH4V TGCA 7 cut(s) 644, 1217, 1355, 1450, 1711, 1736, 1827
HpyF3I CTNAG 3 cut(s) 767, 897, 1563
HpySE526I ACGT 1 cut(s) 201
Hsp92I GRCGYC 2 cut(s) 527, 944
Hsp92II CATG 5 cut(s) 1114, 1478, 1785, 1790, 1842
HspAI GCGC 3 cut(s) 56, 176, 944
KasI GGCGCC 1 cut(s) 943
KpnI GGTACC 1 cut(s) 1071
KroI GCCGGC 1 cut(s) 52
KroNI GCCGGC 1 cut(s) 54
Ksp22I TGATCA 2 cut(s) 600, 1197
LguI GCTCTTC 1 cut(s) 1665
LmnI GCTCC 9 cut(s) 149, 173, 208, 219, 262, 1073, 1324, 1471, 1633
Lsp1109I GCAGC 4 cut(s) 198, 267, 1229, 1339
LweI GCATC 6 cut(s) 1029, 1437, 1542, 1598, 1720, 1723
MaeI CTAG 2 cut(s) 221, 783
MaeII ACGT 1 cut(s) 201
MaeIII GTNAC 6 cut(s) 33, 202, 728, 933, 985, 1106
MbiI CCGCTC 1 cut(s) 1134
MflI RGATCY 2 cut(s) 324, 770
MhlI GDGCHC 1 cut(s) 1275
MluCI AATT 5 cut(s) 366, 1466, 1546, 1598, 1817
Mly113I GGCGCC 1 cut(s) 944
MlyI GAGTC 6 cut(s) 254, 299, 748, 758, 1055, 1632
MmeI TCCRAC 6 cut(s) 241, 411, 510, 852, 1104, 1457
MreI CGCCGGCG 1 cut(s) 52
MroNI GCCGGC 1 cut(s) 52
MseI TTAA 4 cut(s) 330, 1233, 1305, 1440
MspCI CTTAAG 2 cut(s) 1304, 1439
MspR9I CCNGG 6 cut(s) 236, 242, 497, 650, 724, 1757
Mva1269I GAATGC 2 cut(s) 1219, 1355
MvaI CCWGG 4 cut(s) 497, 650, 724, 1757
MvnI CGCG 3 cut(s) 58, 176, 1511
NaeI GCCGGC 1 cut(s) 54
NarI GGCGCC 1 cut(s) 944
NciI CCSGG 2 cut(s) 236, 242
NgoMIV GCCGGC 1 cut(s) 52
NlaIII CATG 5 cut(s) 1114, 1478, 1785, 1790, 1842
NlaIV GGNNCC 6 cut(s) 239, 789, 912, 945, 1069, 1245
NmeAIII GCCGAG 3 cut(s) 738, 772, 828
NmuCI GTSAC 4 cut(s) 202, 933, 985, 1106
NspV TTCGAA 1 cut(s) 683
PceI AGGCCT 1 cut(s) 845
PciSI GCTCTTC 1 cut(s) 1665
PcsI WCGNNNNNNNCGW 1 cut(s) 1122
PctI GAATGC 2 cut(s) 1219, 1355
PdiI GCCGGC 1 cut(s) 54
PfeI GAWTC 6 cut(s) 655, 680, 777, 1049, 1505, 1537
Pfl23II CGTACG 1 cut(s) 1690
PflFI GACNNNGTC 1 cut(s) 757
PfoI TCCNGGA 1 cut(s) 234
Ple19I CGATCG 1 cut(s) 941
PleI GAGTC 6 cut(s) 253, 298, 748, 757, 1055, 1631
PluTI GGCGCC 1 cut(s) 947
PpsI GAGTC 6 cut(s) 253, 298, 748, 757, 1055, 1631
PpuMI RGGWCCY 1 cut(s) 229
PshAI GACNNNNGTC 1 cut(s) 811
Psp124BI GAGCTC 1 cut(s) 1275
Psp5II RGGWCCY 1 cut(s) 229
Psp6I CCWGG 4 cut(s) 495, 648, 722, 1755
PspFI CCCAGC 1 cut(s) 8
PspGI CCWGG 4 cut(s) 495, 648, 722, 1755
PspLI CGTACG 1 cut(s) 1690
PspN4I GGNNCC 6 cut(s) 239, 789, 912, 945, 1069, 1245
PspPI GGNCC 6 cut(s) 181, 229, 238, 591, 1430, 1658
PspPPI RGGWCCY 1 cut(s) 229
PstNI CAGNNNCTG 1 cut(s) 571
PsuI RGATCY 2 cut(s) 324, 770
PsyI GACNNNGTC 1 cut(s) 757
PvuI CGATCG 1 cut(s) 941
RsaI GTAC 6 cut(s) 158, 275, 631, 1069, 1692, 1791
RsaNI GTAC 6 cut(s) 157, 274, 630, 1068, 1691, 1790
SacI GAGCTC 1 cut(s) 1275
SalI GTCGAC 1 cut(s) 751
SapI GCTCTTC 1 cut(s) 1665
SaqAI TTAA 4 cut(s) 330, 1233, 1305, 1440
Sau96I GGNCC 6 cut(s) 181, 229, 238, 591, 1430, 1658
SchI GAGTC 6 cut(s) 254, 299, 748, 758, 1055, 1632
ScrFI CCNGG 6 cut(s) 236, 242, 497, 650, 724, 1757
SduI GDGCHC 1 cut(s) 1275
SfaNI GCATC 6 cut(s) 1029, 1437, 1542, 1598, 1720, 1723
SfoI GGCGCC 1 cut(s) 945
SfuI TTCGAA 1 cut(s) 683
SgrAI CRCCGGYG 1 cut(s) 52
SinI GGWCC 5 cut(s) 181, 229, 238, 591, 1430
SmlI CTYRAG 3 cut(s) 1304, 1373, 1439
SmoI CTYRAG 3 cut(s) 1304, 1373, 1439
SpeI ACTAGT 1 cut(s) 220
Sse9I AATT 5 cut(s) 366, 1466, 1546, 1598, 1817
SseBI AGGCCT 1 cut(s) 845
SspDI GGCGCC 1 cut(s) 943
SspMI CTAG 2 cut(s) 221, 783
SstI GAGCTC 1 cut(s) 1275
StuI AGGCCT 1 cut(s) 845
StyD4I CCNGG 6 cut(s) 234, 240, 495, 648, 722, 1755
StyI CCWWGG 1 cut(s) 782
TaaI ACNGT 4 cut(s) 810, 833, 933, 985
TaiI ACGT 1 cut(s) 204
TaqI TCGA 8 cut(s) 248, 683, 752, 775, 1125, 1209, 1493, 1731
TaqII GACCGA 1 cut(s) 283
TasI AATT 5 cut(s) 366, 1466, 1546, 1598, 1817
TatI WGTACW 3 cut(s) 156, 273, 1789
TauI GCSGC 8 cut(s) 79, 91, 196, 802, 886, 889, 925, 949
TfiI GAWTC 6 cut(s) 655, 680, 777, 1049, 1505, 1537
Tru1I TTAA 4 cut(s) 330, 1233, 1305, 1440
Tru9I TTAA 4 cut(s) 330, 1233, 1305, 1440
TscAI CASTG 2 cut(s) 108, 646
TseFI GTSAC 4 cut(s) 202, 933, 985, 1106
TseI GCWGC 4 cut(s) 211, 280, 1217, 1352
Tsp45I GTSAC 4 cut(s) 202, 933, 985, 1106
TspDTI ATGAA 5 cut(s) 530, 1174, 1305, 1622, 1631
TspGWI ACGGA 7 cut(s) 221, 275, 647, 1004, 1175, 1582, 1694
TspRI CASTG 2 cut(s) 108, 646
Tth111I GACNNNGTC 1 cut(s) 757
Vha464I CTTAAG 2 cut(s) 1304, 1439
VpaK11BI GGWCC 5 cut(s) 181, 229, 238, 591, 1430
XapI RAATTY 1 cut(s) 1817
XmaJI CCTAGG 1 cut(s) 782
XmiI GTMKAC 2 cut(s) 752, 761
XspI CTAG 2 cut(s) 221, 783
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.