Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002023

Physical Location & Seq

Genomic Coordinates Reverse (-)

71935532 .. 71936239

Gene Structure 708 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0599100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGAGGCCAGCAGACATGCTTGCTCATCTAGGATCTGACATTGGTGCTTTAATGTTCGTGGGATCTGCCATTTCACACTATCTCCCTCATCAATTTGGAAGCTACATCAGTGCTTACTTTCAAAGACTGCTGCTTTTCGCCACTCCTTACATCCAAATCACATTCGATGAATTAACTGGAGAGCGTCTCATGTGCAGTGAAGCTTATTCTGCAGTTGAGAACTATCTGAGCATAAGATACTCTAAAGAGGCAAAACGAATCAAGGCTGATATCAACAACAACTCCCTAGTTCTTAGCATGGATGAGTATGAAGTGGTTGTGGATGAGTTTGAAGGAGCTAGAGTATGGTGGATTTCAGGAAGTGGTGCTAAAAAAGACACACATTCTTCTCACTACAAGCTCTGCTTCCATAAAAGGCATCGGGATCTCATAATTGGGCAATACCTGAACCATGTCTTAAAGGAAGAGCCAAATTTGAGGAATCCACAACAAAAGCTTTATACCAACATGGAGTCACACTGGAGCCATGTAGGATTTCAGAACCCAGCAACATTTCAGACACTAGCCATGGAGCCAGAGAAGGAGGAGGAAATTATCCTCGACTTAAATGCATTTAGCATATCAGGAAAGTTCTATGCAATAATTGGGAGGGCATGGAAGCGAGGCTACCTCCTTTCTGGCCCTCAGGAACTGGCAAGTCCACACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003987 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006082 GO:0006083 GO:0008150 GO:0008152 GO:0009507 GO:0009514 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016405 GO:0016874 GO:0016877 GO:0016878 GO:0016999 GO:0017144 GO:0019752 GO:0032787 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00010 ko00620 ko00640 ko00680 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00620 map00640 map00680 map00720 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

ACAS_N AMP-binding AMP-binding_C

Protein Analysis

235

Amino Acids

26.95

Weight (kDa)

6.25

Isoelectric Point (pI)

33.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_assoc	PF14363	28 - 119	3.3e-22	Domain associated at C-terminal with AAA

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002023)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36880 AT5G36880 AT5G36880 AT5G36880 AT5G36880 AT5G36880
fragaria_vesca	FvH4_6g54480 FvH4_6g54480 FvH4_6g54480 FvH4_6g54480 FvH4_6g54480 FvH4_6g54480 FvH4_6g54480 FvH4_6g54480 FvH4_6g54480 FvH4_6g54480 FvH4_6g54480 FvH4_6g54480 FvH4_6g54480 FvH4_6g54480 FvH4_6g54480 FvH4_6g54480 FvH4_6g54480 FvH4_6g54480
malus_domestica	MD09G1000400.v1.1 MD17G1003300.v1.1
prunus_persica	Prupe.3G315800_v2.0.a1
pyrus_communis	pycom111g00030 pycom17g00010
rosa_chinensis	RchiOBHm_Chr2g0176771
rosa_multiflora	Rmu_sc0020992.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076170
rosa_rugosa	Rorug02G0598400 Rorug02G0598500 Rorug02G0598600 Rorug02G0598700 Rorug02G0598800 Rorug02G0598900 Rorug02G0599000 Rorug02G0599100 Rorug02G0599200
rosa_samantha	Rh2AG676000 Rh2BG687100 Rh2CG650500
rosa_wichuraiana	Rw2G055470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	40, 70, 432
AcsI	RAATTY	1 cut(s)	472
AgsI	TTSAA	2 cut(s)	122, 332
AluBI	AGCT	5 cut(s)	102, 203, 338, 400, 496
AluI	AGCT	5 cut(s)	102, 203, 338, 400, 496
Alw26I	GTCTC	1 cut(s)	191
AlwI	GGATC	3 cut(s)	40, 70, 432
AlwNI	CAGNNNCTG	1 cut(s)	691
AoxI	GGCC	2 cut(s)	5, 679
ApeKI	GCWGC	1 cut(s)	130
ApoI	RAATTY	1 cut(s)	472
AspS9I	GGNCC	1 cut(s)	680
AxyI	CCTNAGG	1 cut(s)	684
BarI	GAAGNNNNNNTAC	2 cut(s)	650, 682
BbvI	GCAGC	1 cut(s)	117
BcgI	CGANNNNNNTGC	2 cut(s)	590, 624
BcoDI	GTCTC	1 cut(s)	191
BfaI	CTAG	4 cut(s)	29, 287, 339, 563
BfmI	CTRYAG	1 cut(s)	210
BisI	GCNGC	1 cut(s)	131
BlsI	GCNGC	1 cut(s)	132
BmgT120I	GGNCC	1 cut(s)	680
BmiI	GGNNCC	2 cut(s)	524, 573
BmsI	GCATC	1 cut(s)	427
BplI	GAGNNNNNCTC	4 cut(s)	171, 203, 654, 686
BpmI	CTGGAG	2 cut(s)	198, 541
BsaJI	CCNNGG	1 cut(s)	567
BsaXI	ACNNNNNCTCC	6 cut(s)	66, 96, 266, 296, 327, 357
Bse1I	ACTGG	3 cut(s)	181, 524, 696
Bse21I	CCTNAGG	1 cut(s)	684
BseDI	CCNNGG	1 cut(s)	567
BseGI	GGATG	3 cut(s)	150, 307, 328
BseMII	CTCAG	2 cut(s)	218, 698
BseNI	ACTGG	3 cut(s)	181, 524, 696
BseRI	GAGGAG	1 cut(s)	599
BseXI	GCAGC	1 cut(s)	117
BseYI	CCCAGC	1 cut(s)	544
BsgI	GTGCAG	1 cut(s)	214
BshFI	GGCC	2 cut(s)	7, 681
BsmAI	GTCTC	1 cut(s)	191
BsmBI	CGTCTC	1 cut(s)	191
BsnI	GGCC	2 cut(s)	7, 681
Bsp143I	GATC	3 cut(s)	32, 62, 424
Bsp19I	CCATGG	1 cut(s)	567
BspANI	GGCC	2 cut(s)	7, 681
BspCNI	CTCAG	2 cut(s)	219, 697
BspLI	GGNNCC	2 cut(s)	524, 573
BspMAI	CTGCAG	1 cut(s)	214
BspPI	GGATC	3 cut(s)	40, 70, 432
BspQI	GCTCTTC	1 cut(s)	459
BsrI	ACTGG	3 cut(s)	181, 524, 696
BssECI	CCNNGG	1 cut(s)	567
BssMI	GATC	3 cut(s)	32, 62, 424
BssT1I	CCWWGG	1 cut(s)	567
Bst6I	CTCTTC	1 cut(s)	459
BstC8I	GCNNGC	2 cut(s)	9, 21
BstDEI	CTNAG	3 cut(s)	227, 293, 684
BstDSI	CCRYGG	1 cut(s)	567
BstF5I	GGATG	3 cut(s)	150, 307, 328
BstKTI	GATC	3 cut(s)	35, 65, 427
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	3 cut(s)	32, 62, 424
BstMWI	GCNNNNNNNGC	1 cut(s)	209
BstNSI	RCATGY	1 cut(s)	19
BstSFI	CTRYAG	1 cut(s)	210
BstV1I	GCAGC	1 cut(s)	117
BstX2I	RGATCY	3 cut(s)	32, 62, 424
BstYI	RGATCY	3 cut(s)	32, 62, 424
Bsu36I	CCTNAGG	1 cut(s)	684
BsuRI	GGCC	2 cut(s)	7, 681
BtgI	CCRYGG	1 cut(s)	567
BtsCI	GGATG	3 cut(s)	150, 307, 328
BtsI	GCAGTG	1 cut(s)	202
BtsIMutI	CAGTG	3 cut(s)	115, 202, 517
Cac8I	GCNNGC	2 cut(s)	9, 21
CaiI	CAGNNNCTG	1 cut(s)	691
Cfr13I	GGNCC	1 cut(s)	680
CseI	GACGC	1 cut(s)	173
CviAII	CATG	8 cut(s)	16, 190, 298, 452, 508, 527, 568, 654
DdeI	CTNAG	3 cut(s)	227, 293, 684
DpnI	GATC	3 cut(s)	34, 64, 426
DpnII	GATC	3 cut(s)	32, 62, 424
Eam1104I	CTCTTC	1 cut(s)	459
EarI	CTCTTC	1 cut(s)	459
Eco130I	CCWWGG	1 cut(s)	567
Eco32I	GATATC	1 cut(s)	271
Eco81I	CCTNAGG	1 cut(s)	684
EcoRV	GATATC	1 cut(s)	271
EcoT14I	CCWWGG	1 cut(s)	567
EcoT22I	ATGCAT	1 cut(s)	613
ErhI	CCWWGG	1 cut(s)	567
Esp3I	CGTCTC	1 cut(s)	191
FaeI	CATG	8 cut(s)	19, 193, 301, 455, 511, 530, 571, 657
FalI	AAGNNNNNCTT	2 cut(s)	389, 421
FatI	CATG	8 cut(s)	15, 189, 297, 451, 507, 526, 567, 653
Fnu4HI	GCNGC	1 cut(s)	131
FokI	GGATG	3 cut(s)	137, 314, 335
Fsp4HI	GCNGC	1 cut(s)	131
FspBI	CTAG	4 cut(s)	29, 287, 339, 563
GluI	GCNGC	1 cut(s)	131
GsaI	CCCAGC	1 cut(s)	548
GsuI	CTGGAG	2 cut(s)	198, 541
HaeIII	GGCC	2 cut(s)	7, 681
HgaI	GACGC	1 cut(s)	173
Hin1II	CATG	8 cut(s)	19, 193, 301, 455, 511, 530, 571, 657
HindIII	AAGCTT	2 cut(s)	201, 494
HinfI	GANTC	3 cut(s)	258, 481, 512
Hpy166II	GTNNAC	1 cut(s)	701
Hpy188I	TCNGA	4 cut(s)	37, 228, 540, 558
Hpy188III	TCNNGA	4 cut(s)	357, 422, 624, 686
Hpy8I	GTNNAC	1 cut(s)	701
HpyAV	CCTTC	2 cut(s)	326, 574
HpyCH4V	TGCA	4 cut(s)	195, 212, 611, 638
HpyF10VI	GCNNNNNNNGC	1 cut(s)	209
HpyF3I	CTNAG	3 cut(s)	227, 293, 684
Hsp92II	CATG	8 cut(s)	19, 193, 301, 455, 511, 530, 571, 657
Kzo9I	GATC	3 cut(s)	32, 62, 424
LguI	GCTCTTC	1 cut(s)	459
LmnI	GCTCC	3 cut(s)	335, 522, 571
Lsp1109I	GCAGC	1 cut(s)	117
LweI	GCATC	1 cut(s)	427
MaeI	CTAG	4 cut(s)	29, 287, 339, 563
MaeIII	GTNAC	1 cut(s)	513
MalI	GATC	3 cut(s)	34, 64, 426
MboI	GATC	3 cut(s)	32, 62, 424
MboII	GAAGA	2 cut(s)	378, 476
MflI	RGATCY	3 cut(s)	32, 62, 424
MluCI	AATT	6 cut(s)	92, 170, 432, 472, 591, 642
MlyI	GAGTC	1 cut(s)	521
Mph1103I	ATGCAT	1 cut(s)	613
MseI	TTAA	4 cut(s)	50, 173, 458, 605
MwoI	GCNNNNNNNGC	1 cut(s)	209
NcoI	CCATGG	1 cut(s)	567
NdeII	GATC	3 cut(s)	32, 62, 424
NlaIII	CATG	8 cut(s)	19, 193, 301, 455, 511, 530, 571, 657
NlaIV	GGNNCC	2 cut(s)	524, 573
NmuCI	GTSAC	1 cut(s)	513
NsiI	ATGCAT	1 cut(s)	613
NspI	RCATGY	1 cut(s)	19
PciSI	GCTCTTC	1 cut(s)	459
PfeI	GAWTC	2 cut(s)	258, 481
PkrI	GCNGC	1 cut(s)	132
PleI	GAGTC	1 cut(s)	520
PpsI	GAGTC	1 cut(s)	520
PspFI	CCCAGC	1 cut(s)	544
PspN4I	GGNNCC	2 cut(s)	524, 573
PspPI	GGNCC	1 cut(s)	680
PstI	CTGCAG	1 cut(s)	214
PstNI	CAGNNNCTG	1 cut(s)	691
PsuI	RGATCY	3 cut(s)	32, 62, 424
SapI	GCTCTTC	1 cut(s)	459
SaqAI	TTAA	4 cut(s)	50, 173, 458, 605
SatI	GCNGC	1 cut(s)	131
Sau3AI	GATC	3 cut(s)	32, 62, 424
Sau96I	GGNCC	1 cut(s)	680
SchI	GAGTC	1 cut(s)	521
SetI	ASST	7 cut(s)	104, 205, 340, 402, 447, 498, 672
SfaNI	GCATC	1 cut(s)	427
SfcI	CTRYAG	1 cut(s)	210
Sse9I	AATT	6 cut(s)	92, 170, 432, 472, 591, 642
SspMI	CTAG	4 cut(s)	29, 287, 339, 563
StyI	CCWWGG	1 cut(s)	567
TaqI	TCGA	2 cut(s)	165, 600
TasI	AATT	6 cut(s)	92, 170, 432, 472, 591, 642
TfiI	GAWTC	2 cut(s)	258, 481
Tru1I	TTAA	4 cut(s)	50, 173, 458, 605
Tru9I	TTAA	4 cut(s)	50, 173, 458, 605
TscAI	CASTG	3 cut(s)	115, 202, 524
TseFI	GTSAC	1 cut(s)	513
TseI	GCWGC	1 cut(s)	130
Tsp45I	GTSAC	1 cut(s)	513
TspDTI	ATGAA	2 cut(s)	183, 324
TspRI	CASTG	3 cut(s)	115, 202, 524
XapI	RAATTY	1 cut(s)	472
XceI	RCATGY	1 cut(s)	19
XspI	CTAG	4 cut(s)	29, 287, 339, 563
Zsp2I	ATGCAT	1 cut(s)	613

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.