pycom10g27980

Phosphoribosylglycinamide formyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0013535
Physical Location & Seq
Forward (+)
28773733 .. 28776019
2287 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 924 bp
ATGGAAGCTCAGCGTCTGCTTTCTGGATTCTGCTCACCCTCGCCGATTCCAAACGCCAGAACCCAATACTTCGTCAGATTTCCCTCCCCTTCTCCTTCTCCTTCTTCTTCTTCTTCTTCTTCCTCCGCCGCTTCTTTTGCTCAATCCCACAGGTGGGTCTCCTTCAAAGCTCGCCCTTTGTCTACCAAGCTAATACAGTGCAGGAACACCGCGGACACAGAGAGAGCTGAGGTGGTGGTTTCTTCGGATAAACAAGATTTGACAAGTGGGATTCGACGGAAAAAGCTTGCCGTTTTTGTTTCCGGCGGGGGCTCCAACTTCCGTTCGATCCATGAAGCGTGTCTTAACGGTTTAATTCTCGGAGACGTTGTGGTTTTGGTCGCAAGTAAACAAGGTTGTGGAGGCGCCGACTATGCAAGAGAAAAAGGCCTCCCAATTATGGTGTTCCCAAAAACTAAACTTGAGCCTGACGGAATATCTCCAGCTGACCTTGTTGCTACCTTTAGGGGATTAGAGGTTGACTTTGTTCTCCTGGCTGGTTACTTGAAACTTATACCGGTTGAGTTGATACAAGCTTATCCCAGATCCATACTGAACATCCATCCCTCACTTCTTCCAGCATTTGGAGGCAAAGGTCATTACGGTATGAAGGTCCACAAGGCAGTCATTGCTTCTGGGGCAAGATACACAGGCCCTACAATACATTTTGTCGATGAGCACTATGATACAGGACGTATCCTTGCCCAAAGAGTTGTCCCTGTGCTTGCTAAGGACACTGCCGAGGAGCTGGCAGCAAGGGTTCTTCGGGAGGAGCACTCCTTGTACGTGGAAGTGATAACAGCAGTATGTGAAGAACGGATGGCTTGGAGGGACGATGGTGTTCCTATTATCCGGAGCAAAGAAAATCCCAACGAATACAGCTAG

Protein Analysis

308

Amino Acids

33.45

Weight (kDa)

8.9

Isoelectric Point (pI)

52.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Formyl_trans_N PF00551 94 - 279 1.5e-53 Formyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013535)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G31220
fragaria_vesca FvH4_5g23990
malus_domestica MD03G1153200.v1.1 MD10G1330400.v1.1
prunus_persica Prupe.4G012000_v2.0.a1
pyrus_communis pycom03g10680 pycom10g27980
rosa_chinensis RchiOBHm_Chr7g0213451
rosa_laevigata RLG00000002803
rosa_multiflora Rmu_sc0013012.1_g000010 Rmu_ssc0000262.1_g000002
rosa_roxburghii Rroxscaffold_3G00245870
rosa_rugosa Rorug07G0142400
rosa_samantha Rh7AG274400 Rh7BG269900 Rh7CG293600 Rh7DG281900
rosa_wichuraiana Rw7G023800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 404
AccB7I CCANNNNNTGG 1 cut(s) 623
AccI GTMKAC 1 cut(s) 182
AccII CGCG 1 cut(s) 212
AccIII TCCGGA 1 cut(s) 891
AciI CCGC 5 cut(s) 126, 129, 210, 212, 306
AclWI GGATC 2 cut(s) 322, 579
AcyI GRCGYC 1 cut(s) 405
AfaI GTAC 1 cut(s) 824
AfiI CCNNNNNNNGG 4 cut(s) 153, 154, 439, 623
AgeI ACCGGT 1 cut(s) 556
AgsI TTSAA 2 cut(s) 166, 547
AjnI CCWGG 1 cut(s) 531
AluBI AGCT 9 cut(s) 8, 170, 190, 227, 286, 485, 575, 787, 921
AluI AGCT 9 cut(s) 8, 170, 190, 227, 286, 485, 575, 787, 921
Alw21I GWGCWC 2 cut(s) 720, 816
Alw26I GTCTC 2 cut(s) 163, 357
AlwI GGATC 2 cut(s) 322, 579
AlwNI CAGNNNCTG 1 cut(s) 16
Aor13HI TCCGGA 1 cut(s) 891
AoxI GGCC 2 cut(s) 427, 691
ApeKI GCWGC 1 cut(s) 791
AsiGI ACCGGT 1 cut(s) 556
AspLEI GCGC 1 cut(s) 407
AspS9I GGNCC 2 cut(s) 652, 692
AsuHPI GGTGA 1 cut(s) 27
AvaII GGWCC 1 cut(s) 652
BanI GGYRCC 1 cut(s) 404
BanII GRGCYC 1 cut(s) 314
Bbv12I GWGCWC 2 cut(s) 720, 816
BbvCI CCTCAGC 1 cut(s) 228
BbvI GCAGC 1 cut(s) 803
BccI CCATC 3 cut(s) 609, 853, 869
BceAI ACGGC 1 cut(s) 275
BciT130I CCWGG 1 cut(s) 533
BciVI GTATCC 1 cut(s) 746
BcoDI GTCTC 2 cut(s) 163, 357
BfaI CTAG 1 cut(s) 922
BfoI RGCGCY 1 cut(s) 408
BfuI GTATCC 1 cut(s) 746
BisI GCNGC 2 cut(s) 129, 792
BlpI GCTNAGC 1 cut(s) 9
BlsI GCNGC 2 cut(s) 130, 793
Bme1390I CCNGG 1 cut(s) 533
Bme18I GGWCC 1 cut(s) 652
BmgT120I GGNCC 2 cut(s) 652, 692
BmiI GGNNCC 2 cut(s) 313, 406
BmrFI CCNGG 1 cut(s) 533
BplI GAGNNNNNCTC 2 cut(s) 800, 832
BpmI CTGGAG 1 cut(s) 465
Bpu10I CCTNAGC 2 cut(s) 228, 768
Bpu1102I GCTNAGC 1 cut(s) 9
BpuEI CTTGAG 1 cut(s) 482
BsaAI YACGTR 1 cut(s) 826
BsaHI GRCGYC 1 cut(s) 405
BsaI GGTCTC 1 cut(s) 163
BsaJI CCNNGG 2 cut(s) 210, 780
BsaWI WCCGGW 2 cut(s) 556, 891
BsaXI ACNNNNNCTCC 2 cut(s) 354, 384
Bsc4I CCNNNNNNNGG 4 cut(s) 153, 154, 439, 623
Bse118I RCCGGY 1 cut(s) 556
Bse3DI GCAATG 1 cut(s) 666
BseAI TCCGGA 1 cut(s) 891
BseBI CCWGG 1 cut(s) 533
BseDI CCNNGG 2 cut(s) 210, 780
BseGI GGATG 3 cut(s) 597, 601, 864
BseLI CCNNNNNNNGG 4 cut(s) 153, 154, 439, 623
BseMI GCAATG 1 cut(s) 666
BseMII CTCAG 2 cut(s) 23, 219
BseRI GAGGAG 2 cut(s) 797, 824
BseXI GCAGC 1 cut(s) 803
BsgI GTGCAG 1 cut(s) 220
Bsh1236I CGCG 1 cut(s) 212
BshFI GGCC 2 cut(s) 429, 693
BshNI GGYRCC 1 cut(s) 404
BshTI ACCGGT 1 cut(s) 556
BsiHKAI GWGCWC 2 cut(s) 720, 816
BsiSI CCGG 3 cut(s) 303, 557, 892
BslFI GGGAC 2 cut(s) 740, 884
BslI CCNNNNNNNGG 4 cut(s) 153, 154, 439, 623
BsmAI GTCTC 2 cut(s) 163, 357
BsmBI CGTCTC 1 cut(s) 357
BsmFI GGGAC 2 cut(s) 740, 884
BsnI GGCC 2 cut(s) 429, 693
Bso31I GGTCTC 1 cut(s) 163
Bsp1286I GDGCHC 3 cut(s) 314, 720, 816
Bsp13I TCCGGA 1 cut(s) 891
Bsp143I GATC 2 cut(s) 327, 584
Bsp1720I GCTNAGC 1 cut(s) 9
BspACI CCGC 5 cut(s) 126, 129, 210, 212, 306
BspANI GGCC 2 cut(s) 429, 693
BspCNI CTCAG 2 cut(s) 22, 220
BspEI TCCGGA 1 cut(s) 891
BspFNI CGCG 1 cut(s) 212
BspLI GGNNCC 2 cut(s) 313, 406
BspPI GGATC 2 cut(s) 322, 579
BspT107I GGYRCC 1 cut(s) 404
BspTNI GGTCTC 1 cut(s) 163
BsrDI GCAATG 1 cut(s) 666
BsrFI RCCGGY 1 cut(s) 556
BssAI RCCGGY 1 cut(s) 556
BssECI CCNNGG 2 cut(s) 210, 780
BssMI GATC 2 cut(s) 327, 584
BssNI GRCGYC 1 cut(s) 405
Bst2UI CCWGG 1 cut(s) 533
Bst4CI ACNGT 3 cut(s) 198, 350, 644
BstACI GRCGYC 1 cut(s) 405
BstAPI GCANNNNNTGC 1 cut(s) 668
BstBAI YACGTR 1 cut(s) 826
BstC8I GCNNGC 4 cut(s) 172, 288, 765, 789
BstDEI CTNAG 3 cut(s) 9, 228, 768
BstDSI CCRYGG 1 cut(s) 210
BstF5I GGATG 3 cut(s) 597, 601, 864
BstFNI CGCG 1 cut(s) 212
BstH2I RGCGCY 1 cut(s) 408
BstHHI GCGC 1 cut(s) 407
BstKTI GATC 2 cut(s) 330, 587
BstMAI GTCTC 2 cut(s) 163, 357
BstMBI GATC 2 cut(s) 327, 584
BstMWI GCNNNNNNNGC 4 cut(s) 137, 413, 668, 677
BstNI CCWGG 1 cut(s) 533
BstSCI CCNGG 1 cut(s) 531
BstUI CGCG 1 cut(s) 212
BstV1I GCAGC 1 cut(s) 803
BstX2I RGATCY 1 cut(s) 584
BstYI RGATCY 1 cut(s) 584
BsuI GTATCC 1 cut(s) 746
BsuRI GGCC 2 cut(s) 429, 693
BtgI CCRYGG 1 cut(s) 210
BtsCI GGATG 3 cut(s) 597, 601, 864
BtsI GCAGTG 1 cut(s) 774
BtsIMutI CAGTG 2 cut(s) 203, 774
Cac8I GCNNGC 4 cut(s) 172, 288, 765, 789
CaiI CAGNNNCTG 1 cut(s) 16
CfoI GCGC 1 cut(s) 407
Cfr10I RCCGGY 1 cut(s) 556
Cfr13I GGNCC 2 cut(s) 652, 692
Cfr42I CCGCGG 1 cut(s) 213
CseI GACGC 1 cut(s) 2
Csp6I GTAC 1 cut(s) 823
CspAI ACCGGT 1 cut(s) 556
CviAII CATG 1 cut(s) 332
CviQI GTAC 1 cut(s) 823
DdeI CTNAG 3 cut(s) 9, 228, 768
DinI GGCGCC 1 cut(s) 406
DpnI GATC 2 cut(s) 329, 586
DpnII GATC 2 cut(s) 327, 584
EciI GGCGGA 1 cut(s) 115
Eco147I AGGCCT 1 cut(s) 429
Eco24I GRGCYC 1 cut(s) 314
Eco31I GGTCTC 1 cut(s) 163
Eco47I GGWCC 1 cut(s) 652
EcoO109I RGGNCCY 1 cut(s) 692
EcoRII CCWGG 1 cut(s) 531
EcoT38I GRGCYC 1 cut(s) 314
EgeI GGCGCC 1 cut(s) 406
EheI GGCGCC 1 cut(s) 406
Esp3I CGTCTC 1 cut(s) 357
FaeI CATG 1 cut(s) 335
FaiI YATR 8 cut(s) 333, 414, 440, 554, 590, 647, 723, 847
FalI AAGNNNNNCTT 2 cut(s) 327, 359
FaqI GGGAC 2 cut(s) 740, 884
FatI CATG 1 cut(s) 331
FauI CCCGC 1 cut(s) 299
FblI GTMKAC 1 cut(s) 182
Fnu4HI GCNGC 2 cut(s) 129, 792
FokI GGATG 3 cut(s) 584, 588, 871
FriOI GRGCYC 1 cut(s) 314
Fsp4HI GCNGC 2 cut(s) 129, 792
FspBI CTAG 1 cut(s) 922
GlaI GCGC 1 cut(s) 406
GluI GCNGC 2 cut(s) 129, 792
GsuI CTGGAG 1 cut(s) 465
HaeII RGCGCY 1 cut(s) 408
HaeIII GGCC 2 cut(s) 429, 693
HapII CCGG 3 cut(s) 303, 557, 892
HgaI GACGC 1 cut(s) 2
HhaI GCGC 1 cut(s) 407
Hin1I GRCGYC 1 cut(s) 405
Hin1II CATG 1 cut(s) 335
Hin6I GCGC 1 cut(s) 405
HinP1I GCGC 1 cut(s) 405
HincII GTYRAC 1 cut(s) 520
HindII GTYRAC 1 cut(s) 520
HindIII AAGCTT 2 cut(s) 284, 573
HinfI GANTC 3 cut(s) 27, 46, 271
HpaII CCGG 3 cut(s) 303, 557, 892
HphI GGTGA 1 cut(s) 27
Hpy166II GTNNAC 4 cut(s) 183, 389, 520, 655
Hpy188I TCNGA 3 cut(s) 77, 247, 362
Hpy188III TCNNGA 3 cut(s) 24, 806, 892
Hpy8I GTNNAC 4 cut(s) 183, 389, 520, 655
Hpy99I CGWCG 1 cut(s) 279
HpyAV CCTTC 5 cut(s) 99, 105, 111, 172, 643
HpyCH4III ACNGT 3 cut(s) 198, 350, 644
HpyCH4IV ACGT 3 cut(s) 366, 733, 825
HpyCH4V TGCA 2 cut(s) 201, 416
HpyF10VI GCNNNNNNNGC 4 cut(s) 137, 413, 668, 677
HpyF3I CTNAG 3 cut(s) 9, 228, 768
HpySE526I ACGT 3 cut(s) 366, 733, 825
Hsp92I GRCGYC 1 cut(s) 405
Hsp92II CATG 1 cut(s) 335
HspAI GCGC 1 cut(s) 405
KasI GGCGCC 1 cut(s) 404
Kpn2I TCCGGA 1 cut(s) 891
KspI CCGCGG 1 cut(s) 213
Kzo9I GATC 2 cut(s) 327, 584
LmnI GCTCC 4 cut(s) 317, 784, 811, 894
Lsp1109I GCAGC 1 cut(s) 803
MaeI CTAG 1 cut(s) 922
MaeII ACGT 3 cut(s) 366, 733, 825
MaeIII GTNAC 1 cut(s) 539
MalI GATC 2 cut(s) 329, 586
MboI GATC 2 cut(s) 327, 584
MflI RGATCY 1 cut(s) 584
MhlI GDGCHC 3 cut(s) 314, 720, 816
MluCI AATT 2 cut(s) 354, 435
Mly113I GGCGCC 1 cut(s) 405
MmeI TCCRAC 1 cut(s) 339
MroI TCCGGA 1 cut(s) 891
MseI TTAA 2 cut(s) 345, 353
MspA1I CMGCKG 2 cut(s) 212, 485
MspI CCGG 3 cut(s) 303, 557, 892
MspR9I CCNGG 1 cut(s) 533
MvaI CCWGG 1 cut(s) 533
MvnI CGCG 1 cut(s) 212
MwoI GCNNNNNNNGC 4 cut(s) 137, 413, 668, 677
NarI GGCGCC 1 cut(s) 405
NdeII GATC 2 cut(s) 327, 584
NlaIII CATG 1 cut(s) 335
NlaIV GGNNCC 2 cut(s) 313, 406
NmeAIII GCCGAG 1 cut(s) 805
PceI AGGCCT 1 cut(s) 429
PfeI GAWTC 3 cut(s) 27, 46, 271
PflMI CCANNNNNTGG 1 cut(s) 623
PinAI ACCGGT 1 cut(s) 556
PkrI GCNGC 2 cut(s) 130, 793
PluTI GGCGCC 1 cut(s) 408
Ppu21I YACGTR 1 cut(s) 826
Psp6I CCWGG 1 cut(s) 531
PspGI CCWGG 1 cut(s) 531
PspN4I GGNNCC 2 cut(s) 313, 406
PspPI GGNCC 2 cut(s) 652, 692
PstNI CAGNNNCTG 1 cut(s) 16
PsuI RGATCY 1 cut(s) 584
PvuII CAGCTG 1 cut(s) 485
RsaI GTAC 1 cut(s) 824
RsaNI GTAC 1 cut(s) 823
SacII CCGCGG 1 cut(s) 213
SaqAI TTAA 2 cut(s) 345, 353
SatI GCNGC 2 cut(s) 129, 792
Sau3AI GATC 2 cut(s) 327, 584
Sau96I GGNCC 2 cut(s) 652, 692
ScrFI CCNGG 1 cut(s) 533
SduI GDGCHC 3 cut(s) 314, 720, 816
SfoI GGCGCC 1 cut(s) 406
Sfr303I CCGCGG 1 cut(s) 213
SgrBI CCGCGG 1 cut(s) 213
SinI GGWCC 1 cut(s) 652
SmlI CTYRAG 1 cut(s) 461
SmoI CTYRAG 1 cut(s) 461
Sse9I AATT 2 cut(s) 354, 435
SseBI AGGCCT 1 cut(s) 429
SsiI CCGC 5 cut(s) 126, 129, 210, 212, 306
SspDI GGCGCC 1 cut(s) 404
SspMI CTAG 1 cut(s) 922
StuI AGGCCT 1 cut(s) 429
StyD4I CCNGG 1 cut(s) 531
TaaI ACNGT 3 cut(s) 198, 350, 644
TaiI ACGT 3 cut(s) 369, 736, 828
TaqI TCGA 3 cut(s) 274, 326, 711
TasI AATT 2 cut(s) 354, 435
TauI GCSGC 1 cut(s) 131
TfiI GAWTC 3 cut(s) 27, 46, 271
Tru1I TTAA 2 cut(s) 345, 353
Tru9I TTAA 2 cut(s) 345, 353
TscAI CASTG 2 cut(s) 203, 781
TseI GCWGC 1 cut(s) 791
TspDTI ATGAA 2 cut(s) 348, 662
TspGWI ACGGA 4 cut(s) 292, 311, 486, 871
TspRI CASTG 2 cut(s) 203, 781
Van91I CCANNNNNTGG 1 cut(s) 623
VpaK11BI GGWCC 1 cut(s) 652
XmiI GTMKAC 1 cut(s) 182
XspI CTAG 1 cut(s) 922
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.