Rroxscaffold_1G00011700

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
14706818 .. 14709116
2299 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00011700.1

Sequence Viewer

Length: 1509 bp
ATGAAGAGAGCAGAACTAGTGTTCATCCCAGCACCAGGGGCCGGTCACCTCGTAGCAGCCTTGCAATTCGGAAAGCGTCTGCTTCAGCGAGATGATCGAATTTCAATCACAGTTCTTGCCATCAAATCAGCAGCCCCTTCACCTTTAGGTTCATACACAGAATCCCTTGTTGCTTCGGAATCCCGAATCCAACTCATTGATGTCCCTCAAGCAGAGCTGCCTCCATTAGAGTTTGCAAAGTCACCAGCTAAATTTTTCATTCTAAACATTGAGAACCATGTGCCTAATGTCAGGGAGGCCCTCATAAACTATGTCTCGTCATCACATTCTAAGCCCGACTCGGTTCCAATTGTTGGAGTGGTTCTTGATTTCTTCTGTGTCTCCATGATTGATGTGGTTAATGAACTCAATCTCCCTTCTTATCTTTTCATGACCAGCAATGCAGGGTATTGTCCCCCAGTTCCTACTACAGTTTTACCTGTGTCCTTGACAGATGGTAGCTACTCTAGTTATCTTGGGATTGCTGCGAGATTTAGAGAGGCCAAAGGTATCATAGCAAATTCATGTGTTGAGTTAGAGGCACATGCTTTTAACTCGTTTTTAGAAGATCAAACTACGCCTCCGGTGTACCCAGTTGGGCCGGTGCTTGATCTCAACGATGGTCAGGCTCGGTCCAATTTAAACCAGGCGCAGCGTGACAGGATCATGAGCTGGCTTGATGATCAGCCTGAAGAATCTGTTGTGTTCTTATGCTTTGGAAGCTTGGGGAGCTTTAATGAAGCACAAGTGAAGGAGATAGCTCTGGGGCTTGAGCAGAGTGGGCAGAGGTTCTTGTGGTCTTTGCGTTTGACACCACCAAAAGGCAGCAAAACTTTGACTCCTATCGACTGCTCGAACCTTAAGGAAGTCTTGCCGGATGGGTTTTTGGAGAGGACTAGAGGAAAGGGACTGATATGCGGGTGGACGCCGCAGGTGGAAGTCTTGTCCCACAAGGCAACCGGAGGCTTTGTGTCGCATTGTGGGTGGAACTCGATCTTGGAGAGCTTGTGGTACGGTGTGCCTATTGTGACATGGCCTATGTATGCCGAGCAACAGCTGAATGCGTTTCGAATGGTGAAGGAGTTGGGGTTGGGATTGGAGATGAGGTTGGATTACAAGAAAGGTGGTGAGGTTGTGAAGGCAGATGAGATAGGGAAGGCAGTGGTTAGTGTAATGGAGGACAGCGAGGTGAGGAAGAAGGTTAAAGAGATGGGGGTGGTGAGCAGAAAAGCTGTAGAGGACGGTGGGTCTTCCTCCGTTTCTCTTGGACGGTTTATTGAAGATGTGATGAGGAATCATTTTGGTTTTGAAAAAGTGGTTCAAGCCAATGAAGAGCTTAACAGCTCCCCTGTTTTGGTCAACTCAAGTCCGTATGAGAAGGGATGGATAAATGATAGTGGAGAACTGAAGAAGTTGATTGATTCAGATACGTACACGGAGATGCACATTGGGCTATTGCAGCAAGCGTGA

Protein Analysis

502

Amino Acids

55.15

Weight (kDa)

5.26

Isoelectric Point (pI)

45.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 239 - 376 9.9e-24 UDP-glucoronosyl and UDP-glucosyl transferase
GCV_H PF01597 451 - 493 6.4e-06 Glycine cleavage H-protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 961
Acc36I ACCTGC 1 cut(s) 961
AccB7I CCANNNNNTGG 1 cut(s) 353
AciI CCGC 2 cut(s) 957, 968
AclWI GGATC 1 cut(s) 710
AcsI RAATTY 3 cut(s) 99, 251, 559
AcuI CTGAAG 3 cut(s) 68, 750, 1466
AcyI GRCGYC 1 cut(s) 965
AfaI GTAC 3 cut(s) 629, 1052, 1472
AfiI CCNNNNNNNGG 5 cut(s) 35, 41, 353, 860, 1393
AflII CTTAAG 1 cut(s) 899
AgsI TTSAA 4 cut(s) 105, 1319, 1349, 1361
AhdI GACNNNNNGTC 1 cut(s) 1285
AhlI ACTAGT 1 cut(s) 16
AjnI CCWGG 2 cut(s) 34, 684
AjuI GAANNNNNNNTTGG 2 cut(s) 1019, 1051
AloI GAACNNNNNNTCC 2 cut(s) 396, 428
Alw26I GTCTC 2 cut(s) 319, 385
AlwI GGATC 1 cut(s) 710
AoxI GGCC 5 cut(s) 39, 297, 540, 638, 1073
ApeKI GCWGC 7 cut(s) 56, 131, 217, 524, 691, 864, 1498
ApoI RAATTY 3 cut(s) 99, 251, 559
AspLEI GCGC 1 cut(s) 691
AspS9I GGNCC 4 cut(s) 39, 298, 638, 672
AsuHPI GGTGA 7 cut(s) 38, 132, 234, 1126, 1178, 1240, 1270
AsuII TTCGAA 1 cut(s) 1108
AvaII GGWCC 1 cut(s) 672
BbsI GAAGAC 1 cut(s) 1281
BbvI GCAGC 6 cut(s) 68, 143, 204, 511, 703, 876
BccI CCATC 6 cut(s) 128, 488, 653, 911, 1243, 1416
BciT130I CCWGG 2 cut(s) 36, 686
BclI TGATCA 1 cut(s) 721
BcoDI GTCTC 2 cut(s) 319, 385
BcuI ACTAGT 1 cut(s) 16
BfaI CTAG 3 cut(s) 17, 507, 936
BfmI CTRYAG 2 cut(s) 468, 1272
BfrI CTTAAG 1 cut(s) 899
BfuAI ACCTGC 1 cut(s) 961
BisI GCNGC 8 cut(s) 57, 132, 218, 525, 692, 865, 968, 1499
BlsI GCNGC 8 cut(s) 58, 133, 219, 526, 693, 866, 969, 1500
Bme1390I CCNGG 2 cut(s) 36, 686
Bme18I GGWCC 1 cut(s) 672
BmeRI GACNNNNNGTC 1 cut(s) 1285
BmgT120I GGNCC 4 cut(s) 39, 298, 638, 672
BmiI GGNNCC 2 cut(s) 40, 345
BmrFI CCNGG 2 cut(s) 36, 686
BmrI ACTGGG 2 cut(s) 452, 626
BmsI GCATC 1 cut(s) 1470
BmuI ACTGGG 2 cut(s) 452, 626
BpiI GAAGAC 1 cut(s) 1281
Bpu14I TTCGAA 1 cut(s) 1108
BpuEI CTTGAG 3 cut(s) 192, 830, 1387
BsaAI YACGTR 1 cut(s) 1470
BsaHI GRCGYC 1 cut(s) 965
BsaJI CCNNGG 1 cut(s) 35
BsaWI WCCGGW 2 cut(s) 622, 998
Bsc4I CCNNNNNNNGG 5 cut(s) 35, 41, 353, 860, 1393
Bse118I RCCGGY 2 cut(s) 41, 640
Bse1I ACTGG 2 cut(s) 458, 632
Bse3DI GCAATG 1 cut(s) 445
BseBI CCWGG 2 cut(s) 36, 686
BseDI CCNNGG 1 cut(s) 35
BseGI GGATG 3 cut(s) 24, 922, 1427
BseLI CCNNNNNNNGG 5 cut(s) 35, 41, 353, 860, 1393
BseMI GCAATG 1 cut(s) 445
BseNI ACTGG 2 cut(s) 458, 632
BseXI GCAGC 6 cut(s) 68, 143, 204, 511, 703, 876
BseYI CCCAGC 1 cut(s) 28
BshFI GGCC 5 cut(s) 41, 299, 542, 640, 1075
BsiSI CCGG 5 cut(s) 42, 623, 641, 914, 999
BslFI GGGAC 4 cut(s) 188, 438, 960, 970
BslI CCNNNNNNNGG 5 cut(s) 35, 41, 353, 860, 1393
BsmAI GTCTC 2 cut(s) 319, 385
BsmFI GGGAC 4 cut(s) 188, 438, 960, 970
BsmI GAATGC 1 cut(s) 1105
BsnI GGCC 5 cut(s) 41, 299, 542, 640, 1075
Bsp119I TTCGAA 1 cut(s) 1108
Bsp143I GATC 6 cut(s) 94, 607, 649, 702, 721, 1032
BspACI CCGC 2 cut(s) 957, 968
BspANI GGCC 5 cut(s) 41, 299, 542, 640, 1075
BspHI TCATGA 2 cut(s) 429, 705
BspLI GGNNCC 2 cut(s) 40, 345
BspMI ACCTGC 1 cut(s) 961
BspPI GGATC 1 cut(s) 710
BspQI GCTCTTC 1 cut(s) 1365
BspT104I TTCGAA 1 cut(s) 1108
BspTI CTTAAG 1 cut(s) 899
BsrDI GCAATG 1 cut(s) 445
BsrFI RCCGGY 2 cut(s) 41, 640
BsrI ACTGG 2 cut(s) 458, 632
BssAI RCCGGY 2 cut(s) 41, 640
BssECI CCNNGG 1 cut(s) 35
BssMI GATC 6 cut(s) 94, 607, 649, 702, 721, 1032
BssNI GRCGYC 1 cut(s) 965
Bst2UI CCWGG 2 cut(s) 36, 686
Bst4CI ACNGT 5 cut(s) 112, 472, 1055, 1283, 1311
Bst6I CTCTTC 1 cut(s) 1365
BstACI GRCGYC 1 cut(s) 965
BstAFI CTTAAG 1 cut(s) 899
BstBAI YACGTR 1 cut(s) 1470
BstBI TTCGAA 1 cut(s) 1108
BstC8I GCNNGC 2 cut(s) 713, 1503
BstDEI CTNAG 1 cut(s) 330
BstEII GGTNACC 1 cut(s) 44
BstF5I GGATG 3 cut(s) 24, 922, 1427
BstHHI GCGC 1 cut(s) 691
BstKTI GATC 6 cut(s) 97, 610, 652, 705, 724, 1035
BstMAI GTCTC 2 cut(s) 319, 385
BstMBI GATC 6 cut(s) 94, 607, 649, 702, 721, 1032
BstMWI GCNNNNNNNGC 6 cut(s) 38, 759, 768, 820, 1489, 1498
BstNI CCWGG 2 cut(s) 36, 686
BstNSI RCATGY 1 cut(s) 587
BstPI GGTNACC 1 cut(s) 44
BstSCI CCNGG 2 cut(s) 34, 684
BstSFI CTRYAG 2 cut(s) 468, 1272
BstSNI TACGTA 1 cut(s) 1470
BstV1I GCAGC 6 cut(s) 68, 143, 204, 511, 703, 876
BstV2I GAAGAC 1 cut(s) 1281
BsuRI GGCC 5 cut(s) 41, 299, 542, 640, 1075
BtsCI GGATG 3 cut(s) 24, 922, 1427
BtsI GCAGTG 1 cut(s) 1206
BtsIMutI CAGTG 1 cut(s) 1206
BveI ACCTGC 1 cut(s) 961
Cac8I GCNNGC 2 cut(s) 713, 1503
CciI TCATGA 2 cut(s) 429, 705
CfoI GCGC 1 cut(s) 691
Cfr10I RCCGGY 2 cut(s) 41, 640
Cfr13I GGNCC 4 cut(s) 39, 298, 638, 672
CseI GACGC 2 cut(s) 65, 973
Csp6I GTAC 3 cut(s) 628, 1051, 1471
CspCI CAANNNNNGTGG 2 cut(s) 1144, 1179
CviAII CATG 7 cut(s) 278, 385, 430, 564, 584, 706, 1071
CviQI GTAC 3 cut(s) 628, 1051, 1471
DdeI CTNAG 1 cut(s) 330
DpnI GATC 6 cut(s) 96, 609, 651, 704, 723, 1034
DpnII GATC 6 cut(s) 94, 607, 649, 702, 721, 1032
DraI TTTAAA 1 cut(s) 681
DriI GACNNNNNGTC 1 cut(s) 1285
Eam1104I CTCTTC 1 cut(s) 1365
Eam1105I GACNNNNNGTC 1 cut(s) 1285
EarI CTCTTC 1 cut(s) 1365
Eco105I TACGTA 1 cut(s) 1470
Eco47I GGWCC 1 cut(s) 672
Eco57I CTGAAG 3 cut(s) 68, 750, 1466
Eco91I GGTNACC 1 cut(s) 44
EcoO109I RGGNCCY 1 cut(s) 298
EcoO65I GGTNACC 1 cut(s) 44
EcoRII CCWGG 2 cut(s) 34, 684
FaeI CATG 7 cut(s) 281, 388, 433, 567, 587, 709, 1074
FalI AAGNNNNNCTT 2 cut(s) 893, 925
FaqI GGGAC 4 cut(s) 188, 438, 960, 970
FatI CATG 7 cut(s) 277, 384, 429, 563, 583, 705, 1070
FauI CCCGC 1 cut(s) 950
FbaI TGATCA 1 cut(s) 721
Fnu4HI GCNGC 8 cut(s) 57, 132, 218, 525, 692, 865, 968, 1499
FokI GGATG 3 cut(s) 11, 929, 1434
Fsp4HI GCNGC 8 cut(s) 57, 132, 218, 525, 692, 865, 968, 1499
FspBI CTAG 3 cut(s) 17, 507, 936
GlaI GCGC 1 cut(s) 690
GluI GCNGC 8 cut(s) 57, 132, 218, 525, 692, 865, 968, 1499
GsaI CCCAGC 1 cut(s) 32
HaeIII GGCC 5 cut(s) 41, 299, 542, 640, 1075
HapII CCGG 5 cut(s) 42, 623, 641, 914, 999
HgaI GACGC 2 cut(s) 65, 973
HhaI GCGC 1 cut(s) 691
Hin1I GRCGYC 1 cut(s) 965
Hin1II CATG 7 cut(s) 281, 388, 433, 567, 587, 709, 1074
Hin6I GCGC 1 cut(s) 689
HinP1I GCGC 1 cut(s) 689
HincII GTYRAC 1 cut(s) 1399
HindII GTYRAC 1 cut(s) 1399
HindIII AAGCTT 1 cut(s) 760
HinfI GANTC 8 cut(s) 161, 179, 186, 338, 734, 877, 1333, 1460
HpaII CCGG 5 cut(s) 42, 623, 641, 914, 999
HphI GGTGA 7 cut(s) 38, 132, 234, 1126, 1178, 1240, 1270
Hpy166II GTNNAC 4 cut(s) 628, 963, 1399, 1473
Hpy188I TCNGA 3 cut(s) 71, 178, 1465
Hpy188III TCNNGA 4 cut(s) 183, 365, 430, 706
Hpy8I GTNNAC 4 cut(s) 628, 963, 1399, 1473
HpyAV CCTTC 8 cut(s) 147, 426, 784, 1111, 1171, 1189, 1231, 1411
HpyCH4III ACNGT 5 cut(s) 112, 472, 1055, 1283, 1311
HpyCH4IV ACGT 1 cut(s) 1469
HpyCH4V TGCA 5 cut(s) 64, 236, 443, 1483, 1498
HpyF10VI GCNNNNNNNGC 6 cut(s) 38, 759, 768, 820, 1489, 1498
HpyF3I CTNAG 1 cut(s) 330
HpySE526I ACGT 1 cut(s) 1469
Hsp92I GRCGYC 1 cut(s) 965
Hsp92II CATG 7 cut(s) 281, 388, 433, 567, 587, 709, 1074
HspAI GCGC 1 cut(s) 689
Ksp22I TGATCA 1 cut(s) 721
Kzo9I GATC 6 cut(s) 94, 607, 649, 702, 721, 1032
LguI GCTCTTC 1 cut(s) 1365
LmnI GCTCC 2 cut(s) 768, 1388
Lsp1109I GCAGC 6 cut(s) 68, 143, 204, 511, 703, 876
LweI GCATC 1 cut(s) 1470
MaeI CTAG 3 cut(s) 17, 507, 936
MaeII ACGT 1 cut(s) 1469
MaeIII GTNAC 4 cut(s) 44, 240, 695, 1066
MalI GATC 6 cut(s) 96, 609, 651, 704, 723, 1034
MboI GATC 6 cut(s) 94, 607, 649, 702, 721, 1032
MboII GAAGA 9 cut(s) 16, 364, 617, 743, 1246, 1281, 1331, 1382, 1459
MfeI CAATTG 1 cut(s) 348
MluCI AATT 6 cut(s) 65, 99, 251, 348, 559, 676
MlyI GAGTC 2 cut(s) 332, 871
MmeI TCCRAC 3 cut(s) 214, 334, 1128
MseI TTAA 7 cut(s) 399, 591, 680, 774, 900, 1242, 1377
MslI CAYNNNNRTG 1 cut(s) 1478
MspA1I CMGCKG 1 cut(s) 1096
MspCI CTTAAG 1 cut(s) 899
MspI CCGG 5 cut(s) 42, 623, 641, 914, 999
MspR9I CCNGG 2 cut(s) 36, 686
MunI CAATTG 1 cut(s) 348
Mva1269I GAATGC 1 cut(s) 1105
MvaI CCWGG 2 cut(s) 36, 686
MwoI GCNNNNNNNGC 6 cut(s) 38, 759, 768, 820, 1489, 1498
NdeII GATC 6 cut(s) 94, 607, 649, 702, 721, 1032
NlaIII CATG 7 cut(s) 281, 388, 433, 567, 587, 709, 1074
NlaIV GGNNCC 2 cut(s) 40, 345
NmeAIII GCCGAG 1 cut(s) 1111
NmuCI GTSAC 4 cut(s) 44, 240, 695, 1066
NspI RCATGY 1 cut(s) 587
NspV TTCGAA 1 cut(s) 1108
PagI TCATGA 2 cut(s) 429, 705
PaqCI CACCTGC 1 cut(s) 961
PciSI GCTCTTC 1 cut(s) 1365
PctI GAATGC 1 cut(s) 1105
PfeI GAWTC 6 cut(s) 161, 179, 186, 734, 1333, 1460
PflMI CCANNNNNTGG 1 cut(s) 353
PkrI GCNGC 8 cut(s) 58, 133, 219, 526, 693, 866, 969, 1500
PleI GAGTC 2 cut(s) 332, 871
PpsI GAGTC 2 cut(s) 332, 871
Ppu21I YACGTR 1 cut(s) 1470
Psp6I CCWGG 2 cut(s) 34, 684
PspEI GGTNACC 1 cut(s) 44
PspFI CCCAGC 1 cut(s) 28
PspGI CCWGG 2 cut(s) 34, 684
PspN4I GGNNCC 2 cut(s) 40, 345
PspPI GGNCC 4 cut(s) 39, 298, 638, 672
PvuII CAGCTG 1 cut(s) 1096
RsaI GTAC 3 cut(s) 629, 1052, 1472
RsaNI GTAC 3 cut(s) 628, 1051, 1471
RseI CAYNNNNRTG 1 cut(s) 1478
SapI GCTCTTC 1 cut(s) 1365
SaqAI TTAA 7 cut(s) 399, 591, 680, 774, 900, 1242, 1377
SatI GCNGC 8 cut(s) 57, 132, 218, 525, 692, 865, 968, 1499
Sau3AI GATC 6 cut(s) 94, 607, 649, 702, 721, 1032
Sau96I GGNCC 4 cut(s) 39, 298, 638, 672
SchI GAGTC 2 cut(s) 332, 871
ScrFI CCNGG 2 cut(s) 36, 686
SfaNI GCATC 1 cut(s) 1470
SfcI CTRYAG 2 cut(s) 468, 1272
SfuI TTCGAA 1 cut(s) 1108
SinI GGWCC 1 cut(s) 672
SmiMI CAYNNNNRTG 1 cut(s) 1478
SmlI CTYRAG 4 cut(s) 207, 809, 899, 1402
SmoI CTYRAG 4 cut(s) 207, 809, 899, 1402
SnaBI TACGTA 1 cut(s) 1470
SpeI ACTAGT 1 cut(s) 16
Sse9I AATT 6 cut(s) 65, 99, 251, 348, 559, 676
SsiI CCGC 2 cut(s) 957, 968
SspMI CTAG 3 cut(s) 17, 507, 936
StyD4I CCNGG 2 cut(s) 34, 684
TaaI ACNGT 5 cut(s) 112, 472, 1055, 1283, 1311
TaiI ACGT 1 cut(s) 1472
TaqI TCGA 5 cut(s) 97, 885, 893, 1031, 1108
TaqII GACCGA 1 cut(s) 660
TasI AATT 6 cut(s) 65, 99, 251, 348, 559, 676
TauI GCSGC 1 cut(s) 970
TfiI GAWTC 6 cut(s) 161, 179, 186, 734, 1333, 1460
Tru1I TTAA 7 cut(s) 399, 591, 680, 774, 900, 1242, 1377
Tru9I TTAA 7 cut(s) 399, 591, 680, 774, 900, 1242, 1377
TscAI CASTG 1 cut(s) 1206
TseFI GTSAC 4 cut(s) 44, 240, 695, 1066
TseI GCWGC 7 cut(s) 56, 131, 217, 524, 691, 864, 1498
Tsp45I GTSAC 4 cut(s) 44, 240, 695, 1066
TspDTI ATGAA 9 cut(s) 13, 17, 141, 247, 417, 418, 552, 792, 1383
TspGWI ACGGA 3 cut(s) 1285, 1398, 1490
TspRI CASTG 1 cut(s) 1206
Van91I CCANNNNNTGG 1 cut(s) 353
Vha464I CTTAAG 1 cut(s) 899
VpaK11BI GGWCC 1 cut(s) 672
XapI RAATTY 3 cut(s) 99, 251, 559
XceI RCATGY 1 cut(s) 587
XcmI CCANNNNNNNNNTGG 1 cut(s) 391
XspI CTAG 3 cut(s) 17, 507, 936
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.