Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0002597

Physical Location & Seq

Genomic Coordinates Forward (+)

9055126 .. 9061778

Gene Structure 6653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG061100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGTTCATCCCAGCACCAGGGGCCGGCCACCTCGTAGCAGCCTTGCAATTCGGAAAGCGTCTGCTTCAGCGAGATGATCGAATTTCAATCACAGTTCTTGCCATCAAATCAGCAGCCCCTTCATCTTTAGGTTCATACACAGAATCCCTTATTGCTTCGGAATTCCGAATCCAACTCATTGATGTCCCTCAAGCAGAGCTGCCTCCATTAGAGTTTGCAAAGTCACCAGCTAAATTTTTCATTCTAAACATTGAGAACCATGTGCCTAATGTCAGGGAGGCCCTCACTAACTACGTTTCATCATCACATTCTAAGCCCGACTCGGTTCCAATTGTTGGAGTGGTTCTTGATTTCTTCTGTGTCTCCATGATTGATGTGGTCAATGAACTCAATCTCCCTTCTTATCTTTTCATGACGAGCAATGCAGGGTATCTTTCTCTCATGTTCCACTTTCCGGCGCAGGATAGCCGGACCGGTGCGCCACCTAAATGTCAGCACTTCGATCCTGATTGGTTAGTCCCAGGTATTGTCCCCTCAGTTCCTACTACAGTTTTGCCTGTGTCCATGACAGATGGTAGCTACTCTAGTTATCTTGGGATTGCTGCGAGATTTAGAGAGGCCAAAGGTATCATAGCAAATACTTGTGTTGAGTTAGAGGCACATGCTTTTAACTCGTTTTCAGAAGATCAAACTACGCCTCCGGTGTACCCAGTTGGGCCGGTGCTTGATCTCAACGATGGTCAGGCTCGGTCCAATTTAAACCAGGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0008150 GO:0008152 GO:0008194 GO:0009414 GO:0009415 GO:0009628 GO:0009687 GO:0009819 GO:0009987 GO:0010029 GO:0010030 GO:0010035 GO:0010294 GO:0016740 GO:0016757 GO:0016758 GO:0019752 GO:0032787 GO:0035251 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048518 GO:0048580 GO:0048582 GO:0048878 GO:0050789 GO:0050793 GO:0050801 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0055081 GO:0055088 GO:0065007 GO:0065008 GO:0071704 GO:0080043 GO:0080044 GO:0080045 GO:1900140 GO:1901615 GO:1901700 GO:1902265 GO:1902644 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

256

Amino Acids

27.78

Weight (kDa)

5.15

Isoelectric Point (pI)

42.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07250 AT1G07260 AT2G29710 AT2G29730 AT2G29740 AT2G29750
fragaria_vesca	FvH4_3g38400
malus_domestica	MD11G1076200.v1.1 MD11G1076600.v1.1 MD11G1076800.v1.1
prunus_persica	Prupe.6G058900_v2.0.a1 Prupe.6G059000_v2.0.a1
pyrus_communis	pycom11g06400 pycom11g06420 pycom11g06440 pycom11g06460 pycom11g06470
rosa_chinensis	RchiOBHm_Chr5g0069021
rosa_laevigata	RLG00000020959 RLG00000022423 RLG00000036031
rosa_multiflora	Rmu_sc0000853.1_g000006 Rmu_sc0000853.1_g000007 Rmu_sc0000936.1_g000005 Rmu_sc0001913.1_g000022 Rmu_sc0003814.1_g000006 Rmu_sc0006282.1_g000037
rosa_roxburghii	Rroxscaffold_1G00004260 Rroxscaffold_1G00011700
rosa_rugosa	Rorug05G0395700 Rorug07G0215100
rosa_samantha	Rh1BG061100 Rh5BG471600 Rh5CG494000 Rh5DG484200 Rh6CG276400 Rh7BG348600
rosa_wichuraiana	Rw0G006100 Rw2G043210 Rw5G042260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	335
AclWI	GGATC	1 cut(s)	497
AcoI	YGGCCR	1 cut(s)	25
AcsI	RAATTY	3 cut(s)	81, 161, 233
AcuI	CTGAAG	1 cut(s)	50
AfaI	GTAC	1 cut(s)	707
AfiI	CCNNNNNNNGG	4 cut(s)	17, 23, 335, 454
AgeI	ACCGGT	1 cut(s)	473
AgsI	TTSAA	1 cut(s)	87
AjnI	CCWGG	3 cut(s)	16, 520, 762
AloI	GAACNNNNNNTCC	2 cut(s)	378, 410
AluBI	AGCT	3 cut(s)	199, 230, 579
AluI	AGCT	3 cut(s)	199, 230, 579
Alw26I	GTCTC	1 cut(s)	367
AlwI	GGATC	1 cut(s)	497
AoxI	GGCC	5 cut(s)	21, 25, 279, 618, 716
ApeKI	GCWGC	4 cut(s)	38, 113, 199, 602
ApoI	RAATTY	3 cut(s)	81, 161, 233
AsiGI	ACCGGT	1 cut(s)	473
AspLEI	GCGC	2 cut(s)	460, 481
AspS9I	GGNCC	5 cut(s)	21, 280, 471, 716, 750
AsuHPI	GGTGA	1 cut(s)	216
AvaII	GGWCC	2 cut(s)	471, 750
BbvI	GCAGC	4 cut(s)	50, 125, 186, 589
BccI	CCATC	3 cut(s)	110, 566, 731
BciT130I	CCWGG	3 cut(s)	18, 522, 764
BcoDI	GTCTC	1 cut(s)	367
BfaI	CTAG	1 cut(s)	585
BfmI	CTRYAG	1 cut(s)	546
BisI	GCNGC	4 cut(s)	39, 114, 200, 603
BlsI	GCNGC	4 cut(s)	40, 115, 201, 604
Bme1390I	CCNGG	3 cut(s)	18, 522, 764
Bme18I	GGWCC	2 cut(s)	471, 750
BmgT120I	GGNCC	5 cut(s)	21, 280, 471, 716, 750
BmiI	GGNNCC	2 cut(s)	22, 327
BmrFI	CCNGG	3 cut(s)	18, 522, 764
BmrI	ACTGGG	1 cut(s)	704
BmuI	ACTGGG	1 cut(s)	704
BpuEI	CTTGAG	1 cut(s)	174
BsaJI	CCNNGG	2 cut(s)	17, 520
BsaWI	WCCGGW	2 cut(s)	473, 700
BsaXI	ACNNNNNCTCC	4 cut(s)	378, 408, 682, 712
Bsc4I	CCNNNNNNNGG	4 cut(s)	17, 23, 335, 454
Bse118I	RCCGGY	3 cut(s)	23, 473, 718
Bse1I	ACTGG	1 cut(s)	710
Bse3DI	GCAATG	1 cut(s)	427
BseBI	CCWGG	3 cut(s)	18, 522, 764
BseDI	CCNNGG	2 cut(s)	17, 520
BseGI	GGATG	1 cut(s)	6
BseLI	CCNNNNNNNGG	4 cut(s)	17, 23, 335, 454
BseMI	GCAATG	1 cut(s)	427
BseMII	CTCAG	1 cut(s)	549
BseNI	ACTGG	1 cut(s)	710
BseXI	GCAGC	4 cut(s)	50, 125, 186, 589
BseYI	CCCAGC	1 cut(s)	10
BshFI	GGCC	5 cut(s)	23, 27, 281, 620, 718
BshTI	ACCGGT	1 cut(s)	473
BsiSI	CCGG	6 cut(s)	24, 455, 469, 474, 701, 719
BslFI	GGGAC	3 cut(s)	170, 503, 515
BslI	CCNNNNNNNGG	4 cut(s)	17, 23, 335, 454
BsmAI	GTCTC	1 cut(s)	367
BsmFI	GGGAC	3 cut(s)	170, 503, 515
BsnI	GGCC	5 cut(s)	23, 27, 281, 620, 718
Bsp143I	GATC	4 cut(s)	76, 502, 685, 727
BspANI	GGCC	5 cut(s)	23, 27, 281, 620, 718
BspCNI	CTCAG	1 cut(s)	548
BspHI	TCATGA	1 cut(s)	411
BspLI	GGNNCC	2 cut(s)	22, 327
BspPI	GGATC	1 cut(s)	497
BsrDI	GCAATG	1 cut(s)	427
BsrFI	RCCGGY	3 cut(s)	23, 473, 718
BsrI	ACTGG	1 cut(s)	710
BssAI	RCCGGY	3 cut(s)	23, 473, 718
BssECI	CCNNGG	2 cut(s)	17, 520
BssMI	GATC	4 cut(s)	76, 502, 685, 727
Bst2UI	CCWGG	3 cut(s)	18, 522, 764
Bst4CI	ACNGT	2 cut(s)	94, 550
BstC8I	GCNNGC	1 cut(s)	25
BstDEI	CTNAG	2 cut(s)	312, 535
BstF5I	GGATG	1 cut(s)	6
BstHHI	GCGC	2 cut(s)	460, 481
BstKTI	GATC	4 cut(s)	79, 505, 688, 730
BstMAI	GTCTC	1 cut(s)	367
BstMBI	GATC	4 cut(s)	76, 502, 685, 727
BstMWI	GCNNNNNNNGC	1 cut(s)	20
BstNI	CCWGG	3 cut(s)	18, 522, 764
BstNSI	RCATGY	1 cut(s)	665
BstSCI	CCNGG	3 cut(s)	16, 520, 762
BstSFI	CTRYAG	1 cut(s)	546
BstV1I	GCAGC	4 cut(s)	50, 125, 186, 589
BsuRI	GGCC	5 cut(s)	23, 27, 281, 620, 718
BtsCI	GGATG	1 cut(s)	6
Cac8I	GCNNGC	1 cut(s)	25
CciI	TCATGA	1 cut(s)	411
CfoI	GCGC	2 cut(s)	460, 481
Cfr10I	RCCGGY	3 cut(s)	23, 473, 718
Cfr13I	GGNCC	5 cut(s)	21, 280, 471, 716, 750
CpoI	CGGWCCG	1 cut(s)	471
CseI	GACGC	1 cut(s)	47
Csp6I	GTAC	1 cut(s)	706
CspAI	ACCGGT	1 cut(s)	473
CspI	CGGWCCG	1 cut(s)	471
CviAII	CATG	6 cut(s)	260, 367, 412, 442, 565, 662
CviQI	GTAC	1 cut(s)	706
DdeI	CTNAG	2 cut(s)	312, 535
DpnI	GATC	4 cut(s)	78, 504, 687, 729
DpnII	GATC	4 cut(s)	76, 502, 685, 727
DraI	TTTAAA	1 cut(s)	759
EaeI	YGGCCR	1 cut(s)	25
Eco47I	GGWCC	2 cut(s)	471, 750
Eco57I	CTGAAG	1 cut(s)	50
EcoO109I	RGGNCCY	1 cut(s)	280
EcoRI	GAATTC	1 cut(s)	161
EcoRII	CCWGG	3 cut(s)	16, 520, 762
FaeI	CATG	6 cut(s)	263, 370, 415, 445, 568, 665
FaiI	YATR	8 cut(s)	136, 261, 368, 413, 443, 566, 632, 663
FaqI	GGGAC	3 cut(s)	170, 503, 515
FatI	CATG	6 cut(s)	259, 366, 411, 441, 564, 661
Fnu4HI	GCNGC	4 cut(s)	39, 114, 200, 603
FseI	GGCCGGCC	1 cut(s)	27
Fsp4HI	GCNGC	4 cut(s)	39, 114, 200, 603
FspBI	CTAG	1 cut(s)	585
GlaI	GCGC	2 cut(s)	459, 480
GluI	GCNGC	4 cut(s)	39, 114, 200, 603
GsaI	CCCAGC	1 cut(s)	14
HaeIII	GGCC	5 cut(s)	23, 27, 281, 620, 718
HapII	CCGG	6 cut(s)	24, 455, 469, 474, 701, 719
HgaI	GACGC	1 cut(s)	47
HhaI	GCGC	2 cut(s)	460, 481
Hin1II	CATG	6 cut(s)	263, 370, 415, 445, 568, 665
Hin6I	GCGC	2 cut(s)	458, 479
HinP1I	GCGC	2 cut(s)	458, 479
HinfI	GANTC	3 cut(s)	143, 168, 320
HpaII	CCGG	6 cut(s)	24, 455, 469, 474, 701, 719
HphI	GGTGA	1 cut(s)	216
Hpy166II	GTNNAC	1 cut(s)	706
Hpy188I	TCNGA	4 cut(s)	53, 160, 167, 682
Hpy188III	TCNNGA	3 cut(s)	347, 412, 506
Hpy8I	GTNNAC	1 cut(s)	706
HpyAV	CCTTC	2 cut(s)	129, 408
HpyCH4III	ACNGT	2 cut(s)	94, 550
HpyCH4IV	ACGT	1 cut(s)	294
HpyCH4V	TGCA	3 cut(s)	46, 218, 425
HpyF10VI	GCNNNNNNNGC	1 cut(s)	20
HpyF3I	CTNAG	2 cut(s)	312, 535
HpySE526I	ACGT	1 cut(s)	294
Hsp92II	CATG	6 cut(s)	263, 370, 415, 445, 568, 665
HspAI	GCGC	2 cut(s)	458, 479
KroI	GCCGGC	1 cut(s)	23
KroNI	GCCGGC	1 cut(s)	25
Kzo9I	GATC	4 cut(s)	76, 502, 685, 727
Lsp1109I	GCAGC	4 cut(s)	50, 125, 186, 589
MaeI	CTAG	1 cut(s)	585
MaeII	ACGT	1 cut(s)	294
MaeIII	GTNAC	1 cut(s)	222
MalI	GATC	4 cut(s)	78, 504, 687, 729
MboI	GATC	4 cut(s)	76, 502, 685, 727
MboII	GAAGA	2 cut(s)	346, 695
MfeI	CAATTG	1 cut(s)	330
MluCI	AATT	6 cut(s)	47, 81, 161, 233, 330, 754
MlyI	GAGTC	1 cut(s)	314
MmeI	TCCRAC	2 cut(s)	196, 316
MnlI	CCTC	9 cut(s)	41, 198, 213, 271, 293, 544, 610, 649, 708
MroNI	GCCGGC	1 cut(s)	23
MseI	TTAA	2 cut(s)	669, 758
MslI	CAYNNNNRTG	1 cut(s)	487
MspI	CCGG	6 cut(s)	24, 455, 469, 474, 701, 719
MspR9I	CCNGG	3 cut(s)	18, 522, 764
MunI	CAATTG	1 cut(s)	330
MvaI	CCWGG	3 cut(s)	18, 522, 764
MwoI	GCNNNNNNNGC	1 cut(s)	20
NaeI	GCCGGC	1 cut(s)	25
NdeII	GATC	4 cut(s)	76, 502, 685, 727
NgoMIV	GCCGGC	1 cut(s)	23
NlaIII	CATG	6 cut(s)	263, 370, 415, 445, 568, 665
NlaIV	GGNNCC	2 cut(s)	22, 327
NmuCI	GTSAC	1 cut(s)	222
NspI	RCATGY	1 cut(s)	665
PagI	TCATGA	1 cut(s)	411
PdiI	GCCGGC	1 cut(s)	25
PfeI	GAWTC	2 cut(s)	143, 168
PflMI	CCANNNNNTGG	1 cut(s)	335
PinAI	ACCGGT	1 cut(s)	473
PkrI	GCNGC	4 cut(s)	40, 115, 201, 604
PleI	GAGTC	1 cut(s)	314
PpsI	GAGTC	1 cut(s)	314
Psp6I	CCWGG	3 cut(s)	16, 520, 762
PspFI	CCCAGC	1 cut(s)	10
PspGI	CCWGG	3 cut(s)	16, 520, 762
PspN4I	GGNNCC	2 cut(s)	22, 327
PspPI	GGNCC	5 cut(s)	21, 280, 471, 716, 750
RigI	GGCCGGCC	1 cut(s)	27
RsaI	GTAC	1 cut(s)	707
RsaNI	GTAC	1 cut(s)	706
RseI	CAYNNNNRTG	1 cut(s)	487
Rsr2I	CGGWCCG	1 cut(s)	471
RsrII	CGGWCCG	1 cut(s)	471
SaqAI	TTAA	2 cut(s)	669, 758
SatI	GCNGC	4 cut(s)	39, 114, 200, 603
Sau3AI	GATC	4 cut(s)	76, 502, 685, 727
Sau96I	GGNCC	5 cut(s)	21, 280, 471, 716, 750
SchI	GAGTC	1 cut(s)	314
ScrFI	CCNGG	3 cut(s)	18, 522, 764
SetI	ASST	9 cut(s)	33, 133, 201, 232, 297, 487, 526, 581, 628
SfcI	CTRYAG	1 cut(s)	546
SinI	GGWCC	2 cut(s)	471, 750
SmiMI	CAYNNNNRTG	1 cut(s)	487
SmlI	CTYRAG	1 cut(s)	189
SmoI	CTYRAG	1 cut(s)	189
Sse9I	AATT	6 cut(s)	47, 81, 161, 233, 330, 754
SspMI	CTAG	1 cut(s)	585
StyD4I	CCNGG	3 cut(s)	16, 520, 762
TaaI	ACNGT	2 cut(s)	94, 550
TaiI	ACGT	1 cut(s)	297
TaqI	TCGA	2 cut(s)	79, 501
TaqII	GACCGA	1 cut(s)	738
TasI	AATT	6 cut(s)	47, 81, 161, 233, 330, 754
TfiI	GAWTC	2 cut(s)	143, 168
Tru1I	TTAA	2 cut(s)	669, 758
Tru9I	TTAA	2 cut(s)	669, 758
TseFI	GTSAC	1 cut(s)	222
TseI	GCWGC	4 cut(s)	38, 113, 199, 602
Tsp45I	GTSAC	1 cut(s)	222
TspDTI	ATGAA	6 cut(s)	111, 123, 229, 288, 399, 400
Van91I	CCANNNNNTGG	1 cut(s)	335
VpaK11BI	GGWCC	2 cut(s)	471, 750
XapI	RAATTY	3 cut(s)	81, 161, 233
XceI	RCATGY	1 cut(s)	665
XcmI	CCANNNNNNNNNTGG	1 cut(s)	373
XspI	CTAG	1 cut(s)	585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.