Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002023

Physical Location & Seq

Genomic Coordinates Reverse (-)

71936569 .. 71938083

Gene Structure 1515 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0599200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1515 bp

ATGAAGATGATGGGTGAAATGTTTGCTCAATTAGGCTCTCTGATTGCCACTGTGATGTTTGTTTATACAATATGTAAACAATACTTGCCCTACAATCTCCAGGGCCTTGTTGTAACATATAGCCACAAATTGTTTGGATTTGTGTACCCTTACATCCAAATCACCTTTGATGAATATGCTGATGATTTTCGCAAACGCAGCGAGGTTTACTCTGCTATCCAGAGCTACCTCAGCACCAAGTCATCAACAACAGCGAAACGACTGAAAGCTCATGATGTCAAGGGGAGCAGCACCCTGGTTCTCGGCATGGCGGATAATGAAGAAGTTACTGAGGATTTTCGAGGGATCAAGCTCTGGTGGGCTTCTATGAAAGACTCGTCCAAAAAGAACTCCTTTTCTTTCAATCCTGAGTATGATGAGAAGAGATATTTCAAACTAACTTTCCACAGACAACATAGGGATGTGATCATGGGGTGTTATCTTGATCATGTTAGGAAAGAAGGGAAGGAGATTGCGATGAGGAATAGACAAAGAAAGCTTTACATCAACAACAGCGGCAAAGGGAAGTGGAGTCATGTGGTGTTTGAGCACCCTGCAACATTTGAGACTTTGGCAATGGACCCAAACAAGAAAGATGAAATACTGAATGATCTGGTGAAGTTTAGCGCTGGGAAAGAGTACTATGCTAAAATCGGGAAGGCTTGGAAGCGAGGCTATCTTCTATATGGGCCACCAGGAACTGGAAAGTCAACCATGATTGCTGCAATGTCTAACCTCATGAACTATGATGTTTATGATCTTGAGTTGACGGCTGTCAAGGATAACACTGAATTGAGGAAGCTGTTGATTGACATAACAGGGAAGTCGATTATCGTGATTGAAGACATTGATTGCTCGCTTGATCTTACTGGTCAAAGAAAGAAGAAAAAAGAGAAGGAGGAGGAAGATAAGGAAGAAAAGGACCCGATTCGGAAAATGAGTGGAGAAGAAGAAACCACAACCAGCAAGGTTACTTTGTCAGGGCTGTTGAACTTTATTGATGGGATTTGGTCAGCTTGTGGAGGTGAAAGATTGATCGTGTTTACTACTAACTATGTGGACAAGCTTGATCCTGCTCTTATAAGAAGAGGAAGGATGGACAAGCATGTTGAGTTGTCTTACTGTTGCTATGAATCATTCAAAGTGCTTGTTAGGAACTATTTGGATTTGGAGTCGCATAAACTGTTTGGAAGCATTCAACGGTTGTTGGGGGAGACTAATATGACTCCTGCTGATGTTGCTGAGAACTTGATGCCGAAATCTGTTTTTGAAGACGCTGATTCTTGTTTGAAGAACTTGATTGAAGCACTCGAGGCTGCGAAGGAGGAGACAAGGGTGAAGGCAGAGGAAGAAGCAAAATTGAAAGCAGAGAAGGAAGCAAAGGAGAAACATGAGACTGCTAATGAGCAAGTCAAATGTAATGGAACATCAGCTGAAGGAAGATTATGTGAAGAAGTTAAAGAAAATGGTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003987 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006082 GO:0006083 GO:0008150 GO:0008152 GO:0009507 GO:0009514 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0016999 GO:0017144 GO:0019752 GO:0032787 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00010 ko00620 ko00640 ko00680 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00620 map00640 map00680 map00720 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

ACAS_N AMP-binding AMP-binding_C

Protein Analysis

504

Amino Acids

57.7

Weight (kDa)

6.6

Isoelectric Point (pI)

33.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_assoc	PF14363	29 - 123	4.1e-24	Domain associated at C-terminal with AAA
AAA	PF00004	239 - 386	9.3e-17	ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540	PF25568	388 - 461	2.1e-32	At3g28540-like, AAA+ ATPase lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36880 AT5G36880 AT5G36880 AT5G36880 AT5G36880 AT5G36880
fragaria_vesca	FvH4_6g54480 FvH4_6g54480 FvH4_6g54480 FvH4_6g54480 FvH4_6g54480 FvH4_6g54480 FvH4_6g54480 FvH4_6g54480 FvH4_6g54480 FvH4_6g54480 FvH4_6g54480 FvH4_6g54480 FvH4_6g54480 FvH4_6g54480 FvH4_6g54480 FvH4_6g54480 FvH4_6g54480 FvH4_6g54480
malus_domestica	MD09G1000400.v1.1 MD17G1003300.v1.1
prunus_persica	Prupe.3G315800_v2.0.a1
pyrus_communis	pycom111g00030 pycom17g00010
rosa_chinensis	RchiOBHm_Chr2g0176771
rosa_multiflora	Rmu_sc0020992.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076170
rosa_rugosa	Rorug02G0598400 Rorug02G0598500 Rorug02G0598600 Rorug02G0598700 Rorug02G0598800 Rorug02G0598900 Rorug02G0599000 Rorug02G0599100 Rorug02G0599200
rosa_samantha	Rh2AG676000 Rh2BG687100 Rh2CG650500
rosa_wichuraiana	Rw2G055470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1121
AccB7I	CCANNNNNTGG	1 cut(s)	740
AciI	CCGC	2 cut(s)	311, 555
AclWI	GGATC	2 cut(s)	353, 1103
AcuI	CTGAAG	1 cut(s)	1494
AfaI	GTAC	2 cut(s)	146, 680
AfeI	AGCGCT	1 cut(s)	667
AfiI	CCNNNNNNNGG	1 cut(s)	740
AjnI	CCWGG	3 cut(s)	99, 294, 733
AluBI	AGCT	8 cut(s)	225, 269, 352, 538, 841, 1055, 1105, 1472
AluI	AGCT	8 cut(s)	225, 269, 352, 538, 841, 1055, 1105, 1472
Alw21I	GWGCWC	1 cut(s)	591
Alw26I	GTCTC	4 cut(s)	599, 1247, 1361, 1427
AlwI	GGATC	2 cut(s)	353, 1103
AlwNI	CAGNNNCTG	1 cut(s)	740
Ama87I	CYCGRG	1 cut(s)	1349
Aor51HI	AGCGCT	1 cut(s)	667
AoxI	GGCC	2 cut(s)	103, 728
ApeKI	GCWGC	4 cut(s)	198, 288, 761, 1355
AspLEI	GCGC	1 cut(s)	668
AspS9I	GGNCC	4 cut(s)	103, 619, 728, 961
AsuHPI	GGTGA	5 cut(s)	26, 154, 667, 1076, 1387
AvaI	CYCGRG	1 cut(s)	1349
AvaII	GGWCC	2 cut(s)	619, 961
BbsI	GAAGAC	2 cut(s)	888, 1317
Bbv12I	GWGCWC	1 cut(s)	591
BbvCI	CCTCAGC	1 cut(s)	230
BbvI	GCAGC	4 cut(s)	210, 300, 748, 1342
BccI	CCATC	3 cut(s)	4, 1034, 1129
BceAI	ACGGC	1 cut(s)	825
BciT130I	CCWGG	3 cut(s)	101, 296, 735
BclI	TGATCA	2 cut(s)	465, 484
BcoDI	GTCTC	4 cut(s)	599, 1247, 1361, 1427
BfoI	RGCGCY	1 cut(s)	669
BisI	GCNGC	5 cut(s)	199, 289, 556, 762, 1356
BlsI	GCNGC	5 cut(s)	200, 290, 557, 763, 1357
BmcAI	AGTACT	1 cut(s)	680
Bme1390I	CCNGG	3 cut(s)	101, 296, 735
Bme18I	GGWCC	2 cut(s)	619, 961
BmeT110I	CYCGRG	1 cut(s)	1349
BmgT120I	GGNCC	4 cut(s)	103, 619, 728, 961
BmiI	GGNNCC	2 cut(s)	621, 963
BmrFI	CCNGG	3 cut(s)	101, 296, 735
BmsI	GCATC	1 cut(s)	1281
BoxI	GACNNNNGTC	1 cut(s)	812
BpiI	GAAGAC	2 cut(s)	888, 1317
BplI	GAGNNNNNCTC	2 cut(s)	194, 226
BpmI	CTGGAG	1 cut(s)	83
Bpu10I	CCTNAGC	1 cut(s)	230
BpuEI	CTTGAG	1 cut(s)	821
BsaJI	CCNNGG	2 cut(s)	100, 294
Bsc4I	CCNNNNNNNGG	1 cut(s)	740
Bse1I	ACTGG	2 cut(s)	745, 913
Bse3DI	GCAATG	2 cut(s)	621, 771
BseBI	CCWGG	3 cut(s)	101, 296, 735
BseDI	CCNNGG	2 cut(s)	100, 294
BseGI	GGATG	3 cut(s)	153, 466, 1140
BseLI	CCNNNNNNNGG	1 cut(s)	740
BseMI	GCAATG	2 cut(s)	621, 771
BseMII	CTCAG	4 cut(s)	244, 321, 399, 1272
BseNI	ACTGG	2 cut(s)	745, 913
BseRI	GAGGAG	2 cut(s)	953, 1379
BseXI	GCAGC	4 cut(s)	210, 300, 748, 1342
BseYI	CCCAGC	1 cut(s)	668
BshFI	GGCC	2 cut(s)	105, 730
BsiHKAI	GWGCWC	1 cut(s)	591
BsiHKCI	CYCGRG	1 cut(s)	1349
BslI	CCNNNNNNNGG	1 cut(s)	740
BsmAI	GTCTC	4 cut(s)	599, 1247, 1361, 1427
BsmI	GAATGC	1 cut(s)	1233
BsnI	GGCC	2 cut(s)	105, 730
BsoBI	CYCGRG	1 cut(s)	1349
Bsp1286I	GDGCHC	1 cut(s)	591
Bsp143I	GATC	8 cut(s)	345, 465, 484, 649, 796, 901, 1074, 1108
BspACI	CCGC	2 cut(s)	311, 555
BspANI	GGCC	2 cut(s)	105, 730
BspCNI	CTCAG	4 cut(s)	243, 322, 400, 1273
BspHI	TCATGA	2 cut(s)	271, 777
BspLI	GGNNCC	2 cut(s)	621, 963
BspPI	GGATC	2 cut(s)	353, 1103
BsrDI	GCAATG	2 cut(s)	621, 771
BsrI	ACTGG	2 cut(s)	745, 913
BssECI	CCNNGG	2 cut(s)	100, 294
BssMI	GATC	8 cut(s)	345, 465, 484, 649, 796, 901, 1074, 1108
Bst2UI	CCWGG	3 cut(s)	101, 296, 735
Bst4CI	ACNGT	4 cut(s)	52, 1163, 1224, 1242
Bst6I	CTCTTC	2 cut(s)	416, 1120
BstC8I	GCNNGC	1 cut(s)	896
BstDEI	CTNAG	4 cut(s)	230, 330, 408, 1281
BstF5I	GGATG	3 cut(s)	153, 466, 1140
BstH2I	RGCGCY	1 cut(s)	669
BstHHI	GCGC	1 cut(s)	668
BstKTI	GATC	8 cut(s)	348, 468, 487, 652, 799, 904, 1077, 1111
BstMAI	GTCTC	4 cut(s)	599, 1247, 1361, 1427
BstMBI	GATC	8 cut(s)	345, 465, 484, 649, 796, 901, 1074, 1108
BstMWI	GCNNNNNNNGC	4 cut(s)	198, 231, 1277, 1352
BstNI	CCWGG	3 cut(s)	101, 296, 735
BstNSI	RCATGY	1 cut(s)	1148
BstPAI	GACNNNNGTC	1 cut(s)	812
BstSCI	CCNGG	3 cut(s)	99, 294, 733
BstV1I	GCAGC	4 cut(s)	210, 300, 748, 1342
BstV2I	GAAGAC	2 cut(s)	888, 1317
BsuRI	GGCC	2 cut(s)	105, 730
BtgZI	GCGATG	1 cut(s)	530
BtsCI	GGATG	3 cut(s)	153, 466, 1140
BtsIMutI	CAGTG	2 cut(s)	48, 825
Cac8I	GCNNGC	1 cut(s)	896
CaiI	CAGNNNCTG	1 cut(s)	740
CciI	TCATGA	2 cut(s)	271, 777
CfoI	GCGC	1 cut(s)	668
Cfr13I	GGNCC	4 cut(s)	103, 619, 728, 961
CseI	GACGC	1 cut(s)	1322
Csp6I	GTAC	2 cut(s)	145, 679
CviAII	CATG	9 cut(s)	272, 307, 469, 488, 575, 754, 778, 1145, 1430
CviQI	GTAC	2 cut(s)	145, 679
DdeI	CTNAG	4 cut(s)	230, 330, 408, 1281
DpnI	GATC	8 cut(s)	347, 467, 486, 651, 798, 903, 1076, 1110
DpnII	GATC	8 cut(s)	345, 465, 484, 649, 796, 901, 1074, 1108
Eam1104I	CTCTTC	2 cut(s)	416, 1120
EarI	CTCTTC	2 cut(s)	416, 1120
EciI	GGCGGA	1 cut(s)	326
Eco47I	GGWCC	2 cut(s)	619, 961
Eco47III	AGCGCT	1 cut(s)	667
Eco57I	CTGAAG	1 cut(s)	1494
Eco88I	CYCGRG	1 cut(s)	1349
EcoO109I	RGGNCCY	2 cut(s)	103, 961
EcoRII	CCWGG	3 cut(s)	99, 294, 733
FaeI	CATG	9 cut(s)	275, 310, 472, 491, 578, 757, 781, 1148, 1433
FalI	AAGNNNNNCTT	2 cut(s)	377, 409
FatI	CATG	9 cut(s)	271, 306, 468, 487, 574, 753, 777, 1144, 1429
FbaI	TGATCA	2 cut(s)	465, 484
Fnu4HI	GCNGC	5 cut(s)	199, 289, 556, 762, 1356
FokI	GGATG	3 cut(s)	140, 473, 1147
Fsp4HI	GCNGC	5 cut(s)	199, 289, 556, 762, 1356
GlaI	GCGC	1 cut(s)	667
GluI	GCNGC	5 cut(s)	199, 289, 556, 762, 1356
GsaI	CCCAGC	1 cut(s)	672
GsuI	CTGGAG	1 cut(s)	83
HaeII	RGCGCY	1 cut(s)	669
HaeIII	GGCC	2 cut(s)	105, 730
HgaI	GACGC	1 cut(s)	1322
HhaI	GCGC	1 cut(s)	668
Hin1II	CATG	9 cut(s)	275, 310, 472, 491, 578, 757, 781, 1148, 1433
Hin6I	GCGC	1 cut(s)	666
HinP1I	GCGC	1 cut(s)	666
HincII	GTYRAC	2 cut(s)	750, 807
HindII	GTYRAC	2 cut(s)	750, 807
HindIII	AAGCTT	2 cut(s)	536, 1103
HinfI	GANTC	7 cut(s)	374, 571, 967, 1172, 1211, 1264, 1319
HphI	GGTGA	5 cut(s)	26, 154, 667, 1076, 1387
Hpy166II	GTNNAC	7 cut(s)	77, 145, 208, 750, 807, 1083, 1099
Hpy188I	TCNGA	3 cut(s)	42, 972, 1514
Hpy188III	TCNNGA	8 cut(s)	220, 272, 407, 482, 694, 778, 800, 874
Hpy8I	GTNNAC	7 cut(s)	77, 145, 208, 750, 807, 1083, 1099
HpyAV	CCTTC	9 cut(s)	494, 499, 691, 928, 1125, 1354, 1372, 1405, 1469
HpyCH4III	ACNGT	4 cut(s)	52, 1163, 1224, 1242
HpyCH4V	TGCA	2 cut(s)	596, 764
HpyF10VI	GCNNNNNNNGC	4 cut(s)	198, 231, 1277, 1352
HpyF3I	CTNAG	4 cut(s)	230, 330, 408, 1281
Hsp92II	CATG	9 cut(s)	275, 310, 472, 491, 578, 757, 781, 1148, 1433
HspAI	GCGC	1 cut(s)	666
Ksp22I	TGATCA	2 cut(s)	465, 484
Kzo9I	GATC	8 cut(s)	345, 465, 484, 649, 796, 901, 1074, 1108
LmnI	GCTCC	1 cut(s)	285
Lsp1109I	GCAGC	4 cut(s)	210, 300, 748, 1342
LweI	GCATC	1 cut(s)	1281
MaeIII	GTNAC	3 cut(s)	112, 325, 1009
MalI	GATC	8 cut(s)	347, 467, 486, 651, 798, 903, 1076, 1110
MboI	GATC	8 cut(s)	345, 465, 484, 649, 796, 901, 1074, 1108
MhlI	GDGCHC	1 cut(s)	591
MluCI	AATT	4 cut(s)	29, 128, 830, 1397
MlyI	GAGTC	4 cut(s)	368, 580, 1220, 1258
MseI	TTAA	1 cut(s)	1497
MslI	CAYNNNNRTG	2 cut(s)	53, 459
MspA1I	CMGCKG	2 cut(s)	555, 1472
MspR9I	CCNGG	3 cut(s)	101, 296, 735
Mva1269I	GAATGC	1 cut(s)	1233
MvaI	CCWGG	3 cut(s)	101, 296, 735
MwoI	GCNNNNNNNGC	4 cut(s)	198, 231, 1277, 1352
NdeII	GATC	8 cut(s)	345, 465, 484, 649, 796, 901, 1074, 1108
NlaIII	CATG	9 cut(s)	275, 310, 472, 491, 578, 757, 781, 1148, 1433
NlaIV	GGNNCC	2 cut(s)	621, 963
NmeAIII	GCCGAG	1 cut(s)	282
NspI	RCATGY	1 cut(s)	1148
PaeR7I	CTCGAG	1 cut(s)	1349
PagI	TCATGA	2 cut(s)	271, 777
PctI	GAATGC	1 cut(s)	1233
PfeI	GAWTC	3 cut(s)	967, 1172, 1319
PflMI	CCANNNNNTGG	1 cut(s)	740
PkrI	GCNGC	5 cut(s)	200, 290, 557, 763, 1357
PleI	GAGTC	4 cut(s)	368, 579, 1219, 1258
PpsI	GAGTC	4 cut(s)	368, 579, 1219, 1258
PpuMI	RGGWCCY	1 cut(s)	961
PshAI	GACNNNNGTC	1 cut(s)	812
PsiI	TTATAA	1 cut(s)	1121
Psp5II	RGGWCCY	1 cut(s)	961
Psp6I	CCWGG	3 cut(s)	99, 294, 733
PspFI	CCCAGC	1 cut(s)	668
PspGI	CCWGG	3 cut(s)	99, 294, 733
PspN4I	GGNNCC	2 cut(s)	621, 963
PspPI	GGNCC	4 cut(s)	103, 619, 728, 961
PspPPI	RGGWCCY	1 cut(s)	961
PspXI	VCTCGAGB	1 cut(s)	1349
PstNI	CAGNNNCTG	1 cut(s)	740
PvuII	CAGCTG	1 cut(s)	1472
RsaI	GTAC	2 cut(s)	146, 680
RsaNI	GTAC	2 cut(s)	145, 679
RseI	CAYNNNNRTG	2 cut(s)	53, 459
SaqAI	TTAA	1 cut(s)	1497
SatI	GCNGC	5 cut(s)	199, 289, 556, 762, 1356
Sau3AI	GATC	8 cut(s)	345, 465, 484, 649, 796, 901, 1074, 1108
Sau96I	GGNCC	4 cut(s)	103, 619, 728, 961
ScaI	AGTACT	1 cut(s)	680
SchI	GAGTC	4 cut(s)	368, 580, 1220, 1258
ScrFI	CCNGG	3 cut(s)	101, 296, 735
SduI	GDGCHC	1 cut(s)	591
SfaNI	GCATC	1 cut(s)	1281
Sfr274I	CTCGAG	1 cut(s)	1349
SinI	GGWCC	2 cut(s)	619, 961
SlaI	CTCGAG	1 cut(s)	1349
SmiMI	CAYNNNNRTG	2 cut(s)	53, 459
SmlI	CTYRAG	2 cut(s)	800, 1349
SmoI	CTYRAG	2 cut(s)	800, 1349
Sse9I	AATT	4 cut(s)	29, 128, 830, 1397
SsiI	CCGC	2 cut(s)	311, 555
StyD4I	CCNGG	3 cut(s)	99, 294, 733
TaaI	ACNGT	4 cut(s)	52, 1163, 1224, 1242
TaqI	TCGA	3 cut(s)	340, 866, 1350
TasI	AATT	4 cut(s)	29, 128, 830, 1397
TatI	WGTACW	1 cut(s)	678
TauI	GCSGC	1 cut(s)	558
TfiI	GAWTC	3 cut(s)	967, 1172, 1319
Tru1I	TTAA	1 cut(s)	1497
Tru9I	TTAA	1 cut(s)	1497
TscAI	CASTG	2 cut(s)	55, 832
TseI	GCWGC	4 cut(s)	198, 288, 761, 1355
TspDTI	ATGAA	7 cut(s)	17, 186, 333, 383, 651, 794, 1185
TspRI	CASTG	2 cut(s)	55, 832
Van91I	CCANNNNNTGG	1 cut(s)	740
VpaK11BI	GGWCC	2 cut(s)	619, 961
XceI	RCATGY	1 cut(s)	1148
XcmI	CCANNNNNNNNNTGG	1 cut(s)	131
XhoI	CTCGAG	1 cut(s)	1349
ZrmI	AGTACT	1 cut(s)	680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.