Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002597

Physical Location & Seq

Genomic Coordinates Forward (+)

19076355 .. 19077101

Gene Structure 747 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0215100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGCATGGGGAGTTCCATTCCAAAATTATGAGCCTTTCTTCTGCTCTCTCAAAATGGAATAGAGAGGTTTTTGGTAACCTGTTTCAGAAAAAAAGGAGAATTTTGGCCAGAATTGGGGGCATCCAAAAGGCCTGTGTCAAACATGAGAACCCTTTCTTAATTAAGCTTGAAGCTGAGCTCATTCATGATTATGAGAATATCCTAAACCAGGAGAATCTTTTTTGGAAGCAGAAATCTAGAGATAAGTGGCTTCAAGGAGGTGACAGGAATACCAAATTCTTTCATTTAACTACCCTGGTTAGAAGGAGGAAAAATAAAATTGAGGGCCTGTTTGACAGTAATGGAACTTGGTTTACTAATTCTGCCTCCATGAAAAATATTGTTGTTGATTTTTTCACCAATCTTTTCTCTTCTCAATGTGGTGAAGACACTAGATTCATTATTCCCTGGCTCTTCCCTAATATTGATCAGGAGAATCTCACTAACATTGGTAAACCTATGTCCCTCATTGAAGTTAAAGACTCCCTCTTTGCCATTGGAGGACTCAAAGCTCCTGGATTTGATGATTTCCCTGCTATTTTCTTTCAACATCATTGGCAGCTTTATTCTTGTGAAATCTTTAATGTGGTGTCTAATGCTTTCAAGTCTGGTGTAATTCCTCCTGGTCAAAATCACACTATTATCTCCCTAATTCCCAAGGTGGATGGCCCTCAACACATGGCTAATTTCAGGCCAATCAGTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0008150 GO:0008152 GO:0008194 GO:0009414 GO:0009415 GO:0009628 GO:0009687 GO:0009819 GO:0009987 GO:0010029 GO:0010030 GO:0010035 GO:0010294 GO:0016740 GO:0016757 GO:0016758 GO:0019752 GO:0032787 GO:0035251 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048518 GO:0048580 GO:0048582 GO:0048878 GO:0050789 GO:0050793 GO:0050801 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0055081 GO:0055088 GO:0065007 GO:0065008 GO:0071704 GO:0080043 GO:0080044 GO:0080045 GO:1900140 GO:1901615 GO:1901700 GO:1902265 GO:1902644 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

248

Amino Acids

28.58

Weight (kDa)

9.36

Isoelectric Point (pI)

46.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07250 AT1G07260 AT2G29710 AT2G29730 AT2G29740 AT2G29750
fragaria_vesca	FvH4_3g38400
malus_domestica	MD11G1076200.v1.1 MD11G1076600.v1.1 MD11G1076800.v1.1
prunus_persica	Prupe.6G058900_v2.0.a1 Prupe.6G059000_v2.0.a1
pyrus_communis	pycom11g06400 pycom11g06420 pycom11g06440 pycom11g06460 pycom11g06470
rosa_chinensis	RchiOBHm_Chr5g0069021
rosa_laevigata	RLG00000020959 RLG00000022423 RLG00000036031
rosa_multiflora	Rmu_sc0000853.1_g000006 Rmu_sc0000853.1_g000007 Rmu_sc0000936.1_g000005 Rmu_sc0001913.1_g000022 Rmu_sc0003814.1_g000006 Rmu_sc0006282.1_g000037
rosa_roxburghii	Rroxscaffold_1G00004260 Rroxscaffold_1G00011700
rosa_rugosa	Rorug05G0395700 Rorug07G0215100
rosa_samantha	Rh1BG061100 Rh5BG471600 Rh5CG494000 Rh5DG484200 Rh6CG276400 Rh7BG348600
rosa_wichuraiana	Rw0G006100 Rw2G043210 Rw5G042260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	105
AcsI	RAATTY	2 cut(s)	99, 275
AfiI	CCNNNNNNNGG	2 cut(s)	114, 208
AgsI	TTSAA	5 cut(s)	170, 254, 512, 587, 643
AjnI	CCWGG	5 cut(s)	207, 294, 446, 553, 661
AluBI	AGCT	5 cut(s)	166, 173, 178, 551, 601
AluI	AGCT	5 cut(s)	166, 173, 178, 551, 601
Alw21I	GWGCWC	1 cut(s)	180
AoxI	GGCC	5 cut(s)	105, 129, 325, 706, 731
ApeKI	GCWGC	1 cut(s)	598
ApoI	RAATTY	2 cut(s)	99, 275
ArsI	GACNNNNNNTTYG	2 cut(s)	512, 544
Asp700I	GAANNNNTTC	1 cut(s)	152
AspS9I	GGNCC	2 cut(s)	325, 707
AsuHPI	GGTGA	3 cut(s)	272, 388, 434
BalI	TGGCCA	1 cut(s)	107
BanII	GRGCYC	1 cut(s)	180
BbsI	GAAGAC	1 cut(s)	432
Bbv12I	GWGCWC	1 cut(s)	180
BbvI	GCAGC	1 cut(s)	610
BccI	CCATC	1 cut(s)	698
BciT130I	CCWGG	5 cut(s)	209, 296, 448, 555, 663
BclI	TGATCA	1 cut(s)	466
BfaI	CTAG	2 cut(s)	237, 432
BisI	GCNGC	1 cut(s)	599
BlpI	GCTNAGC	1 cut(s)	174
BlsI	GCNGC	1 cut(s)	600
Bme1390I	CCNGG	5 cut(s)	209, 296, 448, 555, 663
BmgT120I	GGNCC	2 cut(s)	325, 707
BmrFI	CCNGG	5 cut(s)	209, 296, 448, 555, 663
BmsI	GCATC	1 cut(s)	129
BpiI	GAAGAC	1 cut(s)	432
Bpu1102I	GCTNAGC	1 cut(s)	174
BsaJI	CCNNGG	3 cut(s)	294, 446, 696
Bsc4I	CCNNNNNNNGG	2 cut(s)	114, 208
BseBI	CCWGG	5 cut(s)	209, 296, 448, 555, 663
BseDI	CCNNGG	3 cut(s)	294, 446, 696
BseGI	GGATG	2 cut(s)	120, 709
BseLI	CCNNNNNNNGG	2 cut(s)	114, 208
BseMII	CTCAG	1 cut(s)	165
BseXI	GCAGC	1 cut(s)	610
BshFI	GGCC	5 cut(s)	107, 131, 327, 708, 733
BsiHKAI	GWGCWC	1 cut(s)	180
BslFI	GGGAC	1 cut(s)	487
BslI	CCNNNNNNNGG	2 cut(s)	114, 208
BsmFI	GGGAC	1 cut(s)	487
BsnI	GGCC	5 cut(s)	107, 131, 327, 708, 733
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp143I	GATC	1 cut(s)	466
Bsp1720I	GCTNAGC	1 cut(s)	174
BspANI	GGCC	5 cut(s)	107, 131, 327, 708, 733
BspCNI	CTCAG	1 cut(s)	166
BspHI	TCATGA	1 cut(s)	184
BspQI	GCTCTTC	1 cut(s)	458
BssECI	CCNNGG	3 cut(s)	294, 446, 696
BssMI	GATC	1 cut(s)	466
BssT1I	CCWWGG	1 cut(s)	696
Bst2UI	CCWGG	5 cut(s)	209, 296, 448, 555, 663
Bst4CI	ACNGT	1 cut(s)	338
Bst6I	CTCTTC	2 cut(s)	415, 458
BstDEI	CTNAG	1 cut(s)	174
BstEII	GGTNACC	1 cut(s)	74
BstENI	CCTNNNNNAGG	1 cut(s)	206
BstF5I	GGATG	2 cut(s)	120, 709
BstKTI	GATC	1 cut(s)	469
BstMBI	GATC	1 cut(s)	466
BstNI	CCWGG	5 cut(s)	209, 296, 448, 555, 663
BstPI	GGTNACC	1 cut(s)	74
BstSCI	CCNGG	5 cut(s)	207, 294, 446, 553, 661
BstV1I	GCAGC	1 cut(s)	610
BstV2I	GAAGAC	1 cut(s)	432
BsuRI	GGCC	5 cut(s)	107, 131, 327, 708, 733
BtsCI	GGATG	2 cut(s)	120, 709
CciI	TCATGA	1 cut(s)	184
Cfr13I	GGNCC	2 cut(s)	325, 707
CviAII	CATG	5 cut(s)	5, 143, 185, 370, 718
DdeI	CTNAG	1 cut(s)	174
DpnI	GATC	1 cut(s)	468
DpnII	GATC	1 cut(s)	466
EaeI	YGGCCR	1 cut(s)	105
Eam1104I	CTCTTC	2 cut(s)	415, 458
EarI	CTCTTC	2 cut(s)	415, 458
Ecl136II	GAGCTC	1 cut(s)	178
Eco130I	CCWWGG	1 cut(s)	696
Eco147I	AGGCCT	1 cut(s)	131
Eco24I	GRGCYC	1 cut(s)	180
Eco53kI	GAGCTC	1 cut(s)	178
Eco91I	GGTNACC	1 cut(s)	74
EcoICRI	GAGCTC	1 cut(s)	178
EcoNI	CCTNNNNNAGG	1 cut(s)	206
EcoO109I	RGGNCCY	1 cut(s)	325
EcoO65I	GGTNACC	1 cut(s)	74
EcoRII	CCWGG	5 cut(s)	207, 294, 446, 553, 661
EcoT14I	CCWWGG	1 cut(s)	696
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	180
ErhI	CCWWGG	1 cut(s)	696
FaeI	CATG	5 cut(s)	8, 146, 188, 373, 721
FaiI	YATR	9 cut(s)	6, 29, 144, 186, 192, 371, 500, 719, 745
FaqI	GGGAC	1 cut(s)	487
FatI	CATG	5 cut(s)	4, 142, 184, 369, 717
FbaI	TGATCA	1 cut(s)	466
Fnu4HI	GCNGC	1 cut(s)	599
FokI	GGATG	2 cut(s)	107, 716
FriOI	GRGCYC	1 cut(s)	180
Fsp4HI	GCNGC	1 cut(s)	599
FspBI	CTAG	2 cut(s)	237, 432
GluI	GCNGC	1 cut(s)	599
HaeIII	GGCC	5 cut(s)	107, 131, 327, 708, 733
Hin1II	CATG	5 cut(s)	8, 146, 188, 373, 721
HindIII	AAGCTT	1 cut(s)	164
HinfI	GANTC	5 cut(s)	214, 435, 475, 521, 543
HphI	GGTGA	3 cut(s)	272, 388, 434
Hpy166II	GTNNAC	2 cut(s)	354, 494
Hpy188I	TCNGA	1 cut(s)	87
Hpy188III	TCNNGA	3 cut(s)	185, 237, 470
Hpy8I	GTNNAC	2 cut(s)	354, 494
HpyAV	CCTTC	1 cut(s)	297
HpyCH4III	ACNGT	1 cut(s)	338
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	1 cut(s)	174
Hsp92II	CATG	5 cut(s)	8, 146, 188, 373, 721
Ksp22I	TGATCA	1 cut(s)	466
Kzo9I	GATC	1 cut(s)	466
LguI	GCTCTTC	1 cut(s)	458
LmnI	GCTCC	1 cut(s)	556
Lsp1109I	GCAGC	1 cut(s)	610
LweI	GCATC	1 cut(s)	129
MaeI	CTAG	2 cut(s)	237, 432
MaeIII	GTNAC	2 cut(s)	74, 260
MalI	GATC	1 cut(s)	468
MboI	GATC	1 cut(s)	466
MboII	GAAGA	4 cut(s)	30, 402, 437, 445
MhlI	GDGCHC	1 cut(s)	180
MlsI	TGGCCA	1 cut(s)	107
MluNI	TGGCCA	1 cut(s)	107
MlyI	GAGTC	2 cut(s)	515, 537
Mox20I	TGGCCA	1 cut(s)	107
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	152
MscI	TGGCCA	1 cut(s)	107
MseI	TTAA	5 cut(s)	158, 162, 287, 516, 621
MslI	CAYNNNNRTG	1 cut(s)	189
Msp20I	TGGCCA	1 cut(s)	107
MspR9I	CCNGG	5 cut(s)	209, 296, 448, 555, 663
MvaI	CCWGG	5 cut(s)	209, 296, 448, 555, 663
NdeII	GATC	1 cut(s)	466
NlaIII	CATG	5 cut(s)	8, 146, 188, 373, 721
NmuCI	GTSAC	1 cut(s)	260
NsiI	ATGCAT	1 cut(s)	6
PacI	TTAATTAA	1 cut(s)	162
PagI	TCATGA	1 cut(s)	184
PceI	AGGCCT	1 cut(s)	131
PciSI	GCTCTTC	1 cut(s)	458
PdmI	GAANNNNTTC	1 cut(s)	152
PfeI	GAWTC	3 cut(s)	214, 435, 475
PfoI	TCCNGGA	1 cut(s)	553
PkrI	GCNGC	1 cut(s)	600
PleI	GAGTC	2 cut(s)	515, 537
PpsI	GAGTC	2 cut(s)	515, 537
Psp124BI	GAGCTC	1 cut(s)	180
Psp6I	CCWGG	5 cut(s)	207, 294, 446, 553, 661
PspEI	GGTNACC	1 cut(s)	74
PspGI	CCWGG	5 cut(s)	207, 294, 446, 553, 661
PspPI	GGNCC	2 cut(s)	325, 707
PsrI	GAACNNNNNNTAC	2 cut(s)	337, 369
RseI	CAYNNNNRTG	1 cut(s)	189
SacI	GAGCTC	1 cut(s)	180
SapI	GCTCTTC	1 cut(s)	458
SaqAI	TTAA	5 cut(s)	158, 162, 287, 516, 621
SatI	GCNGC	1 cut(s)	599
Sau3AI	GATC	1 cut(s)	466
Sau96I	GGNCC	2 cut(s)	325, 707
SchI	GAGTC	2 cut(s)	515, 537
ScrFI	CCNGG	5 cut(s)	209, 296, 448, 555, 663
SduI	GDGCHC	1 cut(s)	180
SfaNI	GCATC	1 cut(s)	129
SmiMI	CAYNNNNRTG	1 cut(s)	189
SseBI	AGGCCT	1 cut(s)	131
SspI	AATATT	2 cut(s)	379, 463
SspMI	CTAG	2 cut(s)	237, 432
SstI	GAGCTC	1 cut(s)	180
StuI	AGGCCT	1 cut(s)	131
StyD4I	CCNGG	5 cut(s)	207, 294, 446, 553, 661
StyI	CCWWGG	1 cut(s)	696
TaaI	ACNGT	1 cut(s)	338
TfiI	GAWTC	3 cut(s)	214, 435, 475
Tru1I	TTAA	5 cut(s)	158, 162, 287, 516, 621
Tru9I	TTAA	5 cut(s)	158, 162, 287, 516, 621
TseFI	GTSAC	1 cut(s)	260
TseI	GCWGC	1 cut(s)	598
Tsp45I	GTSAC	1 cut(s)	260
TspDTI	ATGAA	4 cut(s)	173, 272, 386, 427
XagI	CCTNNNNNAGG	1 cut(s)	206
XapI	RAATTY	2 cut(s)	99, 275
XbaI	TCTAGA	1 cut(s)	236
XmnI	GAANNNNTTC	1 cut(s)	152
XspI	CTAG	2 cut(s)	237, 432
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.