Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0003475

Physical Location & Seq

Genomic Coordinates Forward (+)

419245 .. 419923

Gene Structure 679 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g00620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGGCGCACGGAAAAGTCAGTCTCCTTCAAGATCTCCTCCCCTCGAATCTGGTCGATTCACACTTCTCCGCCAAAGATGAAGCCTTCCAAGGAAACAGTGAGGAGAAGGCGCTAACGGGGTCCCTTGACTTGTCAAGTGGTGGTTGTGCTCCCTTTCTAATTATCCATTGTTTTCCCATGTTCAATTTTGTTCACCGCATTGGCTTTCATTTACTGTATTTTTGTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GYF

Protein Analysis

77

Amino Acids

8.38

Weight (kDa)

5.85

Isoelectric Point (pI)

35.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003475)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g53851 FvH4_6g53851 FvH4_6g53851 FvH4_6g53851 FvH4_6g53851
malus_domestica	MD09G1007900.v1.1 MD17G1002800.v1.1
prunus_persica	Prupe.3G309100_v2.0.a1 Prupe.3G309100_v2.0.a1 Prupe.3G309100_v2.0.a1 Prupe.3G309100_v2.0.a1 Prupe.3G309100_v2.0.a1 Prupe.3G309100_v2.0.a1 Prupe.3G309100_v2.0.a1 Prupe.3G309100_v2.0.a1 Prupe.3G309100_v2.0.a1 Prupe.3G309100_v2.0.a1 Prupe.3G309100_v2.0.a1 Prupe.3G309100_v2.0.a1 Prupe.3G309100_v2.0.a1
pyrus_communis	pycom111g00620 pycom111g00630 pycom17g00650 pycom17g00660
rosa_chinensis	RchiOBHm_Chr2g0176001
rosa_laevigata	RLG00000022372
rosa_roxburghii	Rroxscaffold_2G00076860 Rroxscaffold_2G00076870
rosa_rugosa	Rorug02G0589300 Rorug02G0589400 Rorug02G0589400
rosa_samantha	Rh2AG668500 Rh2BG680000 Rh2CG642900 Rh2DG693700
rosa_wichuraiana	Rw2G054810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	69, 196
AgsI	TTSAA	2 cut(s)	29, 184
Alw21I	GWGCWC	1 cut(s)	151
Alw26I	GTCTC	1 cut(s)	26
AspLEI	GCGC	2 cut(s)	7, 112
AspS9I	GGNCC	1 cut(s)	120
AsuHPI	GGTGA	1 cut(s)	185
AvaII	GGWCC	1 cut(s)	120
Bbv12I	GWGCWC	1 cut(s)	151
BcoDI	GTCTC	1 cut(s)	26
BfoI	RGCGCY	1 cut(s)	113
BglII	AGATCT	1 cut(s)	31
Bme18I	GGWCC	1 cut(s)	120
BmgT120I	GGNCC	1 cut(s)	120
BmiI	GGNNCC	2 cut(s)	121, 122
BsaJI	CCNNGG	1 cut(s)	88
BseDI	CCNNGG	1 cut(s)	88
BseRI	GAGGAG	2 cut(s)	26, 116
BsiHKAI	GWGCWC	1 cut(s)	151
BslFI	GGGAC	1 cut(s)	106
BsmAI	GTCTC	1 cut(s)	26
BsmFI	GGGAC	1 cut(s)	106
Bsp1286I	GDGCHC	1 cut(s)	151
Bsp143I	GATC	1 cut(s)	31
BspACI	CCGC	2 cut(s)	69, 196
BspLI	GGNNCC	2 cut(s)	121, 122
BssECI	CCNNGG	1 cut(s)	88
BssMI	GATC	1 cut(s)	31
BssT1I	CCWWGG	1 cut(s)	88
Bst4CI	ACNGT	2 cut(s)	98, 216
BstH2I	RGCGCY	1 cut(s)	113
BstHHI	GCGC	2 cut(s)	7, 112
BstKTI	GATC	1 cut(s)	34
BstMAI	GTCTC	1 cut(s)	26
BstMBI	GATC	1 cut(s)	31
BstX2I	RGATCY	1 cut(s)	31
BstYI	RGATCY	1 cut(s)	31
BtsIMutI	CAGTG	1 cut(s)	103
CfoI	GCGC	2 cut(s)	7, 112
Cfr13I	GGNCC	1 cut(s)	120
CviAII	CATG	1 cut(s)	178
CviJI	RGCY	2 cut(s)	83, 204
CviKI_1	RGCY	2 cut(s)	83, 204
DpnI	GATC	1 cut(s)	33
DpnII	GATC	1 cut(s)	31
EciI	GGCGGA	1 cut(s)	58
Eco130I	CCWWGG	1 cut(s)	88
Eco47I	GGWCC	1 cut(s)	120
EcoO109I	RGGNCCY	1 cut(s)	120
EcoT14I	CCWWGG	1 cut(s)	88
ErhI	CCWWGG	1 cut(s)	88
FaeI	CATG	1 cut(s)	181
FaiI	YATR	2 cut(s)	179, 229
FaqI	GGGAC	1 cut(s)	106
FatI	CATG	1 cut(s)	177
GlaI	GCGC	2 cut(s)	6, 111
HaeII	RGCGCY	1 cut(s)	113
HhaI	GCGC	2 cut(s)	7, 112
Hin1II	CATG	1 cut(s)	181
Hin6I	GCGC	2 cut(s)	5, 110
HinP1I	GCGC	2 cut(s)	5, 110
HinfI	GANTC	2 cut(s)	46, 56
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188III	TCNNGA	1 cut(s)	29
Hpy8I	GTNNAC	1 cut(s)	193
HpyAV	CCTTC	3 cut(s)	35, 94, 100
HpyCH4III	ACNGT	2 cut(s)	98, 216
Hsp92II	CATG	1 cut(s)	181
HspAI	GCGC	2 cut(s)	5, 110
KflI	GGGWCCC	1 cut(s)	120
Kzo9I	GATC	1 cut(s)	31
LmnI	GCTCC	1 cut(s)	154
LpnPI	CCDG	1 cut(s)	35
MalI	GATC	1 cut(s)	33
MboI	GATC	1 cut(s)	31
MflI	RGATCY	1 cut(s)	31
MhlI	GDGCHC	1 cut(s)	151
MluCI	AATT	2 cut(s)	159, 184
MnlI	CCTC	3 cut(s)	47, 52, 94
NdeII	GATC	1 cut(s)	31
NlaIII	CATG	1 cut(s)	181
NlaIV	GGNNCC	2 cut(s)	121, 122
PfeI	GAWTC	2 cut(s)	46, 56
PpuMI	RGGWCCY	1 cut(s)	120
Psp5II	RGGWCCY	1 cut(s)	120
PspN4I	GGNNCC	2 cut(s)	121, 122
PspPI	GGNCC	1 cut(s)	120
PspPPI	RGGWCCY	1 cut(s)	120
PsuI	RGATCY	1 cut(s)	31
Sau3AI	GATC	1 cut(s)	31
Sau96I	GGNCC	1 cut(s)	120
SduI	GDGCHC	1 cut(s)	151
SinI	GGWCC	1 cut(s)	120
Sse9I	AATT	2 cut(s)	159, 184
SsiI	CCGC	2 cut(s)	69, 196
StyI	CCWWGG	1 cut(s)	88
TaaI	ACNGT	2 cut(s)	98, 216
TaqI	TCGA	2 cut(s)	44, 54
TasI	AATT	2 cut(s)	159, 184
TfiI	GAWTC	2 cut(s)	46, 56
TscAI	CASTG	1 cut(s)	103
TspDTI	ATGAA	2 cut(s)	93, 197
TspGWI	ACGGA	1 cut(s)	24
TspRI	CASTG	1 cut(s)	103
VpaK11BI	GGWCC	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.