Rw0G006100

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00235
Physical Location & Seq
Reverse (-)
151937 .. 153400
1464 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G006100.1

Sequence Viewer

Length: 1323 bp
ATGAAGAGAGCAGAACTAGTGTTCATCCCAGCACCAGGGGCCGGTCACCTCGTAGCAGCCTTGCAATTCGGAAAGCGTCTGCTTCAGCGAGATGATCGAATTTCAATCACAGTTCTTTCCATCAAATCAGCAGCCCCTTCACCTTTAGGTTCATACACAGAATCCCTTGTTGCTTCGGAATCCCGAATCCAACTCATTGATGTCCCTCAAGCAGAGCTGCCTCCATTAGAGTTTGCAAAGTCACCAGCTAAATTTTTCATTCTAAACATTGAGAACCATGTGCCTAATGTCAGGGAAGCCCTCACTAACTACGTTTCATCATTGCATTCTAAGCCCGACTCGGTTCCAATTGTTGGAGTGGTTCTTGATTTCTTCTGTGTCTCCATGATTGATGTGGTCAATGAACTCAATCTCCCTTCTTATCTTTTCATGACGAGCAATGCAGGGTATCTTTCTGTCATGTTCCACTTTCCGGCGCAGGATAGCCGGACCGGTATTGTCCCCCCAGTTCCTACTACAGTTTTGCCTGTGTCTATGACAGATGGTAGCTACTCTAGTTATCTTGGGATTGCTGCGAGATTTAGAGAGGCCAAAGGTATCATAGCAAATACTTGTGTTGAGTTAGAGGCACATGCTTTTAACTCGTTTTCAGAAGATCAAACTACGCCTCCGGTGTACCCAGTTGGGCCGGTGCTTGATCTCAACGATGGTCAGGCTCGGTCCAATTTAAACCAGGCGCAGCGTGACAGGATCATGAGCTGGCTTGATGATCAGCCTGAAGAATCTGTTGTGTTCTTATGCTTTGGAAGCTTGGGGAGCTTTAATGAAGCACAAGTGAAGGAGATAGCTCTGGGGCTTGAGCAGAGTGGGCAGAGGTTCTTGTGGTCTTTGCGTTTGACACCACCAAAAGGCAGCAAAACTTTGACTCCTATCGACTGCTCGAACCTTGAGGAAGTCTTGCCGGATGGGTTCTTGGAGAGGACTAGAGGAAAGGGACTGATATGCGGGTGGGCGCCGCAGGTGGAAGTCTTGTCCCACAAGGCAACCGGAGGCTTTGTGTCGCATTGTGGGTGGAACTCGATCTTGGAGAGCTTGTGGTACGGTGTGCCTATTGTGACATGGCCTATGTATGCCGAGCAACAGCTGAATGCGTTTCGAATGGTGAAGGAGTTGGGGTTGGGATTGGAGATGAGGTTGGATTACAAGAAAGGTGGTGAGGTTGTGAAGGCAGATGAGATAGGGAAGGCAAGGAGGGGGTCTTCCTCCGTTTCTCTTGGACGGTTTATTGAAGATGTGATGAGGAATCATTTTGGTTCTGATTAA

Protein Analysis

440

Amino Acids

48.34

Weight (kDa)

5.51

Isoelectric Point (pI)

43.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 255 - 390 1.2e-23 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1009
Acc36I ACCTGC 1 cut(s) 1009
AccB1I GGYRCC 1 cut(s) 1012
AccB7I CCANNNNNTGG 1 cut(s) 353
AciI CCGC 2 cut(s) 1005, 1016
AclWI GGATC 1 cut(s) 758
AcsI RAATTY 2 cut(s) 99, 251
AcuI CTGAAG 2 cut(s) 68, 798
AcyI GRCGYC 1 cut(s) 1013
AfaI GTAC 2 cut(s) 677, 1100
AfiI CCNNNNNNNGG 5 cut(s) 35, 41, 353, 472, 908
AgeI ACCGGT 1 cut(s) 491
AgsI TTSAA 2 cut(s) 105, 1289
AhlI ACTAGT 1 cut(s) 16
AjnI CCWGG 2 cut(s) 34, 732
AjuI GAANNNNNNNTTGG 2 cut(s) 1067, 1099
AloI GAACNNNNNNTCC 2 cut(s) 396, 428
AluBI AGCT 9 cut(s) 217, 248, 549, 759, 810, 819, 848, 1092, 1144
AluI AGCT 9 cut(s) 217, 248, 549, 759, 810, 819, 848, 1092, 1144
Alw26I GTCTC 1 cut(s) 385
AlwI GGATC 1 cut(s) 758
AoxI GGCC 4 cut(s) 39, 588, 686, 1121
ApeKI GCWGC 6 cut(s) 56, 131, 217, 572, 739, 912
ApoI RAATTY 2 cut(s) 99, 251
AsiGI ACCGGT 1 cut(s) 491
AspLEI GCGC 3 cut(s) 478, 739, 1015
AspS9I GGNCC 4 cut(s) 39, 489, 686, 720
AsuHPI GGTGA 5 cut(s) 38, 132, 234, 1174, 1226
AsuII TTCGAA 1 cut(s) 1156
AvaII GGWCC 2 cut(s) 489, 720
BanI GGYRCC 1 cut(s) 1012
BbsI GAAGAC 1 cut(s) 1251
BbvI GCAGC 6 cut(s) 68, 143, 204, 559, 751, 924
BccI CCATC 4 cut(s) 128, 536, 701, 959
BciT130I CCWGG 2 cut(s) 36, 734
BclI TGATCA 1 cut(s) 769
BcoDI GTCTC 1 cut(s) 385
BcuI ACTAGT 1 cut(s) 16
BfaI CTAG 3 cut(s) 17, 555, 984
BfmI CTRYAG 1 cut(s) 516
BfoI RGCGCY 1 cut(s) 1016
BfuAI ACCTGC 1 cut(s) 1009
BisI GCNGC 7 cut(s) 57, 132, 218, 573, 740, 913, 1016
BlsI GCNGC 7 cut(s) 58, 133, 219, 574, 741, 914, 1017
Bme1390I CCNGG 2 cut(s) 36, 734
Bme18I GGWCC 2 cut(s) 489, 720
BmgT120I GGNCC 4 cut(s) 39, 489, 686, 720
BmiI GGNNCC 3 cut(s) 40, 345, 1014
BmrFI CCNGG 2 cut(s) 36, 734
BmrI ACTGGG 2 cut(s) 500, 674
BmuI ACTGGG 2 cut(s) 500, 674
BpiI GAAGAC 1 cut(s) 1251
Bpu14I TTCGAA 1 cut(s) 1156
BpuEI CTTGAG 3 cut(s) 192, 878, 968
BsaHI GRCGYC 1 cut(s) 1013
BsaJI CCNNGG 1 cut(s) 35
BsaWI WCCGGW 3 cut(s) 491, 670, 1046
Bsc4I CCNNNNNNNGG 5 cut(s) 35, 41, 353, 472, 908
Bse118I RCCGGY 3 cut(s) 41, 491, 688
Bse1I ACTGG 2 cut(s) 506, 680
Bse3DI GCAATG 2 cut(s) 320, 445
BseBI CCWGG 2 cut(s) 36, 734
BseDI CCNNGG 1 cut(s) 35
BseGI GGATG 2 cut(s) 24, 970
BseLI CCNNNNNNNGG 5 cut(s) 35, 41, 353, 472, 908
BseMI GCAATG 2 cut(s) 320, 445
BseNI ACTGG 2 cut(s) 506, 680
BseXI GCAGC 6 cut(s) 68, 143, 204, 559, 751, 924
BseYI CCCAGC 1 cut(s) 28
BshFI GGCC 4 cut(s) 41, 590, 688, 1123
BshNI GGYRCC 1 cut(s) 1012
BshTI ACCGGT 1 cut(s) 491
BsiSI CCGG 8 cut(s) 42, 473, 487, 492, 671, 689, 962, 1047
BslFI GGGAC 4 cut(s) 188, 485, 1008, 1018
BslI CCNNNNNNNGG 5 cut(s) 35, 41, 353, 472, 908
BsmAI GTCTC 1 cut(s) 385
BsmFI GGGAC 4 cut(s) 188, 485, 1008, 1018
BsmI GAATGC 2 cut(s) 325, 1153
BsnI GGCC 4 cut(s) 41, 590, 688, 1123
Bsp119I TTCGAA 1 cut(s) 1156
Bsp143I GATC 6 cut(s) 94, 655, 697, 750, 769, 1080
BspACI CCGC 2 cut(s) 1005, 1016
BspANI GGCC 4 cut(s) 41, 590, 688, 1123
BspHI TCATGA 2 cut(s) 429, 753
BspLI GGNNCC 3 cut(s) 40, 345, 1014
BspMI ACCTGC 1 cut(s) 1009
BspPI GGATC 1 cut(s) 758
BspT104I TTCGAA 1 cut(s) 1156
BspT107I GGYRCC 1 cut(s) 1012
BsrDI GCAATG 2 cut(s) 320, 445
BsrFI RCCGGY 3 cut(s) 41, 491, 688
BsrI ACTGG 2 cut(s) 506, 680
BssAI RCCGGY 3 cut(s) 41, 491, 688
BssECI CCNNGG 1 cut(s) 35
BssMI GATC 6 cut(s) 94, 655, 697, 750, 769, 1080
BssNI GRCGYC 1 cut(s) 1013
Bst2UI CCWGG 2 cut(s) 36, 734
Bst4CI ACNGT 4 cut(s) 112, 520, 1103, 1281
BstACI GRCGYC 1 cut(s) 1013
BstBI TTCGAA 1 cut(s) 1156
BstC8I GCNNGC 1 cut(s) 761
BstDEI CTNAG 1 cut(s) 330
BstEII GGTNACC 1 cut(s) 44
BstF5I GGATG 2 cut(s) 24, 970
BstH2I RGCGCY 1 cut(s) 1016
BstHHI GCGC 3 cut(s) 478, 739, 1015
BstKTI GATC 6 cut(s) 97, 658, 700, 753, 772, 1083
BstMAI GTCTC 1 cut(s) 385
BstMBI GATC 6 cut(s) 94, 655, 697, 750, 769, 1080
BstMWI GCNNNNNNNGC 5 cut(s) 38, 331, 807, 816, 868
BstNI CCWGG 2 cut(s) 36, 734
BstNSI RCATGY 1 cut(s) 635
BstPI GGTNACC 1 cut(s) 44
BstSCI CCNGG 2 cut(s) 34, 732
BstSFI CTRYAG 1 cut(s) 516
BstV1I GCAGC 6 cut(s) 68, 143, 204, 559, 751, 924
BstV2I GAAGAC 1 cut(s) 1251
BsuRI GGCC 4 cut(s) 41, 590, 688, 1123
BtsCI GGATG 2 cut(s) 24, 970
BveI ACCTGC 1 cut(s) 1009
Cac8I GCNNGC 1 cut(s) 761
CciI TCATGA 2 cut(s) 429, 753
CfoI GCGC 3 cut(s) 478, 739, 1015
Cfr10I RCCGGY 3 cut(s) 41, 491, 688
Cfr13I GGNCC 4 cut(s) 39, 489, 686, 720
CpoI CGGWCCG 1 cut(s) 489
CseI GACGC 1 cut(s) 65
Csp6I GTAC 2 cut(s) 676, 1099
CspAI ACCGGT 1 cut(s) 491
CspCI CAANNNNNGTGG 2 cut(s) 1192, 1227
CspI CGGWCCG 1 cut(s) 489
CviAII CATG 7 cut(s) 278, 385, 430, 460, 632, 754, 1119
CviQI GTAC 2 cut(s) 676, 1099
DdeI CTNAG 1 cut(s) 330
DinI GGCGCC 1 cut(s) 1014
DpnI GATC 6 cut(s) 96, 657, 699, 752, 771, 1082
DpnII GATC 6 cut(s) 94, 655, 697, 750, 769, 1080
DraI TTTAAA 1 cut(s) 729
Eco47I GGWCC 2 cut(s) 489, 720
Eco57I CTGAAG 2 cut(s) 68, 798
Eco91I GGTNACC 1 cut(s) 44
EcoO65I GGTNACC 1 cut(s) 44
EcoRII CCWGG 2 cut(s) 34, 732
EgeI GGCGCC 1 cut(s) 1014
EheI GGCGCC 1 cut(s) 1014
FaeI CATG 7 cut(s) 281, 388, 433, 463, 635, 757, 1122
FaqI GGGAC 4 cut(s) 188, 485, 1008, 1018
FatI CATG 7 cut(s) 277, 384, 429, 459, 631, 753, 1118
FauI CCCGC 1 cut(s) 998
FbaI TGATCA 1 cut(s) 769
Fnu4HI GCNGC 7 cut(s) 57, 132, 218, 573, 740, 913, 1016
FokI GGATG 2 cut(s) 11, 977
Fsp4HI GCNGC 7 cut(s) 57, 132, 218, 573, 740, 913, 1016
FspBI CTAG 3 cut(s) 17, 555, 984
GlaI GCGC 3 cut(s) 477, 738, 1014
GluI GCNGC 7 cut(s) 57, 132, 218, 573, 740, 913, 1016
GsaI CCCAGC 1 cut(s) 32
HaeII RGCGCY 1 cut(s) 1016
HaeIII GGCC 4 cut(s) 41, 590, 688, 1123
HapII CCGG 8 cut(s) 42, 473, 487, 492, 671, 689, 962, 1047
HgaI GACGC 1 cut(s) 65
HhaI GCGC 3 cut(s) 478, 739, 1015
Hin1I GRCGYC 1 cut(s) 1013
Hin1II CATG 7 cut(s) 281, 388, 433, 463, 635, 757, 1122
Hin6I GCGC 3 cut(s) 476, 737, 1013
HinP1I GCGC 3 cut(s) 476, 737, 1013
HindIII AAGCTT 1 cut(s) 808
HinfI GANTC 7 cut(s) 161, 179, 186, 338, 782, 925, 1303
HpaII CCGG 8 cut(s) 42, 473, 487, 492, 671, 689, 962, 1047
HphI GGTGA 5 cut(s) 38, 132, 234, 1174, 1226
Hpy166II GTNNAC 1 cut(s) 676
Hpy188I TCNGA 4 cut(s) 71, 178, 652, 1318
Hpy188III TCNNGA 4 cut(s) 183, 365, 430, 754
Hpy8I GTNNAC 1 cut(s) 676
HpyAV CCTTC 6 cut(s) 147, 426, 832, 1159, 1219, 1237
HpyCH4III ACNGT 4 cut(s) 112, 520, 1103, 1281
HpyCH4IV ACGT 1 cut(s) 312
HpyCH4V TGCA 4 cut(s) 64, 236, 325, 443
HpyF10VI GCNNNNNNNGC 5 cut(s) 38, 331, 807, 816, 868
HpyF3I CTNAG 1 cut(s) 330
HpySE526I ACGT 1 cut(s) 312
Hsp92I GRCGYC 1 cut(s) 1013
Hsp92II CATG 7 cut(s) 281, 388, 433, 463, 635, 757, 1122
HspAI GCGC 3 cut(s) 476, 737, 1013
KasI GGCGCC 1 cut(s) 1012
Ksp22I TGATCA 1 cut(s) 769
Kzo9I GATC 6 cut(s) 94, 655, 697, 750, 769, 1080
LmnI GCTCC 1 cut(s) 816
Lsp1109I GCAGC 6 cut(s) 68, 143, 204, 559, 751, 924
MaeI CTAG 3 cut(s) 17, 555, 984
MaeII ACGT 1 cut(s) 312
MaeIII GTNAC 4 cut(s) 44, 240, 743, 1114
MalI GATC 6 cut(s) 96, 657, 699, 752, 771, 1082
MboI GATC 6 cut(s) 94, 655, 697, 750, 769, 1080
MboII GAAGA 6 cut(s) 16, 364, 665, 791, 1251, 1301
MfeI CAATTG 1 cut(s) 348
MluCI AATT 5 cut(s) 65, 99, 251, 348, 724
Mly113I GGCGCC 1 cut(s) 1013
MlyI GAGTC 2 cut(s) 332, 919
MmeI TCCRAC 3 cut(s) 214, 334, 1176
MseI TTAA 4 cut(s) 639, 728, 822, 1321
MspA1I CMGCKG 1 cut(s) 1144
MspI CCGG 8 cut(s) 42, 473, 487, 492, 671, 689, 962, 1047
MspR9I CCNGG 2 cut(s) 36, 734
MunI CAATTG 1 cut(s) 348
Mva1269I GAATGC 2 cut(s) 325, 1153
MvaI CCWGG 2 cut(s) 36, 734
MwoI GCNNNNNNNGC 5 cut(s) 38, 331, 807, 816, 868
NarI GGCGCC 1 cut(s) 1013
NdeII GATC 6 cut(s) 94, 655, 697, 750, 769, 1080
NlaIII CATG 7 cut(s) 281, 388, 433, 463, 635, 757, 1122
NlaIV GGNNCC 3 cut(s) 40, 345, 1014
NmeAIII GCCGAG 1 cut(s) 1159
NmuCI GTSAC 4 cut(s) 44, 240, 743, 1114
NspI RCATGY 1 cut(s) 635
NspV TTCGAA 1 cut(s) 1156
PagI TCATGA 2 cut(s) 429, 753
PaqCI CACCTGC 1 cut(s) 1009
PctI GAATGC 2 cut(s) 325, 1153
PfeI GAWTC 5 cut(s) 161, 179, 186, 782, 1303
PflMI CCANNNNNTGG 1 cut(s) 353
PinAI ACCGGT 1 cut(s) 491
PkrI GCNGC 7 cut(s) 58, 133, 219, 574, 741, 914, 1017
PleI GAGTC 2 cut(s) 332, 919
PluTI GGCGCC 1 cut(s) 1016
PpsI GAGTC 2 cut(s) 332, 919
Psp6I CCWGG 2 cut(s) 34, 732
PspEI GGTNACC 1 cut(s) 44
PspFI CCCAGC 1 cut(s) 28
PspGI CCWGG 2 cut(s) 34, 732
PspN4I GGNNCC 3 cut(s) 40, 345, 1014
PspPI GGNCC 4 cut(s) 39, 489, 686, 720
PvuII CAGCTG 1 cut(s) 1144
RsaI GTAC 2 cut(s) 677, 1100
RsaNI GTAC 2 cut(s) 676, 1099
Rsr2I CGGWCCG 1 cut(s) 489
RsrII CGGWCCG 1 cut(s) 489
SaqAI TTAA 4 cut(s) 639, 728, 822, 1321
SatI GCNGC 7 cut(s) 57, 132, 218, 573, 740, 913, 1016
Sau3AI GATC 6 cut(s) 94, 655, 697, 750, 769, 1080
Sau96I GGNCC 4 cut(s) 39, 489, 686, 720
SchI GAGTC 2 cut(s) 332, 919
ScrFI CCNGG 2 cut(s) 36, 734
SfcI CTRYAG 1 cut(s) 516
SfoI GGCGCC 1 cut(s) 1014
SfuI TTCGAA 1 cut(s) 1156
SinI GGWCC 2 cut(s) 489, 720
SmlI CTYRAG 3 cut(s) 207, 857, 947
SmoI CTYRAG 3 cut(s) 207, 857, 947
SpeI ACTAGT 1 cut(s) 16
Sse9I AATT 5 cut(s) 65, 99, 251, 348, 724
SsiI CCGC 2 cut(s) 1005, 1016
SspDI GGCGCC 1 cut(s) 1012
SspMI CTAG 3 cut(s) 17, 555, 984
StyD4I CCNGG 2 cut(s) 34, 732
TaaI ACNGT 4 cut(s) 112, 520, 1103, 1281
TaiI ACGT 1 cut(s) 315
TaqI TCGA 5 cut(s) 97, 933, 941, 1079, 1156
TaqII GACCGA 1 cut(s) 708
TasI AATT 5 cut(s) 65, 99, 251, 348, 724
TauI GCSGC 1 cut(s) 1018
TfiI GAWTC 5 cut(s) 161, 179, 186, 782, 1303
Tru1I TTAA 4 cut(s) 639, 728, 822, 1321
Tru9I TTAA 4 cut(s) 639, 728, 822, 1321
TseFI GTSAC 4 cut(s) 44, 240, 743, 1114
TseI GCWGC 6 cut(s) 56, 131, 217, 572, 739, 912
Tsp45I GTSAC 4 cut(s) 44, 240, 743, 1114
TspDTI ATGAA 8 cut(s) 13, 17, 141, 247, 306, 417, 418, 840
TspGWI ACGGA 1 cut(s) 1255
Van91I CCANNNNNTGG 1 cut(s) 353
VpaK11BI GGWCC 2 cut(s) 489, 720
XapI RAATTY 2 cut(s) 99, 251
XceI RCATGY 1 cut(s) 635
XcmI CCANNNNNNNNNTGG 1 cut(s) 391
XspI CTAG 3 cut(s) 17, 555, 984
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.