Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0008213

Physical Location & Seq

Genomic Coordinates Forward (+)

2296857 .. 2297986

Gene Structure 1130 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGGTCAATCACTCGGTTGTGTTCAAGTGAAGCAGTCAAATGTTGCTGTGAGGGAACAATTTGGGAAGTTTGATGGTGTGCTTGAACCAGGATTGCATTGCATGCCCTGGTGTTTCGGGTACAAGGTAGCTGGTGATCTCTCACTGCGCGTGCGACAACTTCAAGTTCATTGCGAAAGCAAGACCAAGGATAATATGTTTGTGAAAGTGGCTGCATCGATTCACTATCGCCCCTTTCCAGACAAGATACCGGATGCTTTCTACAAGCTCTTGAATGCCGACTCACAGATTCGGGCTTATGTGTTTGATGTTATTAGGGAAACTGTGCCGAAATTGGAGCTTGATACCGTCTTTGAGCAGAAAAGTGACATAGCAAAAGCTGTTCAAAAGGAACTTGCAAAGGCTATGTATGATTATGGTTTTGAAATAGTCCAGACCCTGATTGTGGATATTGCACCACATATTGTAGTGATGAATGCGATGCATGAGATCAATGCAGCTGCAAGGAAGAGACTGGTGGCGGAAGAGAAGGGGGAAGAAGAGAAAATCCTGAAGATCAAGCGAGCGGAAGGAGAGGCAGAGTCCAGGCACTTGGTAGGGCTCGGCATAGCGCGCCAGAGCCAGGCCATTATTGGAGGGCTGAAGGACAGCGTGCTCGACTGTTTTACAGAGATTATGCTAAAGAGGGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005911 GO:0009506 GO:0012505 GO:0016020 GO:0019899 GO:0019900 GO:0019901 GO:0030054 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Band_7

Protein Analysis

231

Amino Acids

25.82

Weight (kDa)

7.65

Isoelectric Point (pI)

48.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Band_7	PF01145	9 - 181	2e-27	SPFH domain / Band 7 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008213)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62740
malus_domestica	MD09G1046900.v1.1 MD09G1047000.v1.1
prunus_persica	Prupe.3G271900_v2.0.a1 Prupe.3G271900_v2.0.a1 Prupe.3G271900_v2.0.a1
pyrus_communis	pycom111g03740 pycom111g03760
rosa_chinensis	RchiOBHm_Chr2g0169121 RchiOBHm_Chr2g0169141
rosa_laevigata	RLG00000021837
rosa_multiflora	Rmu_sc0006812.1_g000002
rosa_roxburghii	Rroxscaffold_2G00082400 Rroxscaffold_2G00082420
rosa_rugosa	Rorug02G0537100 Rorug02G0537500
rosa_samantha	Rh2AG609000 Rh2BG621900 Rh2CG590600 Rh2CG590800 Rh2DG632500
rosa_wichuraiana	Rw2G050500 Rw2G050520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	566
AccII	CGCG	2 cut(s)	150, 613
AciI	CCGC	2 cut(s)	521, 566
AcuI	CTGAAG	2 cut(s)	572, 662
AfaI	GTAC	1 cut(s)	122
AfiI	CCNNNNNNNGG	2 cut(s)	445, 622
AgsI	TTSAA	6 cut(s)	26, 86, 164, 274, 386, 425
AjnI	CCWGG	4 cut(s)	88, 107, 584, 621
AluBI	AGCT	5 cut(s)	131, 268, 340, 380, 500
AluI	AGCT	5 cut(s)	131, 268, 340, 380, 500
Alw21I	GWGCWC	1 cut(s)	657
Alw26I	GTCTC	1 cut(s)	505
AlwNI	CAGNNNCTG	1 cut(s)	439
AoxI	GGCC	1 cut(s)	624
ApeKI	GCWGC	3 cut(s)	212, 497, 500
AspLEI	GCGC	3 cut(s)	150, 613, 615
AsuHPI	GGTGA	1 cut(s)	146
BanII	GRGCYC	1 cut(s)	603
Bbv12I	GWGCWC	1 cut(s)	657
BbvI	GCAGC	3 cut(s)	199, 487, 509
BccI	CCATC	1 cut(s)	68
BciT130I	CCWGG	4 cut(s)	90, 109, 586, 623
BcoDI	GTCTC	1 cut(s)	505
BisI	GCNGC	3 cut(s)	213, 498, 501
BlsI	GCNGC	3 cut(s)	214, 499, 502
Bme1390I	CCNGG	4 cut(s)	90, 109, 586, 623
BmrFI	CCNGG	4 cut(s)	90, 109, 586, 623
BmsI	GCATC	3 cut(s)	224, 244, 471
Bsa29I	ATCGAT	1 cut(s)	218
BsaJI	CCNNGG	2 cut(s)	107, 186
BsaWI	WCCGGW	1 cut(s)	250
Bsc4I	CCNNNNNNNGG	2 cut(s)	445, 622
Bse1I	ACTGG	1 cut(s)	519
Bse3DI	GCAATG	2 cut(s)	97, 169
BseBI	CCWGG	4 cut(s)	90, 109, 586, 623
BseCI	ATCGAT	1 cut(s)	218
BseDI	CCNNGG	2 cut(s)	107, 186
BseGI	GGATG	1 cut(s)	259
BseLI	CCNNNNNNNGG	2 cut(s)	445, 622
BseMI	GCAATG	2 cut(s)	97, 169
BseNI	ACTGG	1 cut(s)	519
BsePI	GCGCGC	1 cut(s)	611
BseXI	GCAGC	3 cut(s)	199, 487, 509
Bsh1236I	CGCG	2 cut(s)	150, 613
BshFI	GGCC	1 cut(s)	626
BshVI	ATCGAT	1 cut(s)	218
BsiHKAI	GWGCWC	1 cut(s)	657
BsiSI	CCGG	1 cut(s)	251
BslI	CCNNNNNNNGG	2 cut(s)	445, 622
BsmAI	GTCTC	1 cut(s)	505
BsmI	GAATGC	2 cut(s)	280, 481
BsnI	GGCC	1 cut(s)	626
Bsp1286I	GDGCHC	2 cut(s)	603, 657
Bsp143I	GATC	3 cut(s)	136, 489, 555
BspACI	CCGC	2 cut(s)	521, 566
BspANI	GGCC	1 cut(s)	626
BspDI	ATCGAT	1 cut(s)	218
BspFNI	CGCG	2 cut(s)	150, 613
BsrBI	CCGCTC	1 cut(s)	566
BsrDI	GCAATG	2 cut(s)	97, 169
BsrI	ACTGG	1 cut(s)	519
BssECI	CCNNGG	2 cut(s)	107, 186
BssHII	GCGCGC	1 cut(s)	611
BssMI	GATC	3 cut(s)	136, 489, 555
BssT1I	CCWWGG	1 cut(s)	186
Bst2UI	CCWGG	4 cut(s)	90, 109, 586, 623
Bst4CI	ACNGT	3 cut(s)	325, 349, 662
Bst6I	CTCTTC	3 cut(s)	503, 519, 534
BstAPI	GCANNNNNTGC	1 cut(s)	103
BstC8I	GCNNGC	5 cut(s)	104, 152, 564, 613, 653
BstF5I	GGATG	1 cut(s)	259
BstFNI	CGCG	2 cut(s)	150, 613
BstHHI	GCGC	3 cut(s)	150, 613, 615
BstKTI	GATC	3 cut(s)	139, 492, 558
BstMAI	GTCTC	1 cut(s)	505
BstMBI	GATC	3 cut(s)	136, 489, 555
BstMWI	GCNNNNNNNGC	2 cut(s)	103, 612
BstNI	CCWGG	4 cut(s)	90, 109, 586, 623
BstNSI	RCATGY	1 cut(s)	106
BstSCI	CCNGG	4 cut(s)	88, 107, 584, 621
BstUI	CGCG	2 cut(s)	150, 613
BstV1I	GCAGC	3 cut(s)	199, 487, 509
BstXI	CCANNNNNNTGG	1 cut(s)	592
Bsu15I	ATCGAT	1 cut(s)	218
BsuRI	GGCC	1 cut(s)	626
BsuTUI	ATCGAT	1 cut(s)	218
BtgZI	GCGATG	1 cut(s)	494
BtsCI	GGATG	1 cut(s)	259
BtsI	GCAGTG	1 cut(s)	143
BtsIMutI	CAGTG	1 cut(s)	143
Cac8I	GCNNGC	5 cut(s)	104, 152, 564, 613, 653
CaiI	CAGNNNCTG	1 cut(s)	439
CfoI	GCGC	3 cut(s)	150, 613, 615
ClaI	ATCGAT	1 cut(s)	218
Csp6I	GTAC	1 cut(s)	121
CviAII	CATG	2 cut(s)	103, 485
CviQI	GTAC	1 cut(s)	121
DpnI	GATC	3 cut(s)	138, 491, 557
DpnII	GATC	3 cut(s)	136, 489, 555
Eam1104I	CTCTTC	3 cut(s)	503, 519, 534
EarI	CTCTTC	3 cut(s)	503, 519, 534
EciI	GGCGGA	1 cut(s)	536
Eco130I	CCWWGG	1 cut(s)	186
Eco24I	GRGCYC	1 cut(s)	603
Eco57I	CTGAAG	2 cut(s)	572, 662
EcoRII	CCWGG	4 cut(s)	88, 107, 584, 621
EcoT14I	CCWWGG	1 cut(s)	186
EcoT22I	ATGCAT	1 cut(s)	486
EcoT38I	GRGCYC	1 cut(s)	603
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	2 cut(s)	106, 488
FatI	CATG	2 cut(s)	102, 484
Fnu4HI	GCNGC	3 cut(s)	213, 498, 501
FokI	GGATG	1 cut(s)	266
FriOI	GRGCYC	1 cut(s)	603
Fsp4HI	GCNGC	3 cut(s)	213, 498, 501
GlaI	GCGC	3 cut(s)	149, 612, 614
GluI	GCNGC	3 cut(s)	213, 498, 501
HaeIII	GGCC	1 cut(s)	626
HapII	CCGG	1 cut(s)	251
HhaI	GCGC	3 cut(s)	150, 613, 615
Hin1II	CATG	2 cut(s)	106, 488
Hin6I	GCGC	3 cut(s)	148, 611, 613
HinP1I	GCGC	3 cut(s)	148, 611, 613
HinfI	GANTC	4 cut(s)	220, 281, 289, 581
HpaII	CCGG	1 cut(s)	251
HphI	GGTGA	1 cut(s)	146
Hpy188III	TCNNGA	4 cut(s)	239, 271, 433, 550
HpyAV	CCTTC	3 cut(s)	523, 563, 637
HpyCH4III	ACNGT	3 cut(s)	325, 349, 662
HpyCH4V	TGCA	8 cut(s)	97, 102, 215, 398, 455, 484, 497, 503
HpyF10VI	GCNNNNNNNGC	2 cut(s)	103, 612
Hsp92II	CATG	2 cut(s)	106, 488
HspAI	GCGC	3 cut(s)	148, 611, 613
Kzo9I	GATC	3 cut(s)	136, 489, 555
LmnI	GCTCC	1 cut(s)	337
Lsp1109I	GCAGC	3 cut(s)	199, 487, 509
LweI	GCATC	3 cut(s)	224, 244, 471
MaeIII	GTNAC	1 cut(s)	365
MalI	GATC	3 cut(s)	138, 491, 557
MbiI	CCGCTC	1 cut(s)	566
MboI	GATC	3 cut(s)	136, 489, 555
MboII	GAAGA	5 cut(s)	520, 536, 548, 551, 565
MhlI	GDGCHC	2 cut(s)	603, 657
MluCI	AATT	2 cut(s)	59, 332
MlyI	GAGTC	2 cut(s)	275, 590
MnlI	CCTC	4 cut(s)	45, 568, 629, 678
Mph1103I	ATGCAT	1 cut(s)	486
MspA1I	CMGCKG	1 cut(s)	500
MspI	CCGG	1 cut(s)	251
MspR9I	CCNGG	4 cut(s)	90, 109, 586, 623
Mva1269I	GAATGC	2 cut(s)	280, 481
MvaI	CCWGG	4 cut(s)	90, 109, 586, 623
MvnI	CGCG	2 cut(s)	150, 613
MwoI	GCNNNNNNNGC	2 cut(s)	103, 612
NdeII	GATC	3 cut(s)	136, 489, 555
NlaIII	CATG	2 cut(s)	106, 488
NmeAIII	GCCGAG	1 cut(s)	582
NmuCI	GTSAC	1 cut(s)	365
NsiI	ATGCAT	1 cut(s)	486
NspI	RCATGY	1 cut(s)	106
PaeI	GCATGC	1 cut(s)	106
PauI	GCGCGC	1 cut(s)	611
PctI	GAATGC	2 cut(s)	280, 481
PfeI	GAWTC	2 cut(s)	220, 289
PkrI	GCNGC	3 cut(s)	214, 499, 502
PleI	GAGTC	2 cut(s)	275, 589
PpsI	GAGTC	2 cut(s)	275, 589
Psp6I	CCWGG	4 cut(s)	88, 107, 584, 621
PspGI	CCWGG	4 cut(s)	88, 107, 584, 621
PstNI	CAGNNNCTG	1 cut(s)	439
PteI	GCGCGC	1 cut(s)	611
PvuII	CAGCTG	1 cut(s)	500
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
SatI	GCNGC	3 cut(s)	213, 498, 501
Sau3AI	GATC	3 cut(s)	136, 489, 555
SchI	GAGTC	2 cut(s)	275, 590
ScrFI	CCNGG	4 cut(s)	90, 109, 586, 623
SduI	GDGCHC	2 cut(s)	603, 657
SetI	ASST	6 cut(s)	129, 133, 270, 342, 382, 502
SfaNI	GCATC	3 cut(s)	224, 244, 471
SphI	GCATGC	1 cut(s)	106
Sse9I	AATT	2 cut(s)	59, 332
SsiI	CCGC	2 cut(s)	521, 566
StyD4I	CCNGG	4 cut(s)	88, 107, 584, 621
StyI	CCWWGG	1 cut(s)	186
TaaI	ACNGT	3 cut(s)	325, 349, 662
TaqI	TCGA	2 cut(s)	218, 657
TasI	AATT	2 cut(s)	59, 332
TfiI	GAWTC	2 cut(s)	220, 289
TscAI	CASTG	1 cut(s)	150
TseFI	GTSAC	1 cut(s)	365
TseI	GCWGC	3 cut(s)	212, 497, 500
Tsp45I	GTSAC	1 cut(s)	365
TspDTI	ATGAA	2 cut(s)	158, 488
TspRI	CASTG	1 cut(s)	150
XceI	RCATGY	1 cut(s)	106
XcmI	CCANNNNNNNNNTGG	1 cut(s)	629
Zsp2I	ATGCAT	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.