GYF domain
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g53851 FvH4_6g53851 FvH4_6g53851 FvH4_6g53851 FvH4_6g53851 |
| malus_domestica | MD09G1007900.v1.1 MD17G1002800.v1.1 |
| prunus_persica | Prupe.3G309100_v2.0.a1 Prupe.3G309100_v2.0.a1 Prupe.3G309100_v2.0.a1 Prupe.3G309100_v2.0.a1 Prupe.3G309100_v2.0.a1 Prupe.3G309100_v2.0.a1 Prupe.3G309100_v2.0.a1 Prupe.3G309100_v2.0.a1 Prupe.3G309100_v2.0.a1 Prupe.3G309100_v2.0.a1 Prupe.3G309100_v2.0.a1 Prupe.3G309100_v2.0.a1 Prupe.3G309100_v2.0.a1 |
| pyrus_communis | pycom111g00620 pycom111g00630 pycom17g00650 pycom17g00660 |
| rosa_chinensis | RchiOBHm_Chr2g0176001 |
| rosa_laevigata | RLG00000022372 |
| rosa_roxburghii | Rroxscaffold_2G00076860 Rroxscaffold_2G00076870 |
| rosa_rugosa | Rorug02G0589300 Rorug02G0589400 Rorug02G0589400 |
| rosa_samantha | Rh2AG668500 Rh2BG680000 Rh2CG642900 Rh2DG693700 |
| rosa_wichuraiana | Rw2G054810 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 4 |
| Acc36I | ACCTGC | 1 cut(s) | 4 |
| AccB1I | GGYRCC | 2 cut(s) | 1316, 1346 |
| AccI | GTMKAC | 1 cut(s) | 327 |
| AccII | CGCG | 2 cut(s) | 2643, 2763 |
| AccIII | TCCGGA | 1 cut(s) | 2921 |
| AciI | CCGC | 9 cut(s) | 624, 981, 2105, 2325, 2643, 2761, 3416, 3560, 3565 |
| AcoI | YGGCCR | 2 cut(s) | 103, 3553 |
| AcsI | RAATTY | 5 cut(s) | 878, 1336, 2579, 2864, 3419 |
| AcuI | CTGAAG | 7 cut(s) | 543, 1074, 1721, 1919, 1946, 2442, 3351 |
| AcyI | GRCGYC | 3 cut(s) | 663, 1317, 3298 |
| AdeI | CACNNNGTG | 1 cut(s) | 1565 |
| AfaI | GTAC | 2 cut(s) | 90, 2943 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 461, 482, 749, 2283, 2552, 2928, 3153, 3545, 3639 |
| AflIII | ACRYGT | 1 cut(s) | 2041 |
| AgeI | ACCGGT | 1 cut(s) | 1584 |
| AgsI | TTSAA | 9 cut(s) | 606, 649, 842, 1155, 1676, 2054, 2145, 2732, 3292 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3325 |
| AhlI | ACTAGT | 1 cut(s) | 1160 |
| AjnI | CCWGG | 7 cut(s) | 612, 747, 1048, 1591, 2430, 3315, 3378 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1719, 1751 |
| AleI | CACNNNNGTG | 1 cut(s) | 551 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 949, 981 |
| Alw21I | GWGCWC | 6 cut(s) | 233, 1221, 1773, 2049, 2641, 2688 |
| Alw26I | GTCTC | 5 cut(s) | 895, 1370, 3200, 3244, 3455 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 557, 1531, 3506 |
| Ama87I | CYCGRG | 1 cut(s) | 6 |
| Aor13HI | TCCGGA | 1 cut(s) | 2921 |
| ApoI | RAATTY | 5 cut(s) | 878, 1336, 2579, 2864, 3419 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2854, 2886 |
| AsiGI | ACCGGT | 1 cut(s) | 1584 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1521 |
| AspLEI | GCGC | 7 cut(s) | 823, 1319, 1797, 1821, 1845, 1869, 1893 |
| AspS9I | GGNCC | 6 cut(s) | 740, 884, 1582, 2375, 2851, 3005 |
| AsuC2I | CCSGG | 2 cut(s) | 1481, 2930 |
| AvaI | CYCGRG | 1 cut(s) | 6 |
| AvaII | GGWCC | 3 cut(s) | 740, 1582, 2851 |
| AxyI | CCTNAGG | 2 cut(s) | 693, 2547 |
| BalI | TGGCCA | 1 cut(s) | 3555 |
| BanI | GGYRCC | 2 cut(s) | 1316, 1346 |
| BanII | GRGCYC | 2 cut(s) | 233, 1221 |
| BauI | CACGAG | 1 cut(s) | 671 |
| BbsI | GAAGAC | 3 cut(s) | 1080, 2910, 3601 |
| Bbv12I | GWGCWC | 6 cut(s) | 233, 1221, 1773, 2049, 2641, 2688 |
| BceAI | ACGGC | 4 cut(s) | 90, 1397, 1618, 3523 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 746, 780, 2110, 2144 |
| BciT130I | CCWGG | 7 cut(s) | 614, 749, 1050, 1593, 2432, 3317, 3380 |
| BclI | TGATCA | 5 cut(s) | 637, 1171, 1279, 1357, 2968 |
| BcnI | CCSGG | 2 cut(s) | 1481, 2930 |
| BcoDI | GTCTC | 5 cut(s) | 895, 1370, 3200, 3244, 3455 |
| BcuI | ACTAGT | 1 cut(s) | 1160 |
| BfaI | CTAG | 6 cut(s) | 92, 312, 378, 900, 1161, 2159 |
| BfmI | CTRYAG | 9 cut(s) | 71, 1428, 1790, 1814, 1838, 1862, 1886, 2306, 2345 |
| BfoI | RGCGCY | 6 cut(s) | 1320, 1798, 1822, 1846, 1870, 1894 |
| BfuAI | ACCTGC | 1 cut(s) | 4 |
| BglII | AGATCT | 2 cut(s) | 2027, 3014 |
| BlpI | GCTNAGC | 1 cut(s) | 2751 |
| Bme1390I | CCNGG | 9 cut(s) | 614, 749, 1050, 1481, 1593, 2432, 2930, 3317, 3380 |
| Bme18I | GGWCC | 3 cut(s) | 740, 1582, 2851 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3325 |
| BmeT110I | CYCGRG | 1 cut(s) | 6 |
| BmgT120I | GGNCC | 6 cut(s) | 740, 884, 1582, 2375, 2851, 3005 |
| BmiI | GGNNCC | 5 cut(s) | 1318, 1348, 1589, 2608, 3537 |
| BmrFI | CCNGG | 9 cut(s) | 614, 749, 1050, 1481, 1593, 2432, 2930, 3317, 3380 |
| BmrI | ACTGGG | 1 cut(s) | 570 |
| BmuI | ACTGGG | 1 cut(s) | 570 |
| BpiI | GAAGAC | 3 cut(s) | 1080, 2910, 3601 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 126, 158 |
| BpmI | CTGGAG | 2 cut(s) | 1976, 3554 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2239 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2751 |
| BpuEI | CTTGAG | 4 cut(s) | 708, 2016, 2173, 3467 |
| BpuMI | CCSGG | 2 cut(s) | 1481, 2930 |
| Bsa29I | ATCGAT | 1 cut(s) | 756 |
| BsaBI | GATNNNNATC | 2 cut(s) | 153, 1284 |
| BsaHI | GRCGYC | 3 cut(s) | 663, 1317, 3298 |
| BsaWI | WCCGGW | 4 cut(s) | 454, 1584, 2921, 3639 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 949, 979, 2031, 2061, 2925, 2955, 3222, 3252 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 461, 482, 749, 2283, 2552, 2928, 3153, 3545, 3639 |
| Bse118I | RCCGGY | 1 cut(s) | 1584 |
| Bse1I | ACTGG | 9 cut(s) | 466, 576, 803, 1649, 2672, 2975, 3491, 3537, 3574 |
| Bse21I | CCTNAGG | 2 cut(s) | 693, 2547 |
| Bse3DI | GCAATG | 3 cut(s) | 388, 661, 2622 |
| Bse8I | GATNNNNATC | 2 cut(s) | 153, 1284 |
| BseAI | TCCGGA | 1 cut(s) | 2921 |
| BseBI | CCWGG | 7 cut(s) | 614, 749, 1050, 1593, 2432, 3317, 3380 |
| BseCI | ATCGAT | 1 cut(s) | 756 |
| BseGI | GGATG | 9 cut(s) | 204, 934, 1192, 1645, 2113, 2217, 2656, 2668, 2947 |
| BseJI | GATNNNNATC | 2 cut(s) | 153, 1284 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 461, 482, 749, 2283, 2552, 2928, 3153, 3545, 3639 |
| BseMI | GCAATG | 3 cut(s) | 388, 661, 2622 |
| BseNI | ACTGG | 9 cut(s) | 466, 576, 803, 1649, 2672, 2975, 3491, 3537, 3574 |
| BseRI | GAGGAG | 1 cut(s) | 3605 |
| BsgI | GTGCAG | 2 cut(s) | 1587, 3513 |
| Bsh1236I | CGCG | 2 cut(s) | 2643, 2763 |
| BshNI | GGYRCC | 2 cut(s) | 1316, 1346 |
| BshTI | ACCGGT | 1 cut(s) | 1584 |
| BshVI | ATCGAT | 1 cut(s) | 756 |
| BsiHKAI | GWGCWC | 6 cut(s) | 233, 1221, 1773, 2049, 2641, 2688 |
| BsiHKCI | CYCGRG | 1 cut(s) | 6 |
| BsiSI | CCGG | 6 cut(s) | 455, 1481, 1585, 2922, 2929, 3640 |
| BslFI | GGGAC | 2 cut(s) | 356, 2164 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 461, 482, 749, 2283, 2552, 2928, 3153, 3545, 3639 |
| BsmAI | GTCTC | 5 cut(s) | 895, 1370, 3200, 3244, 3455 |
| BsmFI | GGGAC | 2 cut(s) | 356, 2164 |
| BsmI | GAATGC | 1 cut(s) | 1008 |
| BsoBI | CYCGRG | 1 cut(s) | 6 |
| Bsp1286I | GDGCHC | 6 cut(s) | 233, 1221, 1773, 2049, 2641, 2688 |
| Bsp13I | TCCGGA | 1 cut(s) | 2921 |
| Bsp1407I | TGTACA | 1 cut(s) | 2941 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2751 |
| Bsp19I | CCATGG | 1 cut(s) | 2778 |
| BspACI | CCGC | 9 cut(s) | 624, 981, 2105, 2325, 2643, 2761, 3416, 3560, 3565 |
| BspDI | ATCGAT | 1 cut(s) | 756 |
| BspEI | TCCGGA | 1 cut(s) | 2921 |
| BspFNI | CGCG | 2 cut(s) | 2643, 2763 |
| BspLI | GGNNCC | 5 cut(s) | 1318, 1348, 1589, 2608, 3537 |
| BspMAI | CTGCAG | 7 cut(s) | 1794, 1818, 1842, 1866, 1890, 2310, 2349 |
| BspMI | ACCTGC | 1 cut(s) | 4 |
| BspQI | GCTCTTC | 2 cut(s) | 644, 2461 |
| BspT107I | GGYRCC | 2 cut(s) | 1316, 1346 |
| BsrDI | GCAATG | 3 cut(s) | 388, 661, 2622 |
| BsrFI | RCCGGY | 1 cut(s) | 1584 |
| BsrGI | TGTACA | 1 cut(s) | 2941 |
| BsrI | ACTGG | 9 cut(s) | 466, 576, 803, 1649, 2672, 2975, 3491, 3537, 3574 |
| BssAI | RCCGGY | 1 cut(s) | 1584 |
| BssNAI | GTATAC | 1 cut(s) | 328 |
| BssNI | GRCGYC | 3 cut(s) | 663, 1317, 3298 |
| BssSI | CACGAG | 1 cut(s) | 671 |
| BssT1I | CCWWGG | 4 cut(s) | 736, 1342, 2378, 2778 |
| Bst1107I | GTATAC | 1 cut(s) | 328 |
| Bst2BI | CACGAG | 1 cut(s) | 671 |
| Bst2UI | CCWGG | 7 cut(s) | 614, 749, 1050, 1593, 2432, 3317, 3380 |
| Bst4CI | ACNGT | 7 cut(s) | 544, 1469, 1521, 1555, 2058, 2883, 3265 |
| Bst6I | CTCTTC | 4 cut(s) | 267, 644, 2461, 3228 |
| BstACI | GRCGYC | 3 cut(s) | 663, 1317, 3298 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1565 |
| BstAUI | TGTACA | 1 cut(s) | 2941 |
| BstDSI | CCRYGG | 1 cut(s) | 2778 |
| BstEII | GGTNACC | 1 cut(s) | 3628 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2550 |
| BstF5I | GGATG | 9 cut(s) | 204, 934, 1192, 1645, 2113, 2217, 2656, 2668, 2947 |
| BstFNI | CGCG | 2 cut(s) | 2643, 2763 |
| BstH2I | RGCGCY | 6 cut(s) | 1320, 1798, 1822, 1846, 1870, 1894 |
| BstHHI | GCGC | 7 cut(s) | 823, 1319, 1797, 1821, 1845, 1869, 1893 |
| BstMAI | GTCTC | 5 cut(s) | 895, 1370, 3200, 3244, 3455 |
| BstNI | CCWGG | 7 cut(s) | 614, 749, 1050, 1593, 2432, 3317, 3380 |
| BstNSI | RCATGY | 4 cut(s) | 209, 2045, 3402, 3481 |
| BstPI | GGTNACC | 1 cut(s) | 3628 |
| BstSCI | CCNGG | 9 cut(s) | 612, 747, 1048, 1479, 1591, 2430, 2928, 3315, 3378 |
| BstSFI | CTRYAG | 9 cut(s) | 71, 1428, 1790, 1814, 1838, 1862, 1886, 2306, 2345 |
| BstUI | CGCG | 2 cut(s) | 2643, 2763 |
| BstV2I | GAAGAC | 3 cut(s) | 1080, 2910, 3601 |
| BstX2I | RGATCY | 7 cut(s) | 374, 830, 1432, 2027, 3014, 3130, 3657 |
| BstYI | RGATCY | 7 cut(s) | 374, 830, 1432, 2027, 3014, 3130, 3657 |
| BstZ17I | GTATAC | 1 cut(s) | 328 |
| Bsu15I | ATCGAT | 1 cut(s) | 756 |
| Bsu36I | CCTNAGG | 2 cut(s) | 693, 2547 |
| BsuTUI | ATCGAT | 1 cut(s) | 756 |
| BtgI | CCRYGG | 1 cut(s) | 2778 |
| BtgZI | GCGATG | 1 cut(s) | 3647 |
| BtsCI | GGATG | 9 cut(s) | 204, 934, 1192, 1645, 2113, 2217, 2656, 2668, 2947 |
| BtsI | GCAGTG | 5 cut(s) | 322, 558, 1075, 2102, 3178 |
| BtsIMutI | CAGTG | 8 cut(s) | 322, 558, 1075, 1474, 1656, 2102, 3178, 3530 |
| BveI | ACCTGC | 1 cut(s) | 4 |
| CaiI | CAGNNNCTG | 3 cut(s) | 557, 1531, 3506 |
| CfoI | GCGC | 7 cut(s) | 823, 1319, 1797, 1821, 1845, 1869, 1893 |
| Cfr10I | RCCGGY | 1 cut(s) | 1584 |
| Cfr13I | GGNCC | 6 cut(s) | 740, 884, 1582, 2375, 2851, 3005 |
| ClaI | ATCGAT | 1 cut(s) | 756 |
| Csp6I | GTAC | 2 cut(s) | 89, 2942 |
| CspAI | ACCGGT | 1 cut(s) | 1584 |
| CviQI | GTAC | 2 cut(s) | 89, 2942 |
| DinI | GGCGCC | 1 cut(s) | 1318 |
| DraI | TTTAAA | 2 cut(s) | 441, 504 |
| DraIII | CACNNNGTG | 1 cut(s) | 1565 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3325 |
| EaeI | YGGCCR | 2 cut(s) | 103, 3553 |
| Eam1104I | CTCTTC | 4 cut(s) | 267, 644, 2461, 3228 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3325 |
| EarI | CTCTTC | 4 cut(s) | 267, 644, 2461, 3228 |
| EciI | GGCGGA | 2 cut(s) | 2120, 3580 |
| Ecl136II | GAGCTC | 2 cut(s) | 231, 1219 |
| Eco130I | CCWWGG | 4 cut(s) | 736, 1342, 2378, 2778 |
| Eco147I | AGGCCT | 2 cut(s) | 1057, 1243 |
| Eco24I | GRGCYC | 2 cut(s) | 233, 1221 |
| Eco47I | GGWCC | 3 cut(s) | 740, 1582, 2851 |
| Eco53kI | GAGCTC | 2 cut(s) | 231, 1219 |
| Eco57I | CTGAAG | 7 cut(s) | 543, 1074, 1721, 1919, 1946, 2442, 3351 |
| Eco81I | CCTNAGG | 2 cut(s) | 693, 2547 |
| Eco88I | CYCGRG | 1 cut(s) | 6 |
| Eco91I | GGTNACC | 1 cut(s) | 3628 |
| EcoICRI | GAGCTC | 2 cut(s) | 231, 1219 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2550 |
| EcoO109I | RGGNCCY | 2 cut(s) | 740, 3005 |
| EcoO65I | GGTNACC | 1 cut(s) | 3628 |
| EcoRI | GAATTC | 1 cut(s) | 1336 |
| EcoRII | CCWGG | 7 cut(s) | 612, 747, 1048, 1591, 2430, 3315, 3378 |
| EcoT14I | CCWWGG | 4 cut(s) | 736, 1342, 2378, 2778 |
| EcoT38I | GRGCYC | 2 cut(s) | 233, 1221 |
| EgeI | GGCGCC | 1 cut(s) | 1318 |
| EheI | GGCGCC | 1 cut(s) | 1318 |
| ErhI | CCWWGG | 4 cut(s) | 736, 1342, 2378, 2778 |
| FaqI | GGGAC | 2 cut(s) | 356, 2164 |
| FauI | CCCGC | 4 cut(s) | 974, 2636, 2768, 3553 |
| FbaI | TGATCA | 5 cut(s) | 637, 1171, 1279, 1357, 2968 |
| FblI | GTMKAC | 1 cut(s) | 327 |
| FokI | GGATG | 9 cut(s) | 211, 941, 1179, 1632, 2120, 2204, 2655, 2663, 2934 |
| FriOI | GRGCYC | 2 cut(s) | 233, 1221 |
| FspBI | CTAG | 6 cut(s) | 92, 312, 378, 900, 1161, 2159 |
| GlaI | GCGC | 7 cut(s) | 822, 1318, 1796, 1820, 1844, 1868, 1892 |
| GsuI | CTGGAG | 2 cut(s) | 1976, 3554 |
| HaeII | RGCGCY | 6 cut(s) | 1320, 1798, 1822, 1846, 1870, 1894 |
| HapII | CCGG | 6 cut(s) | 455, 1481, 1585, 2922, 2929, 3640 |
| HhaI | GCGC | 7 cut(s) | 823, 1319, 1797, 1821, 1845, 1869, 1893 |
| Hin1I | GRCGYC | 3 cut(s) | 663, 1317, 3298 |
| Hin6I | GCGC | 7 cut(s) | 821, 1317, 1795, 1819, 1843, 1867, 1891 |
| HinP1I | GCGC | 7 cut(s) | 821, 1317, 1795, 1819, 1843, 1867, 1891 |
| HincII | GTYRAC | 1 cut(s) | 1715 |
| HindII | GTYRAC | 1 cut(s) | 1715 |
| HpaII | CCGG | 6 cut(s) | 455, 1481, 1585, 2922, 2929, 3640 |
| Hpy166II | GTNNAC | 4 cut(s) | 328, 1582, 1715, 3164 |
| Hpy8I | GTNNAC | 4 cut(s) | 328, 1582, 1715, 3164 |
| Hpy99I | CGWCG | 1 cut(s) | 3449 |
| HpyCH4III | ACNGT | 7 cut(s) | 544, 1469, 1521, 1555, 2058, 2883, 3265 |
| HpyCH4IV | ACGT | 4 cut(s) | 351, 1234, 1921, 3321 |
| HpySE526I | ACGT | 4 cut(s) | 351, 1234, 1921, 3321 |
| Hsp92I | GRCGYC | 3 cut(s) | 663, 1317, 3298 |
| HspAI | GCGC | 7 cut(s) | 821, 1317, 1795, 1819, 1843, 1867, 1891 |
| KasI | GGCGCC | 1 cut(s) | 1316 |
| Kpn2I | TCCGGA | 1 cut(s) | 2921 |
| Ksp22I | TGATCA | 5 cut(s) | 637, 1171, 1279, 1357, 2968 |
| LguI | GCTCTTC | 2 cut(s) | 644, 2461 |
| MaeI | CTAG | 6 cut(s) | 92, 312, 378, 900, 1161, 2159 |
| MaeII | ACGT | 4 cut(s) | 351, 1234, 1921, 3321 |
| MaeIII | GTNAC | 9 cut(s) | 287, 457, 471, 544, 685, 1497, 1973, 3265, 3628 |
| MfeI | CAATTG | 3 cut(s) | 1727, 1925, 2518 |
| MflI | RGATCY | 7 cut(s) | 374, 830, 1432, 2027, 3014, 3130, 3657 |
| MhlI | GDGCHC | 6 cut(s) | 233, 1221, 1773, 2049, 2641, 2688 |
| MlsI | TGGCCA | 1 cut(s) | 3555 |
| MluNI | TGGCCA | 1 cut(s) | 3555 |
| Mly113I | GGCGCC | 1 cut(s) | 1317 |
| MlyI | GAGTC | 2 cut(s) | 479, 2759 |
| Mox20I | TGGCCA | 1 cut(s) | 3555 |
| MroI | TCCGGA | 1 cut(s) | 2921 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1521 |
| MscI | TGGCCA | 1 cut(s) | 3555 |
| MseI | TTAA | 8 cut(s) | 392, 440, 503, 596, 1238, 2955, 3624, 3669 |
| MslI | CAYNNNNRTG | 3 cut(s) | 551, 2745, 3476 |
| Msp20I | TGGCCA | 1 cut(s) | 3555 |
| MspA1I | CMGCKG | 5 cut(s) | 1094, 1531, 1954, 3371, 3527 |
| MspI | CCGG | 6 cut(s) | 455, 1481, 1585, 2922, 2929, 3640 |
| MspR9I | CCNGG | 9 cut(s) | 614, 749, 1050, 1481, 1593, 2432, 2930, 3317, 3380 |
| MunI | CAATTG | 3 cut(s) | 1727, 1925, 2518 |
| Mva1269I | GAATGC | 1 cut(s) | 1008 |
| MvaI | CCWGG | 7 cut(s) | 614, 749, 1050, 1593, 2432, 3317, 3380 |
| MvnI | CGCG | 2 cut(s) | 2643, 2763 |
| NarI | GGCGCC | 1 cut(s) | 1317 |
| NciI | CCSGG | 2 cut(s) | 1481, 2930 |
| NcoI | CCATGG | 1 cut(s) | 2778 |
| NlaIV | GGNNCC | 5 cut(s) | 1318, 1348, 1589, 2608, 3537 |
| NmeAIII | GCCGAG | 2 cut(s) | 3326, 3597 |
| NmuCI | GTSAC | 6 cut(s) | 287, 471, 544, 685, 1497, 1973 |
| NspI | RCATGY | 4 cut(s) | 209, 2045, 3402, 3481 |
| OliI | CACNNNNGTG | 1 cut(s) | 551 |
| PaeR7I | CTCGAG | 1 cut(s) | 6 |
| PaqCI | CACCTGC | 1 cut(s) | 4 |
| PceI | AGGCCT | 2 cut(s) | 1057, 1243 |
| PciI | ACATGT | 1 cut(s) | 2041 |
| PciSI | GCTCTTC | 2 cut(s) | 644, 2461 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 669 |
| PctI | GAATGC | 1 cut(s) | 1008 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1521 |
| PfeI | GAWTC | 8 cut(s) | 173, 1762, 2081, 2413, 2524, 2732, 2792, 2936 |
| PfoI | TCCNGGA | 1 cut(s) | 1048 |
| PinAI | ACCGGT | 1 cut(s) | 1584 |
| PleI | GAGTC | 2 cut(s) | 478, 2759 |
| PluTI | GGCGCC | 1 cut(s) | 1320 |
| PpsI | GAGTC | 2 cut(s) | 478, 2759 |
| PpuMI | RGGWCCY | 1 cut(s) | 740 |
| PscI | ACATGT | 1 cut(s) | 2041 |
| Psp124BI | GAGCTC | 2 cut(s) | 233, 1221 |
| Psp5II | RGGWCCY | 1 cut(s) | 740 |
| Psp6I | CCWGG | 7 cut(s) | 612, 747, 1048, 1591, 2430, 3315, 3378 |
| PspEI | GGTNACC | 1 cut(s) | 3628 |
| PspGI | CCWGG | 7 cut(s) | 612, 747, 1048, 1591, 2430, 3315, 3378 |
| PspN4I | GGNNCC | 5 cut(s) | 1318, 1348, 1589, 2608, 3537 |
| PspPI | GGNCC | 6 cut(s) | 740, 884, 1582, 2375, 2851, 3005 |
| PspPPI | RGGWCCY | 1 cut(s) | 740 |
| PspXI | VCTCGAGB | 1 cut(s) | 6 |
| PstI | CTGCAG | 7 cut(s) | 1794, 1818, 1842, 1866, 1890, 2310, 2349 |
| PstNI | CAGNNNCTG | 3 cut(s) | 557, 1531, 3506 |
| PsuI | RGATCY | 7 cut(s) | 374, 830, 1432, 2027, 3014, 3130, 3657 |
| PvuII | CAGCTG | 5 cut(s) | 1094, 1531, 1954, 3371, 3527 |
| RsaI | GTAC | 2 cut(s) | 90, 2943 |
| RsaNI | GTAC | 2 cut(s) | 89, 2942 |
| RseI | CAYNNNNRTG | 3 cut(s) | 551, 2745, 3476 |
| SacI | GAGCTC | 2 cut(s) | 233, 1221 |
| SapI | GCTCTTC | 2 cut(s) | 644, 2461 |
| SaqAI | TTAA | 8 cut(s) | 392, 440, 503, 596, 1238, 2955, 3624, 3669 |
| Sau96I | GGNCC | 6 cut(s) | 740, 884, 1582, 2375, 2851, 3005 |
| SchI | GAGTC | 2 cut(s) | 479, 2759 |
| ScrFI | CCNGG | 9 cut(s) | 614, 749, 1050, 1481, 1593, 2432, 2930, 3317, 3380 |
| SduI | GDGCHC | 6 cut(s) | 233, 1221, 1773, 2049, 2641, 2688 |
| SfcI | CTRYAG | 9 cut(s) | 71, 1428, 1790, 1814, 1838, 1862, 1886, 2306, 2345 |
| SfoI | GGCGCC | 1 cut(s) | 1318 |
| Sfr274I | CTCGAG | 1 cut(s) | 6 |
| SinI | GGWCC | 3 cut(s) | 740, 1582, 2851 |
| SlaI | CTCGAG | 1 cut(s) | 6 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 551, 2745, 3476 |
| SmlI | CTYRAG | 5 cut(s) | 6, 723, 2031, 2188, 3482 |
| SmoI | CTYRAG | 5 cut(s) | 6, 723, 2031, 2188, 3482 |
| SpeI | ACTAGT | 1 cut(s) | 1160 |
| SseBI | AGGCCT | 2 cut(s) | 1057, 1243 |
| SsiI | CCGC | 9 cut(s) | 624, 981, 2105, 2325, 2643, 2761, 3416, 3560, 3565 |
| SspDI | GGCGCC | 1 cut(s) | 1316 |
| SspMI | CTAG | 6 cut(s) | 92, 312, 378, 900, 1161, 2159 |
| SstI | GAGCTC | 2 cut(s) | 233, 1221 |
| StuI | AGGCCT | 2 cut(s) | 1057, 1243 |
| StyD4I | CCNGG | 9 cut(s) | 612, 747, 1048, 1479, 1591, 2430, 2928, 3315, 3378 |
| StyI | CCWWGG | 4 cut(s) | 736, 1342, 2378, 2778 |
| TaaI | ACNGT | 7 cut(s) | 544, 1469, 1521, 1555, 2058, 2883, 3265 |
| TaiI | ACGT | 4 cut(s) | 354, 1237, 1924, 3324 |
| TaqI | TCGA | 7 cut(s) | 7, 176, 233, 717, 756, 1082, 2130 |
| TatI | WGTACW | 2 cut(s) | 88, 2941 |
| TfiI | GAWTC | 8 cut(s) | 173, 1762, 2081, 2413, 2524, 2732, 2792, 2936 |
| Tru1I | TTAA | 8 cut(s) | 392, 440, 503, 596, 1238, 2955, 3624, 3669 |
| Tru9I | TTAA | 8 cut(s) | 392, 440, 503, 596, 1238, 2955, 3624, 3669 |
| TscAI | CASTG | 8 cut(s) | 322, 558, 1075, 1474, 1656, 2102, 3178, 3537 |
| TseFI | GTSAC | 6 cut(s) | 287, 471, 544, 685, 1497, 1973 |
| Tsp45I | GTSAC | 6 cut(s) | 287, 471, 544, 685, 1497, 1973 |
| TspRI | CASTG | 8 cut(s) | 322, 558, 1075, 1474, 1656, 2102, 3178, 3537 |
| VpaK11BI | GGWCC | 3 cut(s) | 740, 1582, 2851 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2550 |
| XapI | RAATTY | 5 cut(s) | 878, 1336, 2579, 2864, 3419 |
| XbaI | TCTAGA | 1 cut(s) | 2158 |
| XceI | RCATGY | 4 cut(s) | 209, 2045, 3402, 3481 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3031 |
| XhoI | CTCGAG | 1 cut(s) | 6 |
| XmiI | GTMKAC | 1 cut(s) | 327 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1521 |
| XspI | CTAG | 6 cut(s) | 92, 312, 378, 900, 1161, 2159 |