Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003475

Physical Location & Seq

Genomic Coordinates Reverse (-)

71132300 .. 71133025

Gene Structure 726 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0589300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGACTATTCTACCCCCAAAATCCTTTTTTTATTTTTTCTCTCTTTTTTTTATTTATTTTTTCTGCTTTTCTCTCTCTCCCTCTCCACATATCGATCTTCTCTCTCTTTTTTCAATTTCTTTCTGCTTTTCTCTCTCTCCCTCTCCACAGACCAACCTCGAACTCTTCTCCGCCGAACTGAGGGCCGACGACGACCCCCGACCCGAAACCGCCAGAGATCTAAGTCACCAGTCCATCAGAAGCGAAACCGCCGTCGACCGCTCGGCCCAGACCCGTAGAACCGGCGTCACTTCCACCGTCTCACCCCCCTCCGCTACTCGCCGCTCCCGGAAAGCCCTACCCCGAACTAAGCGACCTCGCTGGCTCAGGTTCGTTCGTATTTTCGGCAAGTGGTTCGTTCTTCTTGTTTTCGCTGGTGGTTTGGCCCAGATACTCATGCGCCTTGCTTACGGCTCCACTTCCACCGCCGCCGTGCCCATGGCGTTTACCGACTTGGAGGGTCGGATTGCGGAGGTCGAAGCGTCGATGAAGGAGACCTCTAGGATGCTTCAGGTTGGGGTGGACGTGGCGAGCCGGAAGATCGATAAGGAGGTCGGAGAGTTGAGGAAGGAAGTGGAGGACAGGGGGGTTTTTTTGGCCGGTGAATTGAGGAAATTGGAGGCTAAAAGTGAAGGGCTGGAGAGGTCCGTGGAGGAATTGAAAAGCGTGGAGTGGCTGTCAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GYF

Protein Analysis

241

Amino Acids

27.26

Weight (kDa)

9.17

Isoelectric Point (pI)

54.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003475)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g53851 FvH4_6g53851 FvH4_6g53851 FvH4_6g53851 FvH4_6g53851
malus_domestica	MD09G1007900.v1.1 MD17G1002800.v1.1
prunus_persica	Prupe.3G309100_v2.0.a1 Prupe.3G309100_v2.0.a1 Prupe.3G309100_v2.0.a1 Prupe.3G309100_v2.0.a1 Prupe.3G309100_v2.0.a1 Prupe.3G309100_v2.0.a1 Prupe.3G309100_v2.0.a1 Prupe.3G309100_v2.0.a1 Prupe.3G309100_v2.0.a1 Prupe.3G309100_v2.0.a1 Prupe.3G309100_v2.0.a1 Prupe.3G309100_v2.0.a1 Prupe.3G309100_v2.0.a1
pyrus_communis	pycom111g00620 pycom111g00630 pycom17g00650 pycom17g00660
rosa_chinensis	RchiOBHm_Chr2g0176001
rosa_laevigata	RLG00000022372
rosa_roxburghii	Rroxscaffold_2G00076860 Rroxscaffold_2G00076870
rosa_rugosa	Rorug02G0589300 Rorug02G0589400 Rorug02G0589400
rosa_samantha	Rh2AG668500 Rh2BG680000 Rh2CG642900 Rh2DG693700
rosa_wichuraiana	Rw2G054810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	261, 324
AccI	GTMKAC	1 cut(s)	255
AciI	CCGC	9 cut(s)	171, 210, 249, 259, 312, 322, 465, 468, 509
AcoI	YGGCCR	1 cut(s)	636
AcuI	CTGAAG	1 cut(s)	533
AcyI	GRCGYC	1 cut(s)	285
AfiI	CCNNNNNNNGG	1 cut(s)	180
AgsI	TTSAA	2 cut(s)	114, 700
AjiI	CACGTC	1 cut(s)	565
Alw26I	GTCTC	2 cut(s)	304, 527
AoxI	GGCC	4 cut(s)	183, 264, 423, 636
ArsI	GACNNNNNNTTYG	2 cut(s)	237, 269
AspLEI	GCGC	1 cut(s)	441
AspS9I	GGNCC	4 cut(s)	183, 265, 424, 684
AsuC2I	CCSGG	1 cut(s)	328
AsuHPI	GGTGA	3 cut(s)	218, 294, 653
AvaII	GGWCC	1 cut(s)	684
BaeGI	GKGCMC	1 cut(s)	477
BccI	CCATC	1 cut(s)	242
BceAI	ACGGC	3 cut(s)	236, 455, 466
BcgI	CGANNNNNNTGC	2 cut(s)	376, 410
BcnI	CCSGG	1 cut(s)	328
BcoDI	GTCTC	2 cut(s)	304, 527
BfaI	CTAG	1 cut(s)	540
BglII	AGATCT	1 cut(s)	217
BisI	GCNGC	2 cut(s)	322, 468
BlsI	GCNGC	2 cut(s)	323, 469
Bme1390I	CCNGG	1 cut(s)	328
Bme18I	GGWCC	1 cut(s)	684
BmgBI	CACGTC	1 cut(s)	565
BmgT120I	GGNCC	4 cut(s)	183, 265, 424, 684
BmiI	GGNNCC	1 cut(s)	454
BmrFI	CCNGG	1 cut(s)	328
BmsI	GCATC	1 cut(s)	534
BpmI	CTGGAG	1 cut(s)	698
Bpu10I	CCTNAGC	1 cut(s)	365
BpuMI	CCSGG	1 cut(s)	328
Bsa29I	ATCGAT	2 cut(s)	93, 582
BsaHI	GRCGYC	1 cut(s)	285
BsaI	GGTCTC	1 cut(s)	527
BsaJI	CCNNGG	2 cut(s)	477, 687
BsaXI	ACNNNNNCTCC	1 cut(s)	701
Bsc4I	CCNNNNNNNGG	1 cut(s)	180
Bse118I	RCCGGY	2 cut(s)	281, 638
Bse1I	ACTGG	1 cut(s)	229
BseCI	ATCGAT	2 cut(s)	93, 582
BseDI	CCNNGG	2 cut(s)	477, 687
BseGI	GGATG	1 cut(s)	549
BseLI	CCNNNNNNNGG	1 cut(s)	180
BseMII	CTCAG	2 cut(s)	170, 379
BseNI	ACTGG	1 cut(s)	229
BseSI	GKGCMC	1 cut(s)	477
Bsh1285I	CGRYCG	1 cut(s)	259
BshFI	GGCC	4 cut(s)	185, 266, 425, 638
BshVI	ATCGAT	2 cut(s)	93, 582
BsiEI	CGRYCG	1 cut(s)	259
BsiSI	CCGG	4 cut(s)	282, 328, 574, 639
BslI	CCNNNNNNNGG	1 cut(s)	180
BsmAI	GTCTC	2 cut(s)	304, 527
BsmBI	CGTCTC	1 cut(s)	304
BsnI	GGCC	4 cut(s)	185, 266, 425, 638
Bso31I	GGTCTC	1 cut(s)	527
Bsp1286I	GDGCHC	1 cut(s)	477
Bsp143I	GATC	3 cut(s)	94, 217, 579
Bsp19I	CCATGG	1 cut(s)	477
BspACI	CCGC	9 cut(s)	171, 210, 249, 259, 312, 322, 465, 468, 509
BspANI	GGCC	4 cut(s)	185, 266, 425, 638
BspCNI	CTCAG	2 cut(s)	171, 378
BspDI	ATCGAT	2 cut(s)	93, 582
BspLI	GGNNCC	1 cut(s)	454
BspTNI	GGTCTC	1 cut(s)	527
BsrBI	CCGCTC	2 cut(s)	261, 324
BsrFI	RCCGGY	2 cut(s)	281, 638
BsrI	ACTGG	1 cut(s)	229
BssAI	RCCGGY	2 cut(s)	281, 638
BssECI	CCNNGG	2 cut(s)	477, 687
BssMI	GATC	3 cut(s)	94, 217, 579
BssNI	GRCGYC	1 cut(s)	285
BssT1I	CCWWGG	1 cut(s)	477
Bst4CI	ACNGT	1 cut(s)	298
Bst6I	CTCTTC	1 cut(s)	170
BstACI	GRCGYC	1 cut(s)	285
BstC8I	GCNNGC	2 cut(s)	362, 571
BstDEI	CTNAG	4 cut(s)	179, 221, 348, 365
BstDSI	CCRYGG	2 cut(s)	477, 687
BstF5I	GGATG	1 cut(s)	549
BstHHI	GCGC	1 cut(s)	441
BstKTI	GATC	3 cut(s)	97, 220, 582
BstMAI	GTCTC	2 cut(s)	304, 527
BstMBI	GATC	3 cut(s)	94, 217, 579
BstMCI	CGRYCG	1 cut(s)	259
BstSCI	CCNGG	1 cut(s)	326
BstSLI	GKGCMC	1 cut(s)	477
BstX2I	RGATCY	1 cut(s)	217
BstYI	RGATCY	1 cut(s)	217
Bsu15I	ATCGAT	2 cut(s)	93, 582
BsuRI	GGCC	4 cut(s)	185, 266, 425, 638
BsuTUI	ATCGAT	2 cut(s)	93, 582
BtgI	CCRYGG	2 cut(s)	477, 687
BtrI	CACGTC	1 cut(s)	565
BtsCI	GGATG	1 cut(s)	549
Cac8I	GCNNGC	2 cut(s)	362, 571
CfoI	GCGC	1 cut(s)	441
Cfr10I	RCCGGY	2 cut(s)	281, 638
Cfr13I	GGNCC	4 cut(s)	183, 265, 424, 684
ClaI	ATCGAT	2 cut(s)	93, 582
CseI	GACGC	2 cut(s)	274, 510
CviAII	CATG	2 cut(s)	436, 478
DdeI	CTNAG	4 cut(s)	179, 221, 348, 365
DpnI	GATC	3 cut(s)	96, 219, 581
DpnII	GATC	3 cut(s)	94, 217, 579
EaeI	YGGCCR	1 cut(s)	636
Eam1104I	CTCTTC	1 cut(s)	170
EarI	CTCTTC	1 cut(s)	170
EciI	GGCGGA	1 cut(s)	160
Eco130I	CCWWGG	1 cut(s)	477
Eco31I	GGTCTC	1 cut(s)	527
Eco47I	GGWCC	1 cut(s)	684
Eco57I	CTGAAG	1 cut(s)	533
EcoT14I	CCWWGG	1 cut(s)	477
ErhI	CCWWGG	1 cut(s)	477
Esp3I	CGTCTC	1 cut(s)	304
FaeI	CATG	2 cut(s)	439, 481
FaiI	YATR	3 cut(s)	90, 437, 479
FatI	CATG	2 cut(s)	435, 477
FblI	GTMKAC	1 cut(s)	255
Fnu4HI	GCNGC	2 cut(s)	322, 468
FokI	GGATG	1 cut(s)	556
Fsp4HI	GCNGC	2 cut(s)	322, 468
FspBI	CTAG	1 cut(s)	540
GlaI	GCGC	1 cut(s)	440
GluI	GCNGC	2 cut(s)	322, 468
GsuI	CTGGAG	1 cut(s)	698
HaeIII	GGCC	4 cut(s)	185, 266, 425, 638
HapII	CCGG	4 cut(s)	282, 328, 574, 639
HgaI	GACGC	2 cut(s)	274, 510
HhaI	GCGC	1 cut(s)	441
Hin1I	GRCGYC	1 cut(s)	285
Hin1II	CATG	2 cut(s)	439, 481
Hin6I	GCGC	1 cut(s)	439
HinP1I	GCGC	1 cut(s)	439
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HpaII	CCGG	4 cut(s)	282, 328, 574, 639
HphI	GGTGA	3 cut(s)	218, 294, 653
Hpy166II	GTNNAC	3 cut(s)	256, 486, 562
Hpy188I	TCNGA	4 cut(s)	239, 504, 596, 721
Hpy8I	GTNNAC	3 cut(s)	256, 486, 562
Hpy99I	CGWCG	4 cut(s)	191, 194, 257, 526
HpyAV	CCTTC	3 cut(s)	523, 601, 665
HpyCH4III	ACNGT	1 cut(s)	298
HpyCH4IV	ACGT	1 cut(s)	564
HpyF3I	CTNAG	4 cut(s)	179, 221, 348, 365
HpySE526I	ACGT	1 cut(s)	564
Hsp92I	GRCGYC	1 cut(s)	285
Hsp92II	CATG	2 cut(s)	439, 481
HspAI	GCGC	1 cut(s)	439
Kzo9I	GATC	3 cut(s)	94, 217, 579
LmnI	GCTCC	2 cut(s)	329, 458
LweI	GCATC	1 cut(s)	534
MaeI	CTAG	1 cut(s)	540
MaeII	ACGT	1 cut(s)	564
MaeIII	GTNAC	2 cut(s)	224, 286
MalI	GATC	3 cut(s)	96, 219, 581
MbiI	CCGCTC	2 cut(s)	261, 324
MboI	GATC	3 cut(s)	94, 217, 579
MboII	GAAGA	4 cut(s)	89, 157, 392, 589
MflI	RGATCY	1 cut(s)	217
MhlI	GDGCHC	1 cut(s)	477
MluCI	AATT	4 cut(s)	114, 644, 653, 695
MmeI	TCCRAC	2 cut(s)	482, 574
MspI	CCGG	4 cut(s)	282, 328, 574, 639
MspR9I	CCNGG	1 cut(s)	328
NciI	CCSGG	1 cut(s)	328
NcoI	CCATGG	1 cut(s)	477
NdeII	GATC	3 cut(s)	94, 217, 579
NlaIII	CATG	2 cut(s)	439, 481
NlaIV	GGNNCC	1 cut(s)	454
NmeAIII	GCCGAG	1 cut(s)	242
NmuCI	GTSAC	2 cut(s)	224, 286
PfoI	TCCNGGA	1 cut(s)	326
PkrI	GCNGC	2 cut(s)	323, 469
PspN4I	GGNNCC	1 cut(s)	454
PspPI	GGNCC	4 cut(s)	183, 265, 424, 684
PsuI	RGATCY	1 cut(s)	217
SalI	GTCGAC	1 cut(s)	254
SatI	GCNGC	2 cut(s)	322, 468
Sau3AI	GATC	3 cut(s)	94, 217, 579
Sau96I	GGNCC	4 cut(s)	183, 265, 424, 684
ScrFI	CCNGG	1 cut(s)	328
SduI	GDGCHC	1 cut(s)	477
SetI	ASST	9 cut(s)	159, 358, 371, 516, 539, 555, 567, 594, 686
SfaNI	GCATC	1 cut(s)	534
SinI	GGWCC	1 cut(s)	684
Sse9I	AATT	4 cut(s)	114, 644, 653, 695
SsiI	CCGC	9 cut(s)	171, 210, 249, 259, 312, 322, 465, 468, 509
SspMI	CTAG	1 cut(s)	540
StyD4I	CCNGG	1 cut(s)	326
StyI	CCWWGG	1 cut(s)	477
TaaI	ACNGT	1 cut(s)	298
TaiI	ACGT	1 cut(s)	567
TaqI	TCGA	6 cut(s)	93, 159, 255, 516, 524, 582
TasI	AATT	4 cut(s)	114, 644, 653, 695
TauI	GCSGC	2 cut(s)	324, 470
TseFI	GTSAC	2 cut(s)	224, 286
Tsp45I	GTSAC	2 cut(s)	224, 286
TspDTI	ATGAA	1 cut(s)	542
TspGWI	ACGGA	1 cut(s)	676
VpaK11BI	GGWCC	1 cut(s)	684
XmiI	GTMKAC	1 cut(s)	255
XspI	CTAG	1 cut(s)	540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.