Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003814.1

Orthogroup ID

OG0002597

Physical Location & Seq

Genomic Coordinates Forward (+)

16516 .. 16924

Gene Structure 409 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003814.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

atgagctggcttgatgatcagcctgaagaatctgttgtgttcttatgctttggtagcttggggagctttaatgaagcacaagtgaaggagatagctctagggcttgggcagagtgggcagaggttcttgtggtcttttcgtttgacaccacccacaggcagcaaaactttgactcctatcgactgctcgaaccttgaggaagtcttgccggatgggttcttggagaggactagaggaaagggactgatatgcggatttgccgtttccacgtttccgatcatatcgtatccggatacccgtacttgtttcggtgcttcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0008150 GO:0008152 GO:0008194 GO:0009414 GO:0009415 GO:0009628 GO:0009687 GO:0009819 GO:0009987 GO:0010029 GO:0010030 GO:0010035 GO:0010294 GO:0016740 GO:0016757 GO:0016758 GO:0019752 GO:0032787 GO:0035251 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048518 GO:0048580 GO:0048582 GO:0048878 GO:0050789 GO:0050793 GO:0050801 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0055081 GO:0055088 GO:0065007 GO:0065008 GO:0071704 GO:0080043 GO:0080044 GO:0080045 GO:1900140 GO:1901615 GO:1901700 GO:1902265 GO:1902644 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

106

Amino Acids

11.59

Weight (kDa)

4.61

Isoelectric Point (pI)

34.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07250 AT1G07260 AT2G29710 AT2G29730 AT2G29740 AT2G29750
fragaria_vesca	FvH4_3g38400
malus_domestica	MD11G1076200.v1.1 MD11G1076600.v1.1 MD11G1076800.v1.1
prunus_persica	Prupe.6G058900_v2.0.a1 Prupe.6G059000_v2.0.a1
pyrus_communis	pycom11g06400 pycom11g06420 pycom11g06440 pycom11g06460 pycom11g06470
rosa_chinensis	RchiOBHm_Chr5g0069021
rosa_laevigata	RLG00000020959 RLG00000022423 RLG00000036031
rosa_multiflora	Rmu_sc0000853.1_g000006 Rmu_sc0000853.1_g000007 Rmu_sc0000936.1_g000005 Rmu_sc0001913.1_g000022 Rmu_sc0003814.1_g000006 Rmu_sc0006282.1_g000037
rosa_roxburghii	Rroxscaffold_1G00004260 Rroxscaffold_1G00011700
rosa_rugosa	Rorug05G0395700 Rorug07G0215100
rosa_samantha	Rh1BG061100 Rh5BG471600 Rh5CG494000 Rh5DG484200 Rh6CG276400 Rh7BG348600
rosa_wichuraiana	Rw0G006100 Rw2G043210 Rw5G042260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	289
AciI	CCGC	1 cut(s)	252
AcuI	CTGAAG	1 cut(s)	45
AfaI	GTAC	1 cut(s)	301
AfiI	CCNNNNNNNGG	1 cut(s)	155
AluBI	AGCT	4 cut(s)	6, 57, 66, 95
AluI	AGCT	4 cut(s)	6, 57, 66, 95
Aor13HI	TCCGGA	1 cut(s)	289
ApeKI	GCWGC	1 cut(s)	159
BbvI	GCAGC	1 cut(s)	171
BccI	CCATC	1 cut(s)	206
BceAI	ACGGC	1 cut(s)	245
BciVI	GTATCC	2 cut(s)	286, 297
BclI	TGATCA	1 cut(s)	16
BfaI	CTAG	2 cut(s)	98, 231
BfuI	GTATCC	2 cut(s)	286, 297
BisI	GCNGC	1 cut(s)	160
BlsI	GCNGC	1 cut(s)	161
BpuEI	CTTGAG	1 cut(s)	215
BsaWI	WCCGGW	1 cut(s)	289
BsaXI	ACNNNNNCTCC	2 cut(s)	157, 187
Bsc4I	CCNNNNNNNGG	1 cut(s)	155
BseAI	TCCGGA	1 cut(s)	289
BseGI	GGATG	1 cut(s)	217
BseLI	CCNNNNNNNGG	1 cut(s)	155
BseXI	GCAGC	1 cut(s)	171
BsiSI	CCGG	2 cut(s)	209, 290
BslFI	GGGAC	1 cut(s)	255
BslI	CCNNNNNNNGG	1 cut(s)	155
BsmFI	GGGAC	1 cut(s)	255
Bsp13I	TCCGGA	1 cut(s)	289
Bsp143I	GATC	2 cut(s)	16, 276
BspACI	CCGC	1 cut(s)	252
BspEI	TCCGGA	1 cut(s)	289
BssMI	GATC	2 cut(s)	16, 276
BstC8I	GCNNGC	1 cut(s)	8
BstDEI	CTNAG	1 cut(s)	318
BstF5I	GGATG	1 cut(s)	217
BstKTI	GATC	2 cut(s)	19, 279
BstMBI	GATC	2 cut(s)	16, 276
BstMWI	GCNNNNNNNGC	3 cut(s)	54, 63, 115
BstV1I	GCAGC	1 cut(s)	171
BsuI	GTATCC	2 cut(s)	286, 297
BtsCI	GGATG	1 cut(s)	217
Cac8I	GCNNGC	1 cut(s)	8
Csp6I	GTAC	1 cut(s)	300
CviJI	RGCY	7 cut(s)	6, 10, 22, 57, 66, 95, 103
CviKI_1	RGCY	7 cut(s)	6, 10, 22, 57, 66, 95, 103
CviQI	GTAC	1 cut(s)	300
DdeI	CTNAG	1 cut(s)	318
DpnI	GATC	2 cut(s)	18, 278
DpnII	GATC	2 cut(s)	16, 276
Eco57I	CTGAAG	1 cut(s)	45
FaiI	YATR	3 cut(s)	46, 250, 281
FaqI	GGGAC	1 cut(s)	255
FbaI	TGATCA	1 cut(s)	16
Fnu4HI	GCNGC	1 cut(s)	160
FokI	GGATG	1 cut(s)	224
Fsp4HI	GCNGC	1 cut(s)	160
FspBI	CTAG	2 cut(s)	98, 231
GluI	GCNGC	1 cut(s)	160
HapII	CCGG	2 cut(s)	209, 290
HinfI	GANTC	2 cut(s)	29, 172
HpaII	CCGG	2 cut(s)	209, 290
Hpy188I	TCNGA	1 cut(s)	276
Hpy188III	TCNNGA	1 cut(s)	290
HpyAV	CCTTC	1 cut(s)	79
HpyCH4IV	ACGT	1 cut(s)	269
HpyF10VI	GCNNNNNNNGC	3 cut(s)	54, 63, 115
HpyF3I	CTNAG	1 cut(s)	318
HpySE526I	ACGT	1 cut(s)	269
Kpn2I	TCCGGA	1 cut(s)	289
Ksp22I	TGATCA	1 cut(s)	16
Kzo9I	GATC	2 cut(s)	16, 276
LmnI	GCTCC	1 cut(s)	63
LpnPI	CCDG	4 cut(s)	36, 141, 222, 303
Lsp1109I	GCAGC	1 cut(s)	171
MaeI	CTAG	2 cut(s)	98, 231
MaeII	ACGT	1 cut(s)	269
MalI	GATC	2 cut(s)	18, 278
MboI	GATC	2 cut(s)	16, 276
MboII	GAAGA	1 cut(s)	38
MlyI	GAGTC	1 cut(s)	166
MnlI	CCTC	4 cut(s)	114, 190, 219, 227
MroI	TCCGGA	1 cut(s)	289
MseI	TTAA	1 cut(s)	69
MspI	CCGG	2 cut(s)	209, 290
MwoI	GCNNNNNNNGC	3 cut(s)	54, 63, 115
NdeII	GATC	2 cut(s)	16, 276
PfeI	GAWTC	1 cut(s)	29
PkrI	GCNGC	1 cut(s)	161
PleI	GAGTC	1 cut(s)	166
PpsI	GAGTC	1 cut(s)	166
RsaI	GTAC	1 cut(s)	301
RsaNI	GTAC	1 cut(s)	300
SaqAI	TTAA	1 cut(s)	69
SatI	GCNGC	1 cut(s)	160
Sau3AI	GATC	2 cut(s)	16, 276
SchI	GAGTC	1 cut(s)	166
SetI	ASST	7 cut(s)	8, 59, 68, 97, 125, 195, 272
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
SsiI	CCGC	1 cut(s)	252
SspMI	CTAG	2 cut(s)	98, 231
TaiI	ACGT	1 cut(s)	272
TaqI	TCGA	2 cut(s)	180, 188
TfiI	GAWTC	1 cut(s)	29
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TseI	GCWGC	1 cut(s)	159
TspDTI	ATGAA	1 cut(s)	87
XspI	CTAG	2 cut(s)	98, 231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.