Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0002597

Physical Location & Seq

Genomic Coordinates Forward (+)

4894465 .. 4895409

Gene Structure 945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g06420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGAAGAAAGTGGAAATAGTGTTCATCCCATCACCAGGAGCAGGCCACCTTGTACCAACGCTGCAATTCGCAAAGCGTTTGATGGATCGCAACGACAGAATTTCGATCACCATTCTTGCCATCCAGTCATCCTTCCCAACCACTCTAAGTTCATACACAAAATCGATTGCAGCCTCAGAACCCCGAATCCGATTCATTGATGTCCCACAACCTCAAGATCGACCTCCGCAAGAGATGTACAAGTCACCAGCAAAGTTCTTCTCTCTTTACATTGAGAGTCACGTCCCCAGTGTCAAGAAAATCATCACCAACCTCGTCTCCTCTAGTGCTAATAGTTCAGATTCGAGTCGTGTTGCTGCTTTGGCAGTTGATTTCTTCTGTGTGTCCATGATTGATGTGGCCAAAGAACTTAATATTCCTTCTTATCTTTTCCTGACAAGCAATGCAGGATATCTAGCTTTCATGCTCCACCTTCCAATTCTTCATGAAAAAAACCAGATTGCTGTTGAAGTATCAGATCGATCCGGAATGGTCAATCCCAGGTATTGTCCACCCTGTTCCTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0008150 GO:0008152 GO:0008194 GO:0009414 GO:0009415 GO:0009628 GO:0009687 GO:0009819 GO:0009987 GO:0010029 GO:0010030 GO:0010035 GO:0010294 GO:0016740 GO:0016757 GO:0016758 GO:0019752 GO:0032787 GO:0035251 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048518 GO:0048580 GO:0048582 GO:0048878 GO:0050789 GO:0050793 GO:0050801 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0055081 GO:0055088 GO:0065007 GO:0065008 GO:0071704 GO:0080043 GO:0080044 GO:0080045 GO:1900140 GO:1901615 GO:1901700 GO:1902265 GO:1902644 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

189

Amino Acids

20.84

Weight (kDa)

9.01

Isoelectric Point (pI)

54.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07250 AT1G07260 AT2G29710 AT2G29730 AT2G29740 AT2G29750
fragaria_vesca	FvH4_3g38400
malus_domestica	MD11G1076200.v1.1 MD11G1076600.v1.1 MD11G1076800.v1.1
prunus_persica	Prupe.6G058900_v2.0.a1 Prupe.6G059000_v2.0.a1
pyrus_communis	pycom11g06400 pycom11g06420 pycom11g06440 pycom11g06460 pycom11g06470
rosa_chinensis	RchiOBHm_Chr5g0069021
rosa_laevigata	RLG00000020959 RLG00000022423 RLG00000036031
rosa_multiflora	Rmu_sc0000853.1_g000006 Rmu_sc0000853.1_g000007 Rmu_sc0000936.1_g000005 Rmu_sc0001913.1_g000022 Rmu_sc0003814.1_g000006 Rmu_sc0006282.1_g000037
rosa_roxburghii	Rroxscaffold_1G00004260 Rroxscaffold_1G00011700
rosa_rugosa	Rorug05G0395700 Rorug07G0215100
rosa_samantha	Rh1BG061100 Rh5BG471600 Rh5CG494000 Rh5DG484200 Rh6CG276400 Rh7BG348600
rosa_wichuraiana	Rw0G006100 Rw2G043210 Rw5G042260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	524
AciI	CCGC	1 cut(s)	227
AclWI	GGATC	2 cut(s)	93, 516
AcoI	YGGCCR	1 cut(s)	399
AcsI	RAATTY	1 cut(s)	99
AfaI	GTAC	2 cut(s)	54, 239
AfiI	CCNNNNNNNGG	2 cut(s)	35, 41
AgsI	TTSAA	1 cut(s)	509
AjiI	CACGTC	1 cut(s)	283
AjnI	CCWGG	2 cut(s)	34, 539
AloI	GAACNNNNNNTCC	3 cut(s)	37, 171, 203
AluBI	AGCT	1 cut(s)	458
AluI	AGCT	1 cut(s)	458
Alw26I	GTCTC	1 cut(s)	322
AlwI	GGATC	2 cut(s)	93, 516
Aor13HI	TCCGGA	1 cut(s)	524
AoxI	GGCC	2 cut(s)	43, 399
ApeKI	GCWGC	3 cut(s)	61, 170, 356
ApoI	RAATTY	1 cut(s)	99
AsuHPI	GGTGA	4 cut(s)	24, 100, 237, 298
BalI	TGGCCA	1 cut(s)	401
BbvI	GCAGC	3 cut(s)	48, 182, 343
BccI	CCATC	3 cut(s)	37, 76, 128
BciT130I	CCWGG	2 cut(s)	36, 541
BcoDI	GTCTC	1 cut(s)	322
BfaI	CTAG	3 cut(s)	324, 455, 565
BisI	GCNGC	3 cut(s)	62, 171, 357
BlsI	GCNGC	3 cut(s)	63, 172, 358
Bme1390I	CCNGG	2 cut(s)	36, 541
BmgBI	CACGTC	1 cut(s)	283
BmrFI	CCNGG	2 cut(s)	36, 541
BmrI	ACTGGG	1 cut(s)	282
BmuI	ACTGGG	1 cut(s)	282
BpuEI	CTTGAG	1 cut(s)	198
Bsa29I	ATCGAT	2 cut(s)	164, 520
BsaJI	CCNNGG	1 cut(s)	539
BsaWI	WCCGGW	1 cut(s)	524
BsaXI	ACNNNNNCTCC	2 cut(s)	302, 332
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 41
Bse1I	ACTGG	2 cut(s)	124, 288
Bse3DI	GCAATG	1 cut(s)	448
BseAI	TCCGGA	1 cut(s)	524
BseBI	CCWGG	2 cut(s)	36, 541
BseCI	ATCGAT	2 cut(s)	164, 520
BseDI	CCNNGG	1 cut(s)	539
BseGI	GGATG	3 cut(s)	24, 120, 128
BseLI	CCNNNNNNNGG	2 cut(s)	35, 41
BseMI	GCAATG	1 cut(s)	448
BseMII	CTCAG	1 cut(s)	189
BseNI	ACTGG	2 cut(s)	124, 288
BseRI	GAGGAG	1 cut(s)	310
BseXI	GCAGC	3 cut(s)	48, 182, 343
BshFI	GGCC	2 cut(s)	45, 401
BshVI	ATCGAT	2 cut(s)	164, 520
BsiSI	CCGG	1 cut(s)	525
BslFI	GGGAC	2 cut(s)	188, 269
BslI	CCNNNNNNNGG	2 cut(s)	35, 41
BsmAI	GTCTC	1 cut(s)	322
BsmBI	CGTCTC	1 cut(s)	322
BsmFI	GGGAC	2 cut(s)	188, 269
BsnI	GGCC	2 cut(s)	45, 401
Bsp13I	TCCGGA	1 cut(s)	524
Bsp1407I	TGTACA	1 cut(s)	237
Bsp143I	GATC	5 cut(s)	85, 105, 217, 517, 521
BspACI	CCGC	1 cut(s)	227
BspANI	GGCC	2 cut(s)	45, 401
BspCNI	CTCAG	1 cut(s)	188
BspDI	ATCGAT	2 cut(s)	164, 520
BspEI	TCCGGA	1 cut(s)	524
BspHI	TCATGA	1 cut(s)	484
BspPI	GGATC	2 cut(s)	93, 516
BsrDI	GCAATG	1 cut(s)	448
BsrGI	TGTACA	1 cut(s)	237
BsrI	ACTGG	2 cut(s)	124, 288
BssECI	CCNNGG	1 cut(s)	539
BssMI	GATC	5 cut(s)	85, 105, 217, 517, 521
Bst2UI	CCWGG	2 cut(s)	36, 541
BstAUI	TGTACA	1 cut(s)	237
BstC8I	GCNNGC	1 cut(s)	43
BstDEI	CTNAG	2 cut(s)	146, 175
BstF5I	GGATG	3 cut(s)	24, 120, 128
BstKTI	GATC	5 cut(s)	88, 108, 220, 520, 524
BstMAI	GTCTC	1 cut(s)	322
BstMBI	GATC	5 cut(s)	85, 105, 217, 517, 521
BstMWI	GCNNNNNNNGC	1 cut(s)	362
BstNI	CCWGG	2 cut(s)	36, 541
BstSCI	CCNGG	2 cut(s)	34, 539
BstV1I	GCAGC	3 cut(s)	48, 182, 343
Bsu15I	ATCGAT	2 cut(s)	164, 520
BsuRI	GGCC	2 cut(s)	45, 401
BsuTUI	ATCGAT	2 cut(s)	164, 520
BtrI	CACGTC	1 cut(s)	283
BtsCI	GGATG	3 cut(s)	24, 120, 128
BtsIMutI	CAGTG	1 cut(s)	295
Cac8I	GCNNGC	1 cut(s)	43
CciI	TCATGA	1 cut(s)	484
ClaI	ATCGAT	2 cut(s)	164, 520
Csp6I	GTAC	2 cut(s)	53, 238
CviAII	CATG	3 cut(s)	388, 463, 485
CviJI	RGCY	4 cut(s)	45, 173, 401, 458
CviKI_1	RGCY	4 cut(s)	45, 173, 401, 458
CviQI	GTAC	2 cut(s)	53, 238
DdeI	CTNAG	2 cut(s)	146, 175
DpnI	GATC	5 cut(s)	87, 107, 219, 519, 523
DpnII	GATC	5 cut(s)	85, 105, 217, 517, 521
EaeI	YGGCCR	1 cut(s)	399
Eco32I	GATATC	1 cut(s)	452
EcoRII	CCWGG	2 cut(s)	34, 539
EcoRV	GATATC	1 cut(s)	452
Esp3I	CGTCTC	1 cut(s)	322
FaeI	CATG	3 cut(s)	391, 466, 488
FaiI	YATR	4 cut(s)	154, 389, 464, 486
FaqI	GGGAC	2 cut(s)	188, 269
FatI	CATG	3 cut(s)	387, 462, 484
Fnu4HI	GCNGC	3 cut(s)	62, 171, 357
FokI	GGATG	3 cut(s)	11, 107, 115
Fsp4HI	GCNGC	3 cut(s)	62, 171, 357
FspBI	CTAG	3 cut(s)	324, 455, 565
GluI	GCNGC	3 cut(s)	62, 171, 357
HaeIII	GGCC	2 cut(s)	45, 401
HapII	CCGG	1 cut(s)	525
Hin1II	CATG	3 cut(s)	391, 466, 488
HinfI	GANTC	5 cut(s)	186, 192, 277, 341, 346
HpaII	CCGG	1 cut(s)	525
HphI	GGTGA	4 cut(s)	24, 100, 237, 298
Hpy166II	GTNNAC	1 cut(s)	551
Hpy188I	TCNGA	4 cut(s)	178, 191, 340, 517
Hpy188III	TCNNGA	5 cut(s)	215, 295, 433, 485, 525
Hpy8I	GTNNAC	1 cut(s)	551
HpyAV	CCTTC	3 cut(s)	142, 429, 482
HpyCH4IV	ACGT	1 cut(s)	282
HpyCH4V	TGCA	3 cut(s)	64, 170, 446
HpyF10VI	GCNNNNNNNGC	1 cut(s)	362
HpyF3I	CTNAG	2 cut(s)	146, 175
HpySE526I	ACGT	1 cut(s)	282
Hsp92II	CATG	3 cut(s)	391, 466, 488
Kpn2I	TCCGGA	1 cut(s)	524
Kzo9I	GATC	5 cut(s)	85, 105, 217, 517, 521
LmnI	GCTCC	2 cut(s)	38, 471
Lsp1109I	GCAGC	3 cut(s)	48, 182, 343
MaeI	CTAG	3 cut(s)	324, 455, 565
MaeII	ACGT	1 cut(s)	282
MaeIII	GTNAC	2 cut(s)	243, 278
MalI	GATC	5 cut(s)	87, 107, 219, 519, 523
MboI	GATC	5 cut(s)	85, 105, 217, 517, 521
MboII	GAAGA	4 cut(s)	16, 250, 367, 473
MlsI	TGGCCA	1 cut(s)	401
MluCI	AATT	3 cut(s)	65, 99, 477
MluNI	TGGCCA	1 cut(s)	401
MlyI	GAGTC	2 cut(s)	286, 355
MnlI	CCTC	5 cut(s)	184, 222, 234, 323, 331
Mox20I	TGGCCA	1 cut(s)	401
MroI	TCCGGA	1 cut(s)	524
MscI	TGGCCA	1 cut(s)	401
MseI	TTAA	1 cut(s)	411
Msp20I	TGGCCA	1 cut(s)	401
MspI	CCGG	1 cut(s)	525
MspR9I	CCNGG	2 cut(s)	36, 541
MvaI	CCWGG	2 cut(s)	36, 541
MwoI	GCNNNNNNNGC	1 cut(s)	362
NdeII	GATC	5 cut(s)	85, 105, 217, 517, 521
NlaIII	CATG	3 cut(s)	391, 466, 488
NmuCI	GTSAC	2 cut(s)	243, 278
PagI	TCATGA	1 cut(s)	484
PfeI	GAWTC	3 cut(s)	186, 192, 341
PkrI	GCNGC	3 cut(s)	63, 172, 358
PleI	GAGTC	2 cut(s)	285, 354
PpsI	GAGTC	2 cut(s)	285, 354
Psp6I	CCWGG	2 cut(s)	34, 539
PspGI	CCWGG	2 cut(s)	34, 539
RsaI	GTAC	2 cut(s)	54, 239
RsaNI	GTAC	2 cut(s)	53, 238
SaqAI	TTAA	1 cut(s)	411
SatI	GCNGC	3 cut(s)	62, 171, 357
Sau3AI	GATC	5 cut(s)	85, 105, 217, 517, 521
SchI	GAGTC	2 cut(s)	286, 355
ScrFI	CCNGG	2 cut(s)	36, 541
SetI	ASST	8 cut(s)	51, 214, 226, 285, 315, 460, 474, 545
SmlI	CTYRAG	1 cut(s)	213
SmoI	CTYRAG	1 cut(s)	213
Sse9I	AATT	3 cut(s)	65, 99, 477
SsiI	CCGC	1 cut(s)	227
SspI	AATATT	1 cut(s)	415
SspMI	CTAG	3 cut(s)	324, 455, 565
StyD4I	CCNGG	2 cut(s)	34, 539
TaiI	ACGT	1 cut(s)	285
TaqI	TCGA	5 cut(s)	104, 164, 220, 344, 520
TasI	AATT	3 cut(s)	65, 99, 477
TatI	WGTACW	1 cut(s)	237
TfiI	GAWTC	3 cut(s)	186, 192, 341
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TscAI	CASTG	1 cut(s)	295
TseFI	GTSAC	2 cut(s)	243, 278
TseI	GCWGC	3 cut(s)	61, 170, 356
Tsp45I	GTSAC	2 cut(s)	243, 278
TspDTI	ATGAA	7 cut(s)	13, 17, 141, 184, 451, 473, 501
TspRI	CASTG	1 cut(s)	295
XapI	RAATTY	1 cut(s)	99
XcmI	CCANNNNNNNNNTGG	1 cut(s)	394
XspI	CTAG	3 cut(s)	324, 455, 565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.