Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000853.1

Orthogroup ID

OG0002597

Physical Location & Seq

Genomic Coordinates Forward (+)

17607 .. 18512

Gene Structure 906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000853.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

atgaagagagcagaactagtgttcatcccagcaccaggggccggtcacctcgtagcagccttgcaattcggaaagcgtctgcttcagcgagatgatcgaatttcaatcacagttctttccatcaaatcagcagccccttcacctttaggttcatacacagaatcccttgttgcttcggaatcccgaatccaactcattgatgtccctcaagcagagctgcctccattagagtttgcaaagtcaccagctaaatttttcattctaaacattgagaaccatgtgcctaatgtcagggaggccctcactaactacgtttcatcatcacattctaagcccgactcggttccaattgttggagtggttcttgattttttctttgtcttcctgtttgatgtggtcaatgaactcaatctcccttcttatcttttcatgacgagcaatgcagggtatctttctgtcatgttccactttccggcgcaggatagccggaccggtgtgccacctaaagactccgatcctgattggttagtcccaggtattgtccccccagttcctactacagttttgcctgtgtctatgacagatggtagctactctagttatcttgggattgctgcgagatttagagaggccaaaggtatcatagcaaatacttgtgttgagttagaggcacatgcttttaactcgttttcagaagatcaaactacgcctccggtgtacccagttgggccggtgcttgatctcaacgatggtcaggctcggtccaatttaaaccatgcgcagcgtgacaggatcatgagctggcttgatgatcagcctgaagaatctgttgtgttcttatgttttggaagcttggggagctttacgtgcttgatctcaacgacggtcaggctcggtccaatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0008150 GO:0008152 GO:0008194 GO:0009414 GO:0009415 GO:0009628 GO:0009687 GO:0009819 GO:0009987 GO:0010029 GO:0010030 GO:0010035 GO:0010294 GO:0016740 GO:0016757 GO:0016758 GO:0019752 GO:0032787 GO:0035251 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048518 GO:0048580 GO:0048582 GO:0048878 GO:0050789 GO:0050793 GO:0050801 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0055081 GO:0055088 GO:0065007 GO:0065008 GO:0071704 GO:0080043 GO:0080044 GO:0080045 GO:1900140 GO:1901615 GO:1901700 GO:1902265 GO:1902644 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

301

Amino Acids

32.87

Weight (kDa)

5.02

Isoelectric Point (pI)

48.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07250 AT1G07260 AT2G29710 AT2G29730 AT2G29740 AT2G29750
fragaria_vesca	FvH4_3g38400
malus_domestica	MD11G1076200.v1.1 MD11G1076600.v1.1 MD11G1076800.v1.1
prunus_persica	Prupe.6G058900_v2.0.a1 Prupe.6G059000_v2.0.a1
pyrus_communis	pycom11g06400 pycom11g06420 pycom11g06440 pycom11g06460 pycom11g06470
rosa_chinensis	RchiOBHm_Chr5g0069021
rosa_laevigata	RLG00000020959 RLG00000022423 RLG00000036031
rosa_multiflora	Rmu_sc0000853.1_g000006 Rmu_sc0000853.1_g000007 Rmu_sc0000936.1_g000005 Rmu_sc0001913.1_g000022 Rmu_sc0003814.1_g000006 Rmu_sc0006282.1_g000037
rosa_roxburghii	Rroxscaffold_1G00004260 Rroxscaffold_1G00011700
rosa_rugosa	Rorug05G0395700 Rorug07G0215100
rosa_samantha	Rh1BG061100 Rh5BG471600 Rh5CG494000 Rh5DG484200 Rh6CG276400 Rh7BG348600
rosa_wichuraiana	Rw0G006100 Rw2G043210 Rw5G042260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	780
AccB7I	CCANNNNNTGG	1 cut(s)	353
AclWI	GGATC	2 cut(s)	509, 800
AcsI	RAATTY	2 cut(s)	99, 251
AcuI	CTGAAG	2 cut(s)	68, 840
AfaI	GTAC	1 cut(s)	719
AfiI	CCNNNNNNNGG	4 cut(s)	35, 41, 353, 472
AgeI	ACCGGT	1 cut(s)	491
AgsI	TTSAA	1 cut(s)	105
AhlI	ACTAGT	1 cut(s)	16
AjnI	CCWGG	2 cut(s)	34, 532
AloI	GAACNNNNNNTCC	2 cut(s)	396, 428
AluBI	AGCT	6 cut(s)	217, 248, 591, 801, 852, 861
AluI	AGCT	6 cut(s)	217, 248, 591, 801, 852, 861
AlwI	GGATC	2 cut(s)	509, 800
AoxI	GGCC	4 cut(s)	39, 297, 630, 728
ApeKI	GCWGC	5 cut(s)	56, 131, 217, 614, 781
ApoI	RAATTY	2 cut(s)	99, 251
AsiGI	ACCGGT	1 cut(s)	491
AspLEI	GCGC	2 cut(s)	478, 781
AspS9I	GGNCC	6 cut(s)	39, 298, 489, 728, 762, 896
AsuHPI	GGTGA	3 cut(s)	38, 132, 234
AvaII	GGWCC	3 cut(s)	489, 762, 896
BbsI	GAAGAC	1 cut(s)	373
BbvI	GCAGC	5 cut(s)	68, 143, 204, 601, 793
BccI	CCATC	3 cut(s)	128, 578, 743
BciT130I	CCWGG	2 cut(s)	36, 534
BclI	TGATCA	1 cut(s)	811
BcuI	ACTAGT	1 cut(s)	16
BfaI	CTAG	2 cut(s)	17, 597
BfmI	CTRYAG	1 cut(s)	558
BisI	GCNGC	5 cut(s)	57, 132, 218, 615, 782
BlsI	GCNGC	5 cut(s)	58, 133, 219, 616, 783
Bme1390I	CCNGG	2 cut(s)	36, 534
Bme18I	GGWCC	3 cut(s)	489, 762, 896
BmgT120I	GGNCC	6 cut(s)	39, 298, 489, 728, 762, 896
BmiI	GGNNCC	2 cut(s)	40, 345
BmrFI	CCNGG	2 cut(s)	36, 534
BmrI	ACTGGG	2 cut(s)	542, 716
BmuI	ACTGGG	2 cut(s)	542, 716
BpiI	GAAGAC	1 cut(s)	373
BpuEI	CTTGAG	1 cut(s)	192
BsaAI	YACGTR	1 cut(s)	867
BsaJI	CCNNGG	2 cut(s)	35, 532
BsaWI	WCCGGW	2 cut(s)	491, 712
BsaXI	ACNNNNNCTCC	4 cut(s)	396, 426, 694, 724
Bsc4I	CCNNNNNNNGG	4 cut(s)	35, 41, 353, 472
Bse118I	RCCGGY	3 cut(s)	41, 491, 730
Bse1I	ACTGG	2 cut(s)	548, 722
Bse3DI	GCAATG	1 cut(s)	445
BseBI	CCWGG	2 cut(s)	36, 534
BseDI	CCNNGG	2 cut(s)	35, 532
BseGI	GGATG	1 cut(s)	24
BseLI	CCNNNNNNNGG	4 cut(s)	35, 41, 353, 472
BseMI	GCAATG	1 cut(s)	445
BseNI	ACTGG	2 cut(s)	548, 722
BseXI	GCAGC	5 cut(s)	68, 143, 204, 601, 793
BseYI	CCCAGC	1 cut(s)	28
BshFI	GGCC	4 cut(s)	41, 299, 632, 730
BshTI	ACCGGT	1 cut(s)	491
BsiSI	CCGG	6 cut(s)	42, 473, 487, 492, 713, 731
BslFI	GGGAC	3 cut(s)	188, 515, 527
BslI	CCNNNNNNNGG	4 cut(s)	35, 41, 353, 472
BsmFI	GGGAC	3 cut(s)	188, 515, 527
BsnI	GGCC	4 cut(s)	41, 299, 632, 730
Bsp143I	GATC	7 cut(s)	94, 514, 697, 739, 792, 811, 873
BspANI	GGCC	4 cut(s)	41, 299, 632, 730
BspHI	TCATGA	2 cut(s)	429, 795
BspLI	GGNNCC	2 cut(s)	40, 345
BspPI	GGATC	2 cut(s)	509, 800
BsrDI	GCAATG	1 cut(s)	445
BsrFI	RCCGGY	3 cut(s)	41, 491, 730
BsrI	ACTGG	2 cut(s)	548, 722
BssAI	RCCGGY	3 cut(s)	41, 491, 730
BssECI	CCNNGG	2 cut(s)	35, 532
BssMI	GATC	7 cut(s)	94, 514, 697, 739, 792, 811, 873
Bst2UI	CCWGG	2 cut(s)	36, 534
Bst4CI	ACNGT	3 cut(s)	112, 562, 886
BstBAI	YACGTR	1 cut(s)	867
BstC8I	GCNNGC	1 cut(s)	803
BstDEI	CTNAG	1 cut(s)	330
BstEII	GGTNACC	1 cut(s)	44
BstF5I	GGATG	1 cut(s)	24
BstHHI	GCGC	2 cut(s)	478, 781
BstKTI	GATC	7 cut(s)	97, 517, 700, 742, 795, 814, 876
BstMBI	GATC	7 cut(s)	94, 514, 697, 739, 792, 811, 873
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 858, 867
BstNI	CCWGG	2 cut(s)	36, 534
BstNSI	RCATGY	1 cut(s)	677
BstPI	GGTNACC	1 cut(s)	44
BstSCI	CCNGG	2 cut(s)	34, 532
BstSFI	CTRYAG	1 cut(s)	558
BstV1I	GCAGC	5 cut(s)	68, 143, 204, 601, 793
BstV2I	GAAGAC	1 cut(s)	373
BsuRI	GGCC	4 cut(s)	41, 299, 632, 730
BtsCI	GGATG	1 cut(s)	24
Cac8I	GCNNGC	1 cut(s)	803
CciI	TCATGA	2 cut(s)	429, 795
CfoI	GCGC	2 cut(s)	478, 781
Cfr10I	RCCGGY	3 cut(s)	41, 491, 730
Cfr13I	GGNCC	6 cut(s)	39, 298, 489, 728, 762, 896
CpoI	CGGWCCG	1 cut(s)	489
CseI	GACGC	1 cut(s)	65
Csp6I	GTAC	1 cut(s)	718
CspAI	ACCGGT	1 cut(s)	491
CspI	CGGWCCG	1 cut(s)	489
CviAII	CATG	6 cut(s)	278, 430, 460, 674, 776, 796
CviQI	GTAC	1 cut(s)	718
DdeI	CTNAG	1 cut(s)	330
DpnI	GATC	7 cut(s)	96, 516, 699, 741, 794, 813, 875
DpnII	GATC	7 cut(s)	94, 514, 697, 739, 792, 811, 873
DraI	TTTAAA	1 cut(s)	771
Eco47I	GGWCC	3 cut(s)	489, 762, 896
Eco57I	CTGAAG	2 cut(s)	68, 840
Eco91I	GGTNACC	1 cut(s)	44
EcoO109I	RGGNCCY	1 cut(s)	298
EcoO65I	GGTNACC	1 cut(s)	44
EcoRII	CCWGG	2 cut(s)	34, 532
FaeI	CATG	6 cut(s)	281, 433, 463, 677, 779, 799
FaqI	GGGAC	3 cut(s)	188, 515, 527
FatI	CATG	6 cut(s)	277, 429, 459, 673, 775, 795
FbaI	TGATCA	1 cut(s)	811
Fnu4HI	GCNGC	5 cut(s)	57, 132, 218, 615, 782
FokI	GGATG	1 cut(s)	11
Fsp4HI	GCNGC	5 cut(s)	57, 132, 218, 615, 782
FspBI	CTAG	2 cut(s)	17, 597
FspI	TGCGCA	1 cut(s)	780
GlaI	GCGC	2 cut(s)	477, 780
GluI	GCNGC	5 cut(s)	57, 132, 218, 615, 782
GsaI	CCCAGC	1 cut(s)	32
HaeIII	GGCC	4 cut(s)	41, 299, 632, 730
HapII	CCGG	6 cut(s)	42, 473, 487, 492, 713, 731
HgaI	GACGC	1 cut(s)	65
HhaI	GCGC	2 cut(s)	478, 781
Hin1II	CATG	6 cut(s)	281, 433, 463, 677, 779, 799
Hin6I	GCGC	2 cut(s)	476, 779
HinP1I	GCGC	2 cut(s)	476, 779
HindIII	AAGCTT	1 cut(s)	850
HinfI	GANTC	6 cut(s)	161, 179, 186, 338, 509, 824
HpaII	CCGG	6 cut(s)	42, 473, 487, 492, 713, 731
HphI	GGTGA	3 cut(s)	38, 132, 234
Hpy166II	GTNNAC	1 cut(s)	718
Hpy188I	TCNGA	4 cut(s)	71, 178, 514, 694
Hpy188III	TCNNGA	5 cut(s)	183, 365, 430, 518, 796
Hpy8I	GTNNAC	1 cut(s)	718
Hpy99I	CGWCG	1 cut(s)	886
HpyAV	CCTTC	2 cut(s)	147, 426
HpyCH4III	ACNGT	3 cut(s)	112, 562, 886
HpyCH4IV	ACGT	2 cut(s)	312, 866
HpyCH4V	TGCA	3 cut(s)	64, 236, 443
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 858, 867
HpyF3I	CTNAG	1 cut(s)	330
HpySE526I	ACGT	2 cut(s)	312, 866
Hsp92II	CATG	6 cut(s)	281, 433, 463, 677, 779, 799
HspAI	GCGC	2 cut(s)	476, 779
Ksp22I	TGATCA	1 cut(s)	811
Kzo9I	GATC	7 cut(s)	94, 514, 697, 739, 792, 811, 873
LmnI	GCTCC	1 cut(s)	858
Lsp1109I	GCAGC	5 cut(s)	68, 143, 204, 601, 793
MaeI	CTAG	2 cut(s)	17, 597
MaeII	ACGT	2 cut(s)	312, 866
MaeIII	GTNAC	3 cut(s)	44, 240, 785
MalI	GATC	7 cut(s)	96, 516, 699, 741, 794, 813, 875
MboI	GATC	7 cut(s)	94, 514, 697, 739, 792, 811, 873
MboII	GAAGA	4 cut(s)	16, 373, 707, 833
MfeI	CAATTG	1 cut(s)	348
MluCI	AATT	6 cut(s)	65, 99, 251, 348, 766, 900
MlyI	GAGTC	2 cut(s)	332, 503
MmeI	TCCRAC	2 cut(s)	214, 334
MnlI	CCTC	8 cut(s)	59, 216, 231, 289, 311, 622, 661, 720
MseI	TTAA	3 cut(s)	681, 770, 904
MspI	CCGG	6 cut(s)	42, 473, 487, 492, 713, 731
MspR9I	CCNGG	2 cut(s)	36, 534
MunI	CAATTG	1 cut(s)	348
MvaI	CCWGG	2 cut(s)	36, 534
MwoI	GCNNNNNNNGC	3 cut(s)	38, 858, 867
NdeII	GATC	7 cut(s)	94, 514, 697, 739, 792, 811, 873
NlaIII	CATG	6 cut(s)	281, 433, 463, 677, 779, 799
NlaIV	GGNNCC	2 cut(s)	40, 345
NmuCI	GTSAC	3 cut(s)	44, 240, 785
NsbI	TGCGCA	1 cut(s)	780
NspI	RCATGY	1 cut(s)	677
PagI	TCATGA	2 cut(s)	429, 795
PfeI	GAWTC	4 cut(s)	161, 179, 186, 824
PflMI	CCANNNNNTGG	1 cut(s)	353
PinAI	ACCGGT	1 cut(s)	491
PkrI	GCNGC	5 cut(s)	58, 133, 219, 616, 783
PleI	GAGTC	2 cut(s)	332, 503
PpsI	GAGTC	2 cut(s)	332, 503
Ppu21I	YACGTR	1 cut(s)	867
Psp6I	CCWGG	2 cut(s)	34, 532
PspEI	GGTNACC	1 cut(s)	44
PspFI	CCCAGC	1 cut(s)	28
PspGI	CCWGG	2 cut(s)	34, 532
PspN4I	GGNNCC	2 cut(s)	40, 345
PspPI	GGNCC	6 cut(s)	39, 298, 489, 728, 762, 896
RsaI	GTAC	1 cut(s)	719
RsaNI	GTAC	1 cut(s)	718
Rsr2I	CGGWCCG	1 cut(s)	489
RsrII	CGGWCCG	1 cut(s)	489
SaqAI	TTAA	3 cut(s)	681, 770, 904
SatI	GCNGC	5 cut(s)	57, 132, 218, 615, 782
Sau3AI	GATC	7 cut(s)	94, 514, 697, 739, 792, 811, 873
Sau96I	GGNCC	6 cut(s)	39, 298, 489, 728, 762, 896
SchI	GAGTC	2 cut(s)	332, 503
ScrFI	CCNGG	2 cut(s)	36, 534
SfcI	CTRYAG	1 cut(s)	558
SinI	GGWCC	3 cut(s)	489, 762, 896
SmlI	CTYRAG	1 cut(s)	207
SmoI	CTYRAG	1 cut(s)	207
SpeI	ACTAGT	1 cut(s)	16
Sse9I	AATT	6 cut(s)	65, 99, 251, 348, 766, 900
SspMI	CTAG	2 cut(s)	17, 597
StyD4I	CCNGG	2 cut(s)	34, 532
TaaI	ACNGT	3 cut(s)	112, 562, 886
TaiI	ACGT	2 cut(s)	315, 869
TaqI	TCGA	1 cut(s)	97
TaqII	GACCGA	2 cut(s)	750, 884
TasI	AATT	6 cut(s)	65, 99, 251, 348, 766, 900
TfiI	GAWTC	4 cut(s)	161, 179, 186, 824
Tru1I	TTAA	3 cut(s)	681, 770, 904
Tru9I	TTAA	3 cut(s)	681, 770, 904
TseFI	GTSAC	3 cut(s)	44, 240, 785
TseI	GCWGC	5 cut(s)	56, 131, 217, 614, 781
Tsp45I	GTSAC	3 cut(s)	44, 240, 785
TspDTI	ATGAA	7 cut(s)	13, 17, 141, 247, 306, 417, 418
Van91I	CCANNNNNTGG	1 cut(s)	353
VpaK11BI	GGWCC	3 cut(s)	489, 762, 896
XapI	RAATTY	2 cut(s)	99, 251
XceI	RCATGY	1 cut(s)	677
XspI	CTAG	2 cut(s)	17, 597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.