Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0002023

Physical Location & Seq

Genomic Coordinates Reverse (-)

49125 .. 50466

Gene Structure 1342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g00030.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGTCCCCCTACAGCATCATCAGTTATATTACAATAATATTAATATTAATAACACTGTGACTACCTGTAGCTGGGGAGGAGGAAGAGGAGGAGGATTTGGATTGGGTTATAGCAATCTTCATAGTGTTATCCTTTCTCCGGGTCATGGTTTTGCATATCATCAGATTCATCATCACACCCCTCCATTAGCCAAACATTCCGTTTCCGCTCTCCACGAAAGAAGAAAGTCAATTCCAGATTCCAATTCCAATTCGTTGCGTCGCCTTCTTATACCAAGAGGAAGAACAAGGAGGTGCTGTTTGTGGGCATCGCCCAAATTTAAATCCTGCGGTTGGGACATGGAATCATCATCGCCTGATCATGCTGCTAATAACAACAAGAAGCCTCGTAATAATCCAAATTTGATTACAACAAGCGATCACCTGCGGCATGTGGAGTCGATGGCCACAATGCCTTCCGGCGCCGGAAACATTTCGCACCTGAACGCTATCATTCTCGGAGAATCACTCGCCTCTGAAGAGAACGATATCGTCTTTCCCAGCGACCACTTCTCCTGTCAGGCTCACGTCTCCTCTCCCCAACAGTATCTGGAGATGTATAAACGGTCCATCGAGGACCCCGCGGGATTTTGGTCCGACATCGCTTCCACCTTCTTTTGGAAACAGAAATGGGGCAAACCAGTCTACTCGGAGAATCTCGATATCAGGAAAGGCGATATCCGAATTGAGTGGTTCAAGGGCGGTCTCACCAACATCTGCTACAACTGCCTTGACACAAATGTTGAAGCTGGACTTGGCGACAAAATTGCCTTCTACTGGGAAGGCAATGATCTTGGTGTTGACGCCACTTTAACTTACACCCAGCTTCTCCACAACGTTTGCCAGCTTGCAAACTATTTGAAAGATGTTGGAGTTAAAAAGGGTGATGCTGTTGTGGTTTACCTGCCCATGTTAATGGAACTTCCAATCACAATGCTTGCCTGTGCTCGAATTGGTGCCGTTCACTCGGTGTTGCACCATCTTTCTGTTTGCTTTCCAGCATCCCAATGCTTTCTTTTTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003987 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006082 GO:0006083 GO:0008150 GO:0008152 GO:0009507 GO:0009514 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0016999 GO:0017144 GO:0019752 GO:0032787 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00010 ko00620 ko00640 ko00680 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00620 map00640 map00680 map00720 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

ACAS_N AMP-binding AMP-binding_C

Protein Analysis

355

Amino Acids

39.48

Weight (kDa)

8.0

Isoelectric Point (pI)

47.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36880 AT5G36880 AT5G36880 AT5G36880 AT5G36880 AT5G36880
fragaria_vesca	FvH4_6g54480 FvH4_6g54480 FvH4_6g54480 FvH4_6g54480 FvH4_6g54480 FvH4_6g54480 FvH4_6g54480 FvH4_6g54480 FvH4_6g54480 FvH4_6g54480 FvH4_6g54480 FvH4_6g54480 FvH4_6g54480 FvH4_6g54480 FvH4_6g54480 FvH4_6g54480 FvH4_6g54480 FvH4_6g54480
malus_domestica	MD09G1000400.v1.1 MD17G1003300.v1.1
prunus_persica	Prupe.3G315800_v2.0.a1
pyrus_communis	pycom111g00030 pycom17g00010
rosa_chinensis	RchiOBHm_Chr2g0176771
rosa_multiflora	Rmu_sc0020992.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076170
rosa_rugosa	Rorug02G0598400 Rorug02G0598500 Rorug02G0598600 Rorug02G0598700 Rorug02G0598800 Rorug02G0598900 Rorug02G0599000 Rorug02G0599100 Rorug02G0599200
rosa_samantha	Rh2AG676000 Rh2BG687100 Rh2CG650500
rosa_wichuraiana	Rw2G055470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	432
Acc36I	ACCTGC	2 cut(s)	432, 951
AccB1I	GGYRCC	2 cut(s)	461, 995
AccBSI	CCGCTC	1 cut(s)	209
AccI	GTMKAC	1 cut(s)	684
AccII	CGCG	1 cut(s)	623
AciI	CCGC	6 cut(s)	207, 330, 427, 621, 623, 741
AclI	AACGTT	1 cut(s)	876
AcoI	YGGCCR	1 cut(s)	444
AcsI	RAATTY	2 cut(s)	317, 400
AcuI	CTGAAG	1 cut(s)	537
AcyI	GRCGYC	2 cut(s)	462, 843
AdeI	CACNNNGTG	1 cut(s)	1009
AfiI	CCNNNNNNNGG	6 cut(s)	72, 139, 146, 333, 657, 816
AgsI	TTSAA	3 cut(s)	736, 785, 901
AjiI	CACGTC	1 cut(s)	568
AjuI	GAANNNNNNNTTGG	2 cut(s)	777, 809
AluBI	AGCT	4 cut(s)	72, 788, 865, 886
AluI	AGCT	4 cut(s)	72, 788, 865, 886
Alw21I	GWGCWC	1 cut(s)	988
Alw26I	GTCTC	2 cut(s)	574, 749
AlwNI	CAGNNNCTG	1 cut(s)	589
AoxI	GGCC	1 cut(s)	444
ApeKI	GCWGC	1 cut(s)	365
ApoI	RAATTY	2 cut(s)	317, 400
AseI	ATTAAT	2 cut(s)	42, 48
Asp700I	GAANNNNTTC	1 cut(s)	472
AspLEI	GCGC	1 cut(s)	464
AspS9I	GGNCC	4 cut(s)	4, 606, 616, 633
AsuC2I	CCSGG	1 cut(s)	141
AsuHPI	GGTGA	3 cut(s)	413, 739, 935
AvaII	GGWCC	4 cut(s)	4, 606, 616, 633
BalI	TGGCCA	1 cut(s)	446
BanI	GGYRCC	2 cut(s)	461, 995
Bbv12I	GWGCWC	1 cut(s)	988
BbvI	GCAGC	1 cut(s)	352
BccI	CCATC	3 cut(s)	436, 617, 1026
BceAI	ACGGC	1 cut(s)	983
BcgI	CGANNNNNNTGC	2 cut(s)	788, 822
BclI	TGATCA	1 cut(s)	358
BcnI	CCSGG	1 cut(s)	141
BcoDI	GTCTC	2 cut(s)	574, 749
BfmI	CTRYAG	2 cut(s)	11, 67
BfoI	RGCGCY	1 cut(s)	465
BfuAI	ACCTGC	2 cut(s)	432, 951
BisI	GCNGC	2 cut(s)	366, 428
BlsI	GCNGC	2 cut(s)	367, 429
Bme1390I	CCNGG	1 cut(s)	141
Bme18I	GGWCC	4 cut(s)	4, 606, 616, 633
BmgBI	CACGTC	1 cut(s)	568
BmgT120I	GGNCC	4 cut(s)	4, 606, 616, 633
BmiI	GGNNCC	4 cut(s)	6, 463, 618, 997
BmrFI	CCNGG	1 cut(s)	141
BmrI	ACTGGG	1 cut(s)	826
BmsI	GCATC	4 cut(s)	25, 317, 916, 1049
BmuI	ACTGGG	1 cut(s)	826
BplI	GAGNNNNNCTC	2 cut(s)	492, 524
BpmI	CTGGAG	1 cut(s)	611
BpuMI	CCSGG	1 cut(s)	141
BsaHI	GRCGYC	2 cut(s)	462, 843
BsaI	GGTCTC	1 cut(s)	749
BsaJI	CCNNGG	1 cut(s)	621
BsaXI	ACNNNNNCTCC	4 cut(s)	283, 313, 536, 566
Bsc4I	CCNNNNNNNGG	6 cut(s)	72, 139, 146, 333, 657, 816
Bse1I	ACTGG	2 cut(s)	680, 821
Bse3DI	GCAATG	1 cut(s)	832
BseDI	CCNNGG	1 cut(s)	621
BseGI	GGATG	1 cut(s)	1040
BseLI	CCNNNNNNNGG	6 cut(s)	72, 139, 146, 333, 657, 816
BseMI	GCAATG	1 cut(s)	832
BseNI	ACTGG	2 cut(s)	680, 821
BseRI	GAGGAG	4 cut(s)	93, 102, 105, 562
BseXI	GCAGC	1 cut(s)	352
BseYI	CCCAGC	3 cut(s)	72, 539, 861
Bsh1236I	CGCG	1 cut(s)	623
BshFI	GGCC	1 cut(s)	446
BshNI	GGYRCC	2 cut(s)	461, 995
BsiHKAI	GWGCWC	1 cut(s)	988
BsiSI	CCGG	3 cut(s)	140, 459, 465
BslFI	GGGAC	1 cut(s)	350
BslI	CCNNNNNNNGG	6 cut(s)	72, 139, 146, 333, 657, 816
BsmAI	GTCTC	2 cut(s)	574, 749
BsmBI	CGTCTC	1 cut(s)	574
BsmFI	GGGAC	1 cut(s)	350
BsnI	GGCC	1 cut(s)	446
Bso31I	GGTCTC	1 cut(s)	749
Bsp1286I	GDGCHC	1 cut(s)	988
Bsp143I	GATC	3 cut(s)	358, 418, 829
BspACI	CCGC	6 cut(s)	207, 330, 427, 621, 623, 741
BspANI	GGCC	1 cut(s)	446
BspFNI	CGCG	1 cut(s)	623
BspLI	GGNNCC	4 cut(s)	6, 463, 618, 997
BspMI	ACCTGC	2 cut(s)	432, 951
BspT107I	GGYRCC	2 cut(s)	461, 995
BspTNI	GGTCTC	1 cut(s)	749
BsrBI	CCGCTC	1 cut(s)	209
BsrDI	GCAATG	1 cut(s)	832
BsrI	ACTGG	2 cut(s)	680, 821
BssECI	CCNNGG	1 cut(s)	621
BssMI	GATC	3 cut(s)	358, 418, 829
BssNI	GRCGYC	2 cut(s)	462, 843
Bst4CI	ACNGT	3 cut(s)	58, 585, 606
Bst6I	CTCTTC	2 cut(s)	79, 513
BstACI	GRCGYC	2 cut(s)	462, 843
BstC8I	GCNNGC	3 cut(s)	884, 888, 978
BstDSI	CCRYGG	1 cut(s)	621
BstF5I	GGATG	1 cut(s)	1040
BstFNI	CGCG	1 cut(s)	623
BstH2I	RGCGCY	1 cut(s)	465
BstHHI	GCGC	1 cut(s)	464
BstKTI	GATC	3 cut(s)	361, 421, 832
BstMAI	GTCTC	2 cut(s)	574, 749
BstMBI	GATC	3 cut(s)	358, 418, 829
BstMWI	GCNNNNNNNGC	1 cut(s)	765
BstNSI	RCATGY	1 cut(s)	434
BstSCI	CCNGG	1 cut(s)	139
BstSFI	CTRYAG	2 cut(s)	11, 67
BstUI	CGCG	1 cut(s)	623
BstV1I	GCAGC	1 cut(s)	352
BstXI	CCANNNNNNTGG	1 cut(s)	955
BsuRI	GGCC	1 cut(s)	446
BtgI	CCRYGG	1 cut(s)	621
BtgZI	GCGATG	3 cut(s)	294, 336, 625
BtrI	CACGTC	1 cut(s)	568
BtsCI	GGATG	1 cut(s)	1040
BtsIMutI	CAGTG	1 cut(s)	54
BveI	ACCTGC	2 cut(s)	432, 951
Cac8I	GCNNGC	3 cut(s)	884, 888, 978
CaiI	CAGNNNCTG	1 cut(s)	589
CfoI	GCGC	1 cut(s)	464
Cfr13I	GGNCC	4 cut(s)	4, 606, 616, 633
Cfr42I	CCGCGG	1 cut(s)	624
CseI	GACGC	2 cut(s)	248, 851
CspCI	CAANNNNNGTGG	2 cut(s)	860, 895
CviAII	CATG	5 cut(s)	146, 340, 362, 431, 949
CviJI	RGCY	8 cut(s)	72, 191, 385, 446, 563, 788, 865, 886
CviKI_1	RGCY	8 cut(s)	72, 191, 385, 446, 563, 788, 865, 886
DinI	GGCGCC	1 cut(s)	463
DpnI	GATC	3 cut(s)	360, 420, 831
DpnII	GATC	3 cut(s)	358, 418, 829
DraI	TTTAAA	1 cut(s)	322
DraIII	CACNNNGTG	1 cut(s)	1009
EaeI	YGGCCR	1 cut(s)	444
Eam1104I	CTCTTC	2 cut(s)	79, 513
EarI	CTCTTC	2 cut(s)	79, 513
Eco31I	GGTCTC	1 cut(s)	749
Eco32I	GATATC	3 cut(s)	529, 703, 718
Eco47I	GGWCC	4 cut(s)	4, 606, 616, 633
Eco57I	CTGAAG	1 cut(s)	537
EcoO109I	RGGNCCY	1 cut(s)	616
EcoRV	GATATC	3 cut(s)	529, 703, 718
EgeI	GGCGCC	1 cut(s)	463
EheI	GGCGCC	1 cut(s)	463
Esp3I	CGTCTC	1 cut(s)	574
FaeI	CATG	5 cut(s)	149, 343, 365, 434, 952
FalI	AAGNNNNNCTT	2 cut(s)	777, 809
FaqI	GGGAC	1 cut(s)	350
FatI	CATG	5 cut(s)	145, 339, 361, 430, 948
FauI	CCCGC	2 cut(s)	616, 628
FbaI	TGATCA	1 cut(s)	358
FblI	GTMKAC	1 cut(s)	684
Fnu4HI	GCNGC	2 cut(s)	366, 428
FokI	GGATG	1 cut(s)	1027
Fsp4HI	GCNGC	2 cut(s)	366, 428
GlaI	GCGC	1 cut(s)	463
GluI	GCNGC	2 cut(s)	366, 428
GsaI	CCCAGC	3 cut(s)	76, 543, 865
GsuI	CTGGAG	1 cut(s)	611
HaeII	RGCGCY	1 cut(s)	465
HaeIII	GGCC	1 cut(s)	446
HapII	CCGG	3 cut(s)	140, 459, 465
HgaI	GACGC	2 cut(s)	248, 851
HhaI	GCGC	1 cut(s)	464
Hin1I	GRCGYC	2 cut(s)	462, 843
Hin1II	CATG	5 cut(s)	149, 343, 365, 434, 952
Hin6I	GCGC	1 cut(s)	462
HinP1I	GCGC	1 cut(s)	462
HincII	GTYRAC	1 cut(s)	841
HindII	GTYRAC	1 cut(s)	841
HinfI	GANTC	6 cut(s)	166, 239, 344, 437, 503, 694
HpaII	CCGG	3 cut(s)	140, 459, 465
HphI	GGTGA	3 cut(s)	413, 739, 935
Hpy166II	GTNNAC	4 cut(s)	685, 841, 940, 1003
Hpy188I	TCNGA	6 cut(s)	165, 500, 517, 637, 691, 722
Hpy188III	TCNNGA	4 cut(s)	236, 590, 698, 706
Hpy8I	GTNNAC	4 cut(s)	685, 841, 940, 1003
Hpy99I	CGWCG	1 cut(s)	264
HpyAV	CCTTC	5 cut(s)	275, 465, 661, 815, 820
HpyCH4III	ACNGT	3 cut(s)	58, 585, 606
HpyCH4IV	ACGT	2 cut(s)	567, 876
HpyCH4V	TGCA	3 cut(s)	155, 890, 1015
HpyF10VI	GCNNNNNNNGC	1 cut(s)	765
HpySE526I	ACGT	2 cut(s)	567, 876
Hsp92I	GRCGYC	2 cut(s)	462, 843
Hsp92II	CATG	5 cut(s)	149, 343, 365, 434, 952
HspAI	GCGC	1 cut(s)	462
KasI	GGCGCC	1 cut(s)	461
Ksp22I	TGATCA	1 cut(s)	358
KspI	CCGCGG	1 cut(s)	624
Kzo9I	GATC	3 cut(s)	358, 418, 829
Lsp1109I	GCAGC	1 cut(s)	352
LweI	GCATC	4 cut(s)	25, 317, 916, 1049
MaeII	ACGT	2 cut(s)	567, 876
MaeIII	GTNAC	1 cut(s)	58
MalI	GATC	3 cut(s)	360, 420, 831
MbiI	CCGCTC	1 cut(s)	209
MboI	GATC	3 cut(s)	358, 418, 829
MboII	GAAGA	5 cut(s)	96, 110, 234, 294, 530
MhlI	GDGCHC	1 cut(s)	988
MlsI	TGGCCA	1 cut(s)	446
MluCI	AATT	8 cut(s)	231, 244, 250, 317, 400, 723, 804, 990
MluNI	TGGCCA	1 cut(s)	446
Mly113I	GGCGCC	1 cut(s)	462
MlyI	GAGTC	1 cut(s)	446
MmeI	TCCRAC	2 cut(s)	660, 889
Mox20I	TGGCCA	1 cut(s)	446
MroXI	GAANNNNTTC	1 cut(s)	472
MscI	TGGCCA	1 cut(s)	446
MseI	TTAA	6 cut(s)	42, 48, 321, 851, 915, 953
MslI	CAYNNNNRTG	2 cut(s)	953, 1045
Msp20I	TGGCCA	1 cut(s)	446
MspA1I	CMGCKG	1 cut(s)	623
MspI	CCGG	3 cut(s)	140, 459, 465
MspR9I	CCNGG	1 cut(s)	141
MvnI	CGCG	1 cut(s)	623
MwoI	GCNNNNNNNGC	1 cut(s)	765
NarI	GGCGCC	1 cut(s)	462
NciI	CCSGG	1 cut(s)	141
NdeII	GATC	3 cut(s)	358, 418, 829
NlaIII	CATG	5 cut(s)	149, 343, 365, 434, 952
NlaIV	GGNNCC	4 cut(s)	6, 463, 618, 997
NmuCI	GTSAC	1 cut(s)	58
NspI	RCATGY	1 cut(s)	434
PaqCI	CACCTGC	1 cut(s)	432
PdmI	GAANNNNTTC	1 cut(s)	472
PfeI	GAWTC	5 cut(s)	166, 239, 344, 503, 694
PkrI	GCNGC	2 cut(s)	367, 429
PleI	GAGTC	1 cut(s)	445
PluTI	GGCGCC	1 cut(s)	465
PpsI	GAGTC	1 cut(s)	445
PpuMI	RGGWCCY	1 cut(s)	616
PshBI	ATTAAT	2 cut(s)	42, 48
Psp1406I	AACGTT	1 cut(s)	876
Psp5II	RGGWCCY	1 cut(s)	616
PspFI	CCCAGC	3 cut(s)	72, 539, 861
PspN4I	GGNNCC	4 cut(s)	6, 463, 618, 997
PspPI	GGNCC	4 cut(s)	4, 606, 616, 633
PspPPI	RGGWCCY	1 cut(s)	616
PstNI	CAGNNNCTG	1 cut(s)	589
RseI	CAYNNNNRTG	2 cut(s)	953, 1045
SacII	CCGCGG	1 cut(s)	624
SaqAI	TTAA	6 cut(s)	42, 48, 321, 851, 915, 953
SatI	GCNGC	2 cut(s)	366, 428
Sau3AI	GATC	3 cut(s)	358, 418, 829
Sau96I	GGNCC	4 cut(s)	4, 606, 616, 633
SchI	GAGTC	1 cut(s)	446
ScrFI	CCNGG	1 cut(s)	141
SduI	GDGCHC	1 cut(s)	988
SfaNI	GCATC	4 cut(s)	25, 317, 916, 1049
SfcI	CTRYAG	2 cut(s)	11, 67
SfoI	GGCGCC	1 cut(s)	463
Sfr303I	CCGCGG	1 cut(s)	624
SgrBI	CCGCGG	1 cut(s)	624
SinI	GGWCC	4 cut(s)	4, 606, 616, 633
SmiI	ATTTAAAT	1 cut(s)	322
SmiMI	CAYNNNNRTG	2 cut(s)	953, 1045
Sse9I	AATT	8 cut(s)	231, 244, 250, 317, 400, 723, 804, 990
SsiI	CCGC	6 cut(s)	207, 330, 427, 621, 623, 741
SspDI	GGCGCC	1 cut(s)	461
SspI	AATATT	2 cut(s)	40, 46
StyD4I	CCNGG	1 cut(s)	139
SwaI	ATTTAAAT	1 cut(s)	322
TaaI	ACNGT	3 cut(s)	58, 585, 606
TaiI	ACGT	2 cut(s)	570, 879
TaqI	TCGA	4 cut(s)	440, 612, 699, 988
TasI	AATT	8 cut(s)	231, 244, 250, 317, 400, 723, 804, 990
TauI	GCSGC	1 cut(s)	430
TfiI	GAWTC	5 cut(s)	166, 239, 344, 503, 694
Tru1I	TTAA	6 cut(s)	42, 48, 321, 851, 915, 953
Tru9I	TTAA	6 cut(s)	42, 48, 321, 851, 915, 953
TscAI	CASTG	1 cut(s)	61
TseFI	GTSAC	1 cut(s)	58
TseI	GCWGC	1 cut(s)	365
Tsp45I	GTSAC	1 cut(s)	58
TspDTI	ATGAA	3 cut(s)	110, 158, 1050
TspGWI	ACGGA	1 cut(s)	190
TspRI	CASTG	1 cut(s)	61
VpaK11BI	GGWCC	4 cut(s)	4, 606, 616, 633
VspI	ATTAAT	2 cut(s)	42, 48
XapI	RAATTY	2 cut(s)	317, 400
XceI	RCATGY	1 cut(s)	434
XmiI	GTMKAC	1 cut(s)	684
XmnI	GAANNNNTTC	1 cut(s)	472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.