Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002023

Physical Location & Seq

Genomic Coordinates Reverse (-)

71934794 .. 71935523

Gene Structure 730 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0599000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGCGAACCATTTGGGATATGATACTTATGCTCTCGACTTGACTGCAGTGGAGGGCAACACTGAGCTGAGGAAGCTATTGATAGAAACATCAAGCAAATCCATTATTGTAATAGAGGACATTGATCGCGCGCTTGATTTCTCAGGCCGAATGAGGAAGAGAAAAGCTAATGAGGAGGAGGAAGAAAGGGGAAAGCTTAGGATACAAGAAACAGATCGAAACCAAACCCTATCAGCTTGTTGGGGAGAAAGGCTCATTGTCTTCACAACTAATCATGTGGAGAAACTCGATGCAGCGCTCATTCGGAAAGGAAGGATGGATAAGCACATAGAATTGTCTTACTGTCAGTTTGAAGCGTTCAAGGTGCTGGCTAAAAACTACCTTGAAATCGAAGCACACCAGTTGTTTCCCACCATTTGTAGCTTGCTTGGGAAAACCAATATGACTCCAGCTGATGTAGCTGAGCATTTGACACCCAAGACCATTTCTGGTGATGCTGAAAACTGCCTGGAAAATGCGGAAATCTGCCTGAAGGATCTGATCGAAGCTCTTGAAAAAGAAGAAGAGAATGCAAGGTTAAAATCTGAGGAAGGAGGAAGTGTGAGAAATCATCAGGTAAAGAGGAAGAAACTGATGACGCCACAGGATCATTTGATAATCAATGAAAAGAGGGCAAGAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003987 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006082 GO:0006083 GO:0008150 GO:0008152 GO:0009507 GO:0009514 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0016999 GO:0017144 GO:0019752 GO:0032787 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00010 ko00620 ko00640 ko00680 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00620 map00640 map00680 map00720 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

ACAS_N AMP-binding AMP-binding_C

Protein Analysis

227

Amino Acids

25.98

Weight (kDa)

5.88

Isoelectric Point (pI)

42.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	16 - 113	1.8e-08	ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540	PF25568	115 - 191	2.2e-26	At3g28540-like, AAA+ ATPase lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36880 AT5G36880 AT5G36880 AT5G36880 AT5G36880 AT5G36880
fragaria_vesca	FvH4_6g54480 FvH4_6g54480 FvH4_6g54480 FvH4_6g54480 FvH4_6g54480 FvH4_6g54480 FvH4_6g54480 FvH4_6g54480 FvH4_6g54480 FvH4_6g54480 FvH4_6g54480 FvH4_6g54480 FvH4_6g54480 FvH4_6g54480 FvH4_6g54480 FvH4_6g54480 FvH4_6g54480 FvH4_6g54480
malus_domestica	MD09G1000400.v1.1 MD17G1003300.v1.1
prunus_persica	Prupe.3G315800_v2.0.a1
pyrus_communis	pycom111g00030 pycom17g00010
rosa_chinensis	RchiOBHm_Chr2g0176771
rosa_multiflora	Rmu_sc0020992.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076170
rosa_rugosa	Rorug02G0598400 Rorug02G0598500 Rorug02G0598600 Rorug02G0598700 Rorug02G0598800 Rorug02G0598900 Rorug02G0599000 Rorug02G0599100 Rorug02G0599200
rosa_samantha	Rh2AG676000 Rh2BG687100 Rh2CG650500
rosa_wichuraiana	Rw2G055470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	129, 131
AciI	CCGC	1 cut(s)	518
AclWI	GGATC	2 cut(s)	543, 654
AcuI	CTGAAG	1 cut(s)	551
AcyI	GRCGYC	1 cut(s)	638
AfeI	AGCGCT	1 cut(s)	297
AgsI	TTSAA	4 cut(s)	353, 361, 386, 554
AjnI	CCWGG	1 cut(s)	507
AluBI	AGCT	9 cut(s)	67, 76, 167, 196, 236, 423, 452, 461, 548
AluI	AGCT	9 cut(s)	67, 76, 167, 196, 236, 423, 452, 461, 548
AlwI	GGATC	2 cut(s)	543, 654
Aor51HI	AGCGCT	1 cut(s)	297
AoxI	GGCC	1 cut(s)	145
ApeKI	GCWGC	1 cut(s)	293
AspLEI	GCGC	3 cut(s)	131, 133, 298
AsuHPI	GGTGA	1 cut(s)	503
BbsI	GAAGAC	1 cut(s)	253
BbvCI	CCTCAGC	1 cut(s)	68
BbvI	GCAGC	1 cut(s)	305
BccI	CCATC	1 cut(s)	310
BcgI	CGANNNNNNTGC	2 cut(s)	26, 60
BciT130I	CCWGG	1 cut(s)	509
BciVI	GTATCC	1 cut(s)	195
BfmI	CTRYAG	1 cut(s)	45
BfoI	RGCGCY	1 cut(s)	299
BfuI	GTATCC	1 cut(s)	195
BisI	GCNGC	1 cut(s)	294
BlpI	GCTNAGC	1 cut(s)	462
BlsI	GCNGC	1 cut(s)	295
Bme1390I	CCNGG	1 cut(s)	509
BmrFI	CCNGG	1 cut(s)	509
BmsI	GCATC	2 cut(s)	280, 484
BpiI	GAAGAC	1 cut(s)	253
BplI	GAGNNNNNCTC	2 cut(s)	237, 269
BpmI	CTGGAG	1 cut(s)	432
Bpu10I	CCTNAGC	2 cut(s)	68, 197
Bpu1102I	GCTNAGC	1 cut(s)	462
BsaHI	GRCGYC	1 cut(s)	638
BsaXI	ACNNNNNCTCC	2 cut(s)	585, 615
Bse1I	ACTGG	1 cut(s)	400
BseBI	CCWGG	1 cut(s)	509
BseGI	GGATG	1 cut(s)	321
BseMII	CTCAG	5 cut(s)	54, 59, 156, 453, 576
BseNI	ACTGG	1 cut(s)	400
BsePI	GCGCGC	1 cut(s)	129
BseRI	GAGGAG	2 cut(s)	188, 191
BseXI	GCAGC	1 cut(s)	305
Bsh1236I	CGCG	2 cut(s)	129, 131
BshFI	GGCC	1 cut(s)	147
BsmI	GAATGC	1 cut(s)	574
BsnI	GGCC	1 cut(s)	147
Bsp143I	GATC	5 cut(s)	124, 214, 535, 540, 646
Bsp1720I	GCTNAGC	1 cut(s)	462
BspACI	CCGC	1 cut(s)	518
BspANI	GGCC	1 cut(s)	147
BspCNI	CTCAG	5 cut(s)	55, 60, 155, 454, 577
BspFNI	CGCG	2 cut(s)	129, 131
BspMAI	CTGCAG	1 cut(s)	49
BspPI	GGATC	2 cut(s)	543, 654
BsrI	ACTGG	1 cut(s)	400
BssHII	GCGCGC	1 cut(s)	129
BssMI	GATC	5 cut(s)	124, 214, 535, 540, 646
BssNI	GRCGYC	1 cut(s)	638
Bst2UI	CCWGG	1 cut(s)	509
Bst4CI	ACNGT	1 cut(s)	344
Bst6I	CTCTTC	2 cut(s)	152, 558
BstACI	GRCGYC	1 cut(s)	638
BstC8I	GCNNGC	3 cut(s)	131, 369, 425
BstDEI	CTNAG	6 cut(s)	63, 68, 142, 197, 462, 585
BstF5I	GGATG	1 cut(s)	321
BstFNI	CGCG	2 cut(s)	129, 131
BstH2I	RGCGCY	1 cut(s)	299
BstHHI	GCGC	3 cut(s)	131, 133, 298
BstKTI	GATC	5 cut(s)	127, 217, 538, 543, 649
BstMBI	GATC	5 cut(s)	124, 214, 535, 540, 646
BstMWI	GCNNNNNNNGC	2 cut(s)	73, 458
BstNI	CCWGG	1 cut(s)	509
BstSCI	CCNGG	1 cut(s)	507
BstSFI	CTRYAG	1 cut(s)	45
BstUI	CGCG	2 cut(s)	129, 131
BstV1I	GCAGC	1 cut(s)	305
BstV2I	GAAGAC	1 cut(s)	253
BstX2I	RGATCY	1 cut(s)	535
BstYI	RGATCY	1 cut(s)	535
BsuI	GTATCC	1 cut(s)	195
BsuRI	GGCC	1 cut(s)	147
BtsCI	GGATG	1 cut(s)	321
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	2 cut(s)	54, 60
Cac8I	GCNNGC	3 cut(s)	131, 369, 425
CfoI	GCGC	3 cut(s)	131, 133, 298
CseI	GACGC	1 cut(s)	646
CviAII	CATG	1 cut(s)	275
DdeI	CTNAG	6 cut(s)	63, 68, 142, 197, 462, 585
DpnI	GATC	5 cut(s)	126, 216, 537, 542, 648
DpnII	GATC	5 cut(s)	124, 214, 535, 540, 646
Eam1104I	CTCTTC	2 cut(s)	152, 558
EarI	CTCTTC	2 cut(s)	152, 558
Eco47III	AGCGCT	1 cut(s)	297
Eco57I	CTGAAG	1 cut(s)	551
EcoRII	CCWGG	1 cut(s)	507
FaeI	CATG	1 cut(s)	278
FaiI	YATR	5 cut(s)	21, 30, 276, 329, 443
FatI	CATG	1 cut(s)	274
Fnu4HI	GCNGC	1 cut(s)	294
FokI	GGATG	1 cut(s)	328
Fsp4HI	GCNGC	1 cut(s)	294
GlaI	GCGC	3 cut(s)	130, 132, 297
GluI	GCNGC	1 cut(s)	294
GsuI	CTGGAG	1 cut(s)	432
HaeII	RGCGCY	1 cut(s)	299
HaeIII	GGCC	1 cut(s)	147
HgaI	GACGC	1 cut(s)	646
HhaI	GCGC	3 cut(s)	131, 133, 298
Hin1I	GRCGYC	1 cut(s)	638
Hin1II	CATG	1 cut(s)	278
Hin6I	GCGC	3 cut(s)	129, 131, 296
HinP1I	GCGC	3 cut(s)	129, 131, 296
HindIII	AAGCTT	1 cut(s)	194
HinfI	GANTC	1 cut(s)	445
HphI	GGTGA	1 cut(s)	503
Hpy188I	TCNGA	3 cut(s)	306, 540, 586
Hpy188III	TCNNGA	2 cut(s)	35, 551
HpyAV	CCTTC	3 cut(s)	306, 526, 584
HpyCH4III	ACNGT	1 cut(s)	344
HpyCH4V	TGCA	3 cut(s)	47, 293, 572
HpyF10VI	GCNNNNNNNGC	2 cut(s)	73, 458
HpyF3I	CTNAG	6 cut(s)	63, 68, 142, 197, 462, 585
Hsp92I	GRCGYC	1 cut(s)	638
Hsp92II	CATG	1 cut(s)	278
HspAI	GCGC	3 cut(s)	129, 131, 296
Kzo9I	GATC	5 cut(s)	124, 214, 535, 540, 646
Lsp1109I	GCAGC	1 cut(s)	305
LweI	GCATC	2 cut(s)	280, 484
MalI	GATC	5 cut(s)	126, 216, 537, 542, 648
MboI	GATC	5 cut(s)	124, 214, 535, 540, 646
MboII	GAAGA	6 cut(s)	169, 194, 253, 572, 575, 637
MflI	RGATCY	1 cut(s)	535
MluCI	AATT	2 cut(s)	332, 679
MlyI	GAGTC	1 cut(s)	439
MseI	TTAA	1 cut(s)	578
MspA1I	CMGCKG	1 cut(s)	452
MspR9I	CCNGG	1 cut(s)	509
Mva1269I	GAATGC	1 cut(s)	574
MvaI	CCWGG	1 cut(s)	509
MvnI	CGCG	2 cut(s)	129, 131
MwoI	GCNNNNNNNGC	2 cut(s)	73, 458
NdeII	GATC	5 cut(s)	124, 214, 535, 540, 646
NlaIII	CATG	1 cut(s)	278
PauI	GCGCGC	1 cut(s)	129
PctI	GAATGC	1 cut(s)	574
PkrI	GCNGC	1 cut(s)	295
PleI	GAGTC	1 cut(s)	439
PpsI	GAGTC	1 cut(s)	439
Psp6I	CCWGG	1 cut(s)	507
PspGI	CCWGG	1 cut(s)	507
PstI	CTGCAG	1 cut(s)	49
PsuI	RGATCY	1 cut(s)	535
PteI	GCGCGC	1 cut(s)	129
PvuII	CAGCTG	1 cut(s)	452
SaqAI	TTAA	1 cut(s)	578
SatI	GCNGC	1 cut(s)	294
Sau3AI	GATC	5 cut(s)	124, 214, 535, 540, 646
SchI	GAGTC	1 cut(s)	439
ScrFI	CCNGG	1 cut(s)	509
SfaNI	GCATC	2 cut(s)	280, 484
SfcI	CTRYAG	1 cut(s)	45
Sse9I	AATT	2 cut(s)	332, 679
SsiI	CCGC	1 cut(s)	518
StyD4I	CCNGG	1 cut(s)	507
TaaI	ACNGT	1 cut(s)	344
TaqI	TCGA	5 cut(s)	36, 217, 288, 390, 543
TasI	AATT	2 cut(s)	332, 679
Tru1I	TTAA	1 cut(s)	578
Tru9I	TTAA	1 cut(s)	578
TscAI	CASTG	2 cut(s)	54, 67
TseI	GCWGC	1 cut(s)	293
TspDTI	ATGAA	1 cut(s)	678
TspRI	CASTG	2 cut(s)	54, 67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.