Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001913.1

Orthogroup ID

OG0002597

Physical Location & Seq

Genomic Coordinates Forward (+)

53914 .. 55255

Gene Structure 1342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001913.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

atggaggctggcaatgctgttatggctgtattattcaaaagaagagttatcaaccatcttcccaatgccggcatccaatctctcaaatttcaaacagccagaaagaacaagcgtttcattagctttcaactcacagaaactccttggaagatccttaagcctagtgcagaatttgaaatttaccgaggcaaggcttttaagatctccaatggactggtgaatttcacccaaacttttagtctttcaggatcaaatactcaagactttgggagttttgagaagtctggtgattgttttaggatcatgagctggcttgatgatcagcctgaagaatctgttgtgttcttatgctttggtagcttggggagctttaatgaagcacaagtgaaggagatagctctagggcttgagcagagtgggcagaggttcttgtggtcttgcatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0008150 GO:0008152 GO:0008194 GO:0009414 GO:0009415 GO:0009628 GO:0009687 GO:0009819 GO:0009987 GO:0010029 GO:0010030 GO:0010035 GO:0010294 GO:0016740 GO:0016757 GO:0016758 GO:0019752 GO:0032787 GO:0035251 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048518 GO:0048580 GO:0048582 GO:0048878 GO:0050789 GO:0050793 GO:0050801 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0055081 GO:0055088 GO:0065007 GO:0065008 GO:0071704 GO:0080043 GO:0080044 GO:0080045 GO:1900140 GO:1901615 GO:1901700 GO:1902265 GO:1902644 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

148

Amino Acids

16.73

Weight (kDa)

8.86

Isoelectric Point (pI)

38.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07250 AT1G07260 AT2G29710 AT2G29730 AT2G29740 AT2G29750
fragaria_vesca	FvH4_3g38400
malus_domestica	MD11G1076200.v1.1 MD11G1076600.v1.1 MD11G1076800.v1.1
prunus_persica	Prupe.6G058900_v2.0.a1 Prupe.6G059000_v2.0.a1
pyrus_communis	pycom11g06400 pycom11g06420 pycom11g06440 pycom11g06460 pycom11g06470
rosa_chinensis	RchiOBHm_Chr5g0069021
rosa_laevigata	RLG00000020959 RLG00000022423 RLG00000036031
rosa_multiflora	Rmu_sc0000853.1_g000006 Rmu_sc0000853.1_g000007 Rmu_sc0000936.1_g000005 Rmu_sc0001913.1_g000022 Rmu_sc0003814.1_g000006 Rmu_sc0006282.1_g000037
rosa_roxburghii	Rroxscaffold_1G00004260 Rroxscaffold_1G00011700
rosa_rugosa	Rorug05G0395700 Rorug07G0215100
rosa_samantha	Rh1BG061100 Rh5BG471600 Rh5CG494000 Rh5DG484200 Rh6CG276400 Rh7BG348600
rosa_wichuraiana	Rw0G006100 Rw2G043210 Rw5G042260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	145, 256, 308
AcsI	RAATTY	4 cut(s)	86, 170, 177, 220
AcuI	CTGAAG	1 cut(s)	348
AfiI	CCNNNNNNNGG	2 cut(s)	68, 190
AflII	CTTAAG	1 cut(s)	155
AgsI	TTSAA	4 cut(s)	37, 92, 128, 176
AluBI	AGCT	5 cut(s)	123, 309, 360, 369, 398
AluI	AGCT	5 cut(s)	123, 309, 360, 369, 398
AlwI	GGATC	3 cut(s)	145, 256, 308
ApoI	RAATTY	4 cut(s)	86, 170, 177, 220
ArsI	GACNNNNNNTTYG	2 cut(s)	223, 255
AsuHPI	GGTGA	3 cut(s)	217, 229, 299
BccI	CCATC	1 cut(s)	63
BclI	TGATCA	1 cut(s)	319
BfaI	CTAG	2 cut(s)	162, 401
BfrI	CTTAAG	1 cut(s)	155
BglII	AGATCT	1 cut(s)	201
BmsI	GCATC	1 cut(s)	81
BpuEI	CTTGAG	2 cut(s)	243, 428
BsaJI	CCNNGG	2 cut(s)	143, 184
BsaXI	ACNNNNNCTCC	2 cut(s)	124, 154
Bsc4I	CCNNNNNNNGG	2 cut(s)	68, 190
Bse118I	RCCGGY	1 cut(s)	68
Bse1I	ACTGG	1 cut(s)	219
Bse3DI	GCAATG	1 cut(s)	19
BseDI	CCNNGG	2 cut(s)	143, 184
BseGI	GGATG	1 cut(s)	72
BseLI	CCNNNNNNNGG	2 cut(s)	68, 190
BseMI	GCAATG	1 cut(s)	19
BseNI	ACTGG	1 cut(s)	219
BsgI	GTGCAG	1 cut(s)	186
BsiSI	CCGG	1 cut(s)	69
BslI	CCNNNNNNNGG	2 cut(s)	68, 190
Bsp143I	GATC	5 cut(s)	150, 201, 248, 300, 319
BspHI	TCATGA	1 cut(s)	303
BspPI	GGATC	3 cut(s)	145, 256, 308
BspTI	CTTAAG	1 cut(s)	155
BsrDI	GCAATG	1 cut(s)	19
BsrFI	RCCGGY	1 cut(s)	68
BsrI	ACTGG	1 cut(s)	219
BssAI	RCCGGY	1 cut(s)	68
BssECI	CCNNGG	2 cut(s)	143, 184
BssMI	GATC	5 cut(s)	150, 201, 248, 300, 319
BssT1I	CCWWGG	1 cut(s)	143
Bst6I	CTCTTC	1 cut(s)	37
BstAFI	CTTAAG	1 cut(s)	155
BstC8I	GCNNGC	3 cut(s)	10, 70, 311
BstF5I	GGATG	1 cut(s)	72
BstKTI	GATC	5 cut(s)	153, 204, 251, 303, 322
BstMBI	GATC	5 cut(s)	150, 201, 248, 300, 319
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 23, 357, 366, 418
BstX2I	RGATCY	2 cut(s)	150, 201
BstXI	CCANNNNNNTGG	1 cut(s)	214
BstYI	RGATCY	2 cut(s)	150, 201
BtsCI	GGATG	1 cut(s)	72
Cac8I	GCNNGC	3 cut(s)	10, 70, 311
CciI	TCATGA	1 cut(s)	303
Cfr10I	RCCGGY	1 cut(s)	68
CviAII	CATG	1 cut(s)	304
DpnI	GATC	5 cut(s)	152, 203, 250, 302, 321
DpnII	GATC	5 cut(s)	150, 201, 248, 300, 319
Eam1104I	CTCTTC	1 cut(s)	37
EarI	CTCTTC	1 cut(s)	37
Eco130I	CCWWGG	1 cut(s)	143
Eco57I	CTGAAG	1 cut(s)	348
EcoT14I	CCWWGG	1 cut(s)	143
ErhI	CCWWGG	1 cut(s)	143
FaeI	CATG	1 cut(s)	307
FaiI	YATR	3 cut(s)	23, 305, 349
FatI	CATG	1 cut(s)	303
FbaI	TGATCA	1 cut(s)	319
FokI	GGATG	1 cut(s)	59
FspBI	CTAG	2 cut(s)	162, 401
HapII	CCGG	1 cut(s)	69
Hin1II	CATG	1 cut(s)	307
HinfI	GANTC	1 cut(s)	332
HpaII	CCGG	1 cut(s)	69
HphI	GGTGA	3 cut(s)	217, 229, 299
Hpy188III	TCNNGA	3 cut(s)	246, 260, 304
HpyAV	CCTTC	1 cut(s)	382
HpyCH4V	TGCA	2 cut(s)	167, 441
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 23, 357, 366, 418
Hsp92II	CATG	1 cut(s)	307
KroI	GCCGGC	1 cut(s)	68
KroNI	GCCGGC	1 cut(s)	70
Ksp22I	TGATCA	1 cut(s)	319
Kzo9I	GATC	5 cut(s)	150, 201, 248, 300, 319
LmnI	GCTCC	1 cut(s)	366
LpnPI	CCDG	7 cut(s)	82, 112, 200, 231, 270, 295, 339
LweI	GCATC	1 cut(s)	81
MaeI	CTAG	2 cut(s)	162, 401
MalI	GATC	5 cut(s)	152, 203, 250, 302, 321
MboI	GATC	5 cut(s)	150, 201, 248, 300, 319
MboII	GAAGA	4 cut(s)	50, 54, 160, 341
MflI	RGATCY	2 cut(s)	150, 201
MluCI	AATT	4 cut(s)	86, 170, 177, 220
MnlI	CCTC	2 cut(s)	179, 417
MroNI	GCCGGC	1 cut(s)	68
MseI	TTAA	3 cut(s)	156, 198, 372
MspCI	CTTAAG	1 cut(s)	155
MspI	CCGG	1 cut(s)	69
MwoI	GCNNNNNNNGC	5 cut(s)	14, 23, 357, 366, 418
NaeI	GCCGGC	1 cut(s)	70
NdeII	GATC	5 cut(s)	150, 201, 248, 300, 319
NgoMIV	GCCGGC	1 cut(s)	68
NlaIII	CATG	1 cut(s)	307
PagI	TCATGA	1 cut(s)	303
PdiI	GCCGGC	1 cut(s)	70
PfeI	GAWTC	1 cut(s)	332
PsuI	RGATCY	2 cut(s)	150, 201
SaqAI	TTAA	3 cut(s)	156, 198, 372
Sau3AI	GATC	5 cut(s)	150, 201, 248, 300, 319
SetI	ASST	6 cut(s)	125, 311, 362, 371, 400, 428
SfaNI	GCATC	1 cut(s)	81
SmlI	CTYRAG	3 cut(s)	155, 258, 407
SmoI	CTYRAG	3 cut(s)	155, 258, 407
Sse9I	AATT	4 cut(s)	86, 170, 177, 220
SspMI	CTAG	2 cut(s)	162, 401
StyI	CCWWGG	1 cut(s)	143
TasI	AATT	4 cut(s)	86, 170, 177, 220
TfiI	GAWTC	1 cut(s)	332
Tru1I	TTAA	3 cut(s)	156, 198, 372
Tru9I	TTAA	3 cut(s)	156, 198, 372
TspDTI	ATGAA	2 cut(s)	106, 390
Vha464I	CTTAAG	1 cut(s)	155
XapI	RAATTY	4 cut(s)	86, 170, 177, 220
XspI	CTAG	2 cut(s)	162, 401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.