Rw5G042260

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Forward (+)
74075967 .. 74077409
1443 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G042260.1

Sequence Viewer

Length: 1443 bp
ATGAAGAGAGCAGAACTAGTGTTCATCCCAGCACCAGGGGCCGGTCACCTCGTAGCAGCCTTGCAATTCGGAAAGCGTCTGCTTCAGCGAGATGATCGAATTTCAATCACAGTTCTTTCCATCAAATCAGCAGCCCCTTCACCTTTAGGTTCATACACAGAATCCCTTGTTGCTTCGGAATCCCGAATCCAACTCATTGATGTCCCTCAAGCAGAGCTGCCTCCATTAGAGTTTGCAAAGTCACCAGCTAAATTTTTCATTCTAAACATTGAGAACCATGTGCCTAATGTCAGGGAAGCCCTCACTAACTACGTTTCATCATTGCATTCTAAGCCCGACTCGGTTCCAATTGTTGGAGTGGTTCTTGATTTCTTCTGTGTCTCCATGATTGATGTGGTCAATGAACTCAATCTCCCTTCTTATCTTTTCATGACGAGCAATGCAGGGTATCTTTCTGTCATGTTCCACTTTCCGGCGCAGGATAGCCGGACCGGTGCGCCACCTAAAGACTCCGATCCTGATTGGTTAGTCCCAGGTATTGTCCCCCCAGTTCCTACTACAGTTTTGCCTGTGTCTATGACAGATGGTAGCTACTCTAGTTATCTTGGGATTGCTGCGAGATTTAGAGAGGCCAAAGGTATCATAGCAAATACTTGTGTTGAGTTAGAGGCACATGCTTTTAACTCGTTTTCAGAAGATCAAACTACGCCTCCGGTGTACCCAGTTGGGCCGGTGCTTGATCTCAACGATGGTCAGGCTCGGTCCAATTTAAACCAGGCGCAGCGTGACAGGATCATGAGCTGGCTTGATGATCAGCCTGAAGAATCTGTTGTGTTCTTATGCTTTGGAAGCTTGGGGAGCTTTAATGAAGCACAAGTGAAGGAGATAGCTCTGGGGCTTGAGCAGAGTGGGCAGAGGTTCTTGTGGTCTTTGCGTTTGACACCACCAAAAGGCAGCAAAACTTTGACTCCTATCGACTGCTCGAACCTTGAGGAAGTCTTGCCGGATGGGTTCTTGGAGAGGACTAGAGGAAAGGGACTGATATGCGGGTGGGCGCCGCAGGTGGAAGTCTTGTCCCACAAGGCAACCGGAGGCTTTGTGTCGCATTGTGGGTGGAACTCGATCTTGGAGAGCTTGTGGTACGGTGTGCCTATTGTGACATGGCCTATGTATGCCGAGCAACAGCTGAATGCGTTTCGAATGGTGAAGGAGTTGGGGTTGGGATTGGAGATGAGGTTGGATTACAAGAAAGGTGGTGAGGTTGTGAAGGCAGATGAGATAGGGAAGGCAGTGGTTAGTGTAATGGAGGACAGCGAGGTGAGGAAGAAGGTTAAAGAGATGGGGGTGGTGAGCAGAAAAGCTGTAGAGGACGGTGGGTCTTCCTCCGTTTCTCTTGGACGGTTTATTGAAGATGTGATGAGGAATCATTTTGGTTCTGATTAA

Protein Analysis

480

Amino Acids

52.57

Weight (kDa)

5.23

Isoelectric Point (pI)

43.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 269 - 406 5.2e-24 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1051
Acc36I ACCTGC 1 cut(s) 1051
AccB1I GGYRCC 1 cut(s) 1054
AccB7I CCANNNNNTGG 1 cut(s) 353
AciI CCGC 2 cut(s) 1047, 1058
AclWI GGATC 2 cut(s) 509, 800
AcsI RAATTY 2 cut(s) 99, 251
AcuI CTGAAG 2 cut(s) 68, 840
AcyI GRCGYC 1 cut(s) 1055
AfaI GTAC 2 cut(s) 719, 1142
AfiI CCNNNNNNNGG 5 cut(s) 35, 41, 353, 472, 950
AgeI ACCGGT 1 cut(s) 491
AgsI TTSAA 2 cut(s) 105, 1409
AhdI GACNNNNNGTC 1 cut(s) 1375
AhlI ACTAGT 1 cut(s) 16
AjnI CCWGG 3 cut(s) 34, 532, 774
AjuI GAANNNNNNNTTGG 2 cut(s) 1109, 1141
AloI GAACNNNNNNTCC 2 cut(s) 396, 428
Alw26I GTCTC 1 cut(s) 385
AlwI GGATC 2 cut(s) 509, 800
AoxI GGCC 4 cut(s) 39, 630, 728, 1163
ApeKI GCWGC 6 cut(s) 56, 131, 217, 614, 781, 954
ApoI RAATTY 2 cut(s) 99, 251
AsiGI ACCGGT 1 cut(s) 491
AspLEI GCGC 4 cut(s) 478, 499, 781, 1057
AspS9I GGNCC 4 cut(s) 39, 489, 728, 762
AsuHPI GGTGA 7 cut(s) 38, 132, 234, 1216, 1268, 1330, 1360
AsuII TTCGAA 1 cut(s) 1198
AvaII GGWCC 2 cut(s) 489, 762
BanI GGYRCC 1 cut(s) 1054
BbsI GAAGAC 1 cut(s) 1371
BbvI GCAGC 6 cut(s) 68, 143, 204, 601, 793, 966
BccI CCATC 5 cut(s) 128, 578, 743, 1001, 1333
BciT130I CCWGG 3 cut(s) 36, 534, 776
BclI TGATCA 1 cut(s) 811
BcoDI GTCTC 1 cut(s) 385
BcuI ACTAGT 1 cut(s) 16
BfaI CTAG 3 cut(s) 17, 597, 1026
BfmI CTRYAG 2 cut(s) 558, 1362
BfoI RGCGCY 1 cut(s) 1058
BfuAI ACCTGC 1 cut(s) 1051
BisI GCNGC 7 cut(s) 57, 132, 218, 615, 782, 955, 1058
BlsI GCNGC 7 cut(s) 58, 133, 219, 616, 783, 956, 1059
Bme1390I CCNGG 3 cut(s) 36, 534, 776
Bme18I GGWCC 2 cut(s) 489, 762
BmeRI GACNNNNNGTC 1 cut(s) 1375
BmgT120I GGNCC 4 cut(s) 39, 489, 728, 762
BmiI GGNNCC 3 cut(s) 40, 345, 1056
BmrFI CCNGG 3 cut(s) 36, 534, 776
BmrI ACTGGG 2 cut(s) 542, 716
BmuI ACTGGG 2 cut(s) 542, 716
BpiI GAAGAC 1 cut(s) 1371
Bpu14I TTCGAA 1 cut(s) 1198
BpuEI CTTGAG 3 cut(s) 192, 920, 1010
BsaHI GRCGYC 1 cut(s) 1055
BsaJI CCNNGG 2 cut(s) 35, 532
BsaWI WCCGGW 3 cut(s) 491, 712, 1088
Bsc4I CCNNNNNNNGG 5 cut(s) 35, 41, 353, 472, 950
Bse118I RCCGGY 3 cut(s) 41, 491, 730
Bse1I ACTGG 2 cut(s) 548, 722
Bse3DI GCAATG 2 cut(s) 320, 445
BseBI CCWGG 3 cut(s) 36, 534, 776
BseDI CCNNGG 2 cut(s) 35, 532
BseGI GGATG 2 cut(s) 24, 1012
BseLI CCNNNNNNNGG 5 cut(s) 35, 41, 353, 472, 950
BseMI GCAATG 2 cut(s) 320, 445
BseNI ACTGG 2 cut(s) 548, 722
BseXI GCAGC 6 cut(s) 68, 143, 204, 601, 793, 966
BseYI CCCAGC 1 cut(s) 28
BshFI GGCC 4 cut(s) 41, 632, 730, 1165
BshNI GGYRCC 1 cut(s) 1054
BshTI ACCGGT 1 cut(s) 491
BsiSI CCGG 8 cut(s) 42, 473, 487, 492, 713, 731, 1004, 1089
BslFI GGGAC 5 cut(s) 188, 515, 527, 1050, 1060
BslI CCNNNNNNNGG 5 cut(s) 35, 41, 353, 472, 950
BsmAI GTCTC 1 cut(s) 385
BsmFI GGGAC 5 cut(s) 188, 515, 527, 1050, 1060
BsmI GAATGC 2 cut(s) 325, 1195
BsnI GGCC 4 cut(s) 41, 632, 730, 1165
Bsp119I TTCGAA 1 cut(s) 1198
Bsp143I GATC 7 cut(s) 94, 514, 697, 739, 792, 811, 1122
BspACI CCGC 2 cut(s) 1047, 1058
BspANI GGCC 4 cut(s) 41, 632, 730, 1165
BspHI TCATGA 2 cut(s) 429, 795
BspLI GGNNCC 3 cut(s) 40, 345, 1056
BspMI ACCTGC 1 cut(s) 1051
BspPI GGATC 2 cut(s) 509, 800
BspT104I TTCGAA 1 cut(s) 1198
BspT107I GGYRCC 1 cut(s) 1054
BsrDI GCAATG 2 cut(s) 320, 445
BsrFI RCCGGY 3 cut(s) 41, 491, 730
BsrI ACTGG 2 cut(s) 548, 722
BssAI RCCGGY 3 cut(s) 41, 491, 730
BssECI CCNNGG 2 cut(s) 35, 532
BssMI GATC 7 cut(s) 94, 514, 697, 739, 792, 811, 1122
BssNI GRCGYC 1 cut(s) 1055
Bst2UI CCWGG 3 cut(s) 36, 534, 776
Bst4CI ACNGT 5 cut(s) 112, 562, 1145, 1373, 1401
BstACI GRCGYC 1 cut(s) 1055
BstBI TTCGAA 1 cut(s) 1198
BstC8I GCNNGC 1 cut(s) 803
BstDEI CTNAG 1 cut(s) 330
BstEII GGTNACC 1 cut(s) 44
BstF5I GGATG 2 cut(s) 24, 1012
BstH2I RGCGCY 1 cut(s) 1058
BstHHI GCGC 4 cut(s) 478, 499, 781, 1057
BstKTI GATC 7 cut(s) 97, 517, 700, 742, 795, 814, 1125
BstMAI GTCTC 1 cut(s) 385
BstMBI GATC 7 cut(s) 94, 514, 697, 739, 792, 811, 1122
BstMWI GCNNNNNNNGC 5 cut(s) 38, 331, 849, 858, 910
BstNI CCWGG 3 cut(s) 36, 534, 776
BstNSI RCATGY 1 cut(s) 677
BstPI GGTNACC 1 cut(s) 44
BstSCI CCNGG 3 cut(s) 34, 532, 774
BstSFI CTRYAG 2 cut(s) 558, 1362
BstV1I GCAGC 6 cut(s) 68, 143, 204, 601, 793, 966
BstV2I GAAGAC 1 cut(s) 1371
BsuRI GGCC 4 cut(s) 41, 632, 730, 1165
BtsCI GGATG 2 cut(s) 24, 1012
BtsI GCAGTG 1 cut(s) 1296
BtsIMutI CAGTG 1 cut(s) 1296
BveI ACCTGC 1 cut(s) 1051
Cac8I GCNNGC 1 cut(s) 803
CciI TCATGA 2 cut(s) 429, 795
CfoI GCGC 4 cut(s) 478, 499, 781, 1057
Cfr10I RCCGGY 3 cut(s) 41, 491, 730
Cfr13I GGNCC 4 cut(s) 39, 489, 728, 762
CpoI CGGWCCG 1 cut(s) 489
CseI GACGC 1 cut(s) 65
Csp6I GTAC 2 cut(s) 718, 1141
CspAI ACCGGT 1 cut(s) 491
CspCI CAANNNNNGTGG 2 cut(s) 1234, 1269
CspI CGGWCCG 1 cut(s) 489
CviAII CATG 7 cut(s) 278, 385, 430, 460, 674, 796, 1161
CviQI GTAC 2 cut(s) 718, 1141
DdeI CTNAG 1 cut(s) 330
DinI GGCGCC 1 cut(s) 1056
DpnI GATC 7 cut(s) 96, 516, 699, 741, 794, 813, 1124
DpnII GATC 7 cut(s) 94, 514, 697, 739, 792, 811, 1122
DraI TTTAAA 1 cut(s) 771
DriI GACNNNNNGTC 1 cut(s) 1375
Eam1105I GACNNNNNGTC 1 cut(s) 1375
Eco47I GGWCC 2 cut(s) 489, 762
Eco57I CTGAAG 2 cut(s) 68, 840
Eco91I GGTNACC 1 cut(s) 44
EcoO65I GGTNACC 1 cut(s) 44
EcoRII CCWGG 3 cut(s) 34, 532, 774
EgeI GGCGCC 1 cut(s) 1056
EheI GGCGCC 1 cut(s) 1056
FaeI CATG 7 cut(s) 281, 388, 433, 463, 677, 799, 1164
FaqI GGGAC 5 cut(s) 188, 515, 527, 1050, 1060
FatI CATG 7 cut(s) 277, 384, 429, 459, 673, 795, 1160
FauI CCCGC 1 cut(s) 1040
FbaI TGATCA 1 cut(s) 811
Fnu4HI GCNGC 7 cut(s) 57, 132, 218, 615, 782, 955, 1058
FokI GGATG 2 cut(s) 11, 1019
Fsp4HI GCNGC 7 cut(s) 57, 132, 218, 615, 782, 955, 1058
FspBI CTAG 3 cut(s) 17, 597, 1026
GlaI GCGC 4 cut(s) 477, 498, 780, 1056
GluI GCNGC 7 cut(s) 57, 132, 218, 615, 782, 955, 1058
GsaI CCCAGC 1 cut(s) 32
HaeII RGCGCY 1 cut(s) 1058
HaeIII GGCC 4 cut(s) 41, 632, 730, 1165
HapII CCGG 8 cut(s) 42, 473, 487, 492, 713, 731, 1004, 1089
HgaI GACGC 1 cut(s) 65
HhaI GCGC 4 cut(s) 478, 499, 781, 1057
Hin1I GRCGYC 1 cut(s) 1055
Hin1II CATG 7 cut(s) 281, 388, 433, 463, 677, 799, 1164
Hin6I GCGC 4 cut(s) 476, 497, 779, 1055
HinP1I GCGC 4 cut(s) 476, 497, 779, 1055
HindIII AAGCTT 1 cut(s) 850
HinfI GANTC 8 cut(s) 161, 179, 186, 338, 509, 824, 967, 1423
HpaII CCGG 8 cut(s) 42, 473, 487, 492, 713, 731, 1004, 1089
HphI GGTGA 7 cut(s) 38, 132, 234, 1216, 1268, 1330, 1360
Hpy166II GTNNAC 1 cut(s) 718
Hpy188I TCNGA 5 cut(s) 71, 178, 514, 694, 1438
Hpy188III TCNNGA 5 cut(s) 183, 365, 430, 518, 796
Hpy8I GTNNAC 1 cut(s) 718
HpyAV CCTTC 7 cut(s) 147, 426, 874, 1201, 1261, 1279, 1321
HpyCH4III ACNGT 5 cut(s) 112, 562, 1145, 1373, 1401
HpyCH4IV ACGT 1 cut(s) 312
HpyCH4V TGCA 4 cut(s) 64, 236, 325, 443
HpyF10VI GCNNNNNNNGC 5 cut(s) 38, 331, 849, 858, 910
HpyF3I CTNAG 1 cut(s) 330
HpySE526I ACGT 1 cut(s) 312
Hsp92I GRCGYC 1 cut(s) 1055
Hsp92II CATG 7 cut(s) 281, 388, 433, 463, 677, 799, 1164
HspAI GCGC 4 cut(s) 476, 497, 779, 1055
KasI GGCGCC 1 cut(s) 1054
Ksp22I TGATCA 1 cut(s) 811
Kzo9I GATC 7 cut(s) 94, 514, 697, 739, 792, 811, 1122
LmnI GCTCC 1 cut(s) 858
Lsp1109I GCAGC 6 cut(s) 68, 143, 204, 601, 793, 966
MaeI CTAG 3 cut(s) 17, 597, 1026
MaeII ACGT 1 cut(s) 312
MaeIII GTNAC 4 cut(s) 44, 240, 785, 1156
MalI GATC 7 cut(s) 96, 516, 699, 741, 794, 813, 1124
MboI GATC 7 cut(s) 94, 514, 697, 739, 792, 811, 1122
MboII GAAGA 7 cut(s) 16, 364, 707, 833, 1336, 1371, 1421
MfeI CAATTG 1 cut(s) 348
MluCI AATT 5 cut(s) 65, 99, 251, 348, 766
Mly113I GGCGCC 1 cut(s) 1055
MlyI GAGTC 3 cut(s) 332, 503, 961
MmeI TCCRAC 3 cut(s) 214, 334, 1218
MseI TTAA 5 cut(s) 681, 770, 864, 1332, 1441
MspA1I CMGCKG 1 cut(s) 1186
MspI CCGG 8 cut(s) 42, 473, 487, 492, 713, 731, 1004, 1089
MspR9I CCNGG 3 cut(s) 36, 534, 776
MunI CAATTG 1 cut(s) 348
Mva1269I GAATGC 2 cut(s) 325, 1195
MvaI CCWGG 3 cut(s) 36, 534, 776
MwoI GCNNNNNNNGC 5 cut(s) 38, 331, 849, 858, 910
NarI GGCGCC 1 cut(s) 1055
NdeII GATC 7 cut(s) 94, 514, 697, 739, 792, 811, 1122
NlaIII CATG 7 cut(s) 281, 388, 433, 463, 677, 799, 1164
NlaIV GGNNCC 3 cut(s) 40, 345, 1056
NmeAIII GCCGAG 1 cut(s) 1201
NmuCI GTSAC 4 cut(s) 44, 240, 785, 1156
NspI RCATGY 1 cut(s) 677
NspV TTCGAA 1 cut(s) 1198
PagI TCATGA 2 cut(s) 429, 795
PaqCI CACCTGC 1 cut(s) 1051
PctI GAATGC 2 cut(s) 325, 1195
PfeI GAWTC 5 cut(s) 161, 179, 186, 824, 1423
PflMI CCANNNNNTGG 1 cut(s) 353
PinAI ACCGGT 1 cut(s) 491
PkrI GCNGC 7 cut(s) 58, 133, 219, 616, 783, 956, 1059
PleI GAGTC 3 cut(s) 332, 503, 961
PluTI GGCGCC 1 cut(s) 1058
PpsI GAGTC 3 cut(s) 332, 503, 961
Psp6I CCWGG 3 cut(s) 34, 532, 774
PspEI GGTNACC 1 cut(s) 44
PspFI CCCAGC 1 cut(s) 28
PspGI CCWGG 3 cut(s) 34, 532, 774
PspN4I GGNNCC 3 cut(s) 40, 345, 1056
PspPI GGNCC 4 cut(s) 39, 489, 728, 762
PvuII CAGCTG 1 cut(s) 1186
RsaI GTAC 2 cut(s) 719, 1142
RsaNI GTAC 2 cut(s) 718, 1141
Rsr2I CGGWCCG 1 cut(s) 489
RsrII CGGWCCG 1 cut(s) 489
SaqAI TTAA 5 cut(s) 681, 770, 864, 1332, 1441
SatI GCNGC 7 cut(s) 57, 132, 218, 615, 782, 955, 1058
Sau3AI GATC 7 cut(s) 94, 514, 697, 739, 792, 811, 1122
Sau96I GGNCC 4 cut(s) 39, 489, 728, 762
SchI GAGTC 3 cut(s) 332, 503, 961
ScrFI CCNGG 3 cut(s) 36, 534, 776
SfcI CTRYAG 2 cut(s) 558, 1362
SfoI GGCGCC 1 cut(s) 1056
SfuI TTCGAA 1 cut(s) 1198
SinI GGWCC 2 cut(s) 489, 762
SmlI CTYRAG 3 cut(s) 207, 899, 989
SmoI CTYRAG 3 cut(s) 207, 899, 989
SpeI ACTAGT 1 cut(s) 16
Sse9I AATT 5 cut(s) 65, 99, 251, 348, 766
SsiI CCGC 2 cut(s) 1047, 1058
SspDI GGCGCC 1 cut(s) 1054
SspMI CTAG 3 cut(s) 17, 597, 1026
StyD4I CCNGG 3 cut(s) 34, 532, 774
TaaI ACNGT 5 cut(s) 112, 562, 1145, 1373, 1401
TaiI ACGT 1 cut(s) 315
TaqI TCGA 5 cut(s) 97, 975, 983, 1121, 1198
TaqII GACCGA 1 cut(s) 750
TasI AATT 5 cut(s) 65, 99, 251, 348, 766
TauI GCSGC 1 cut(s) 1060
TfiI GAWTC 5 cut(s) 161, 179, 186, 824, 1423
Tru1I TTAA 5 cut(s) 681, 770, 864, 1332, 1441
Tru9I TTAA 5 cut(s) 681, 770, 864, 1332, 1441
TscAI CASTG 1 cut(s) 1296
TseFI GTSAC 4 cut(s) 44, 240, 785, 1156
TseI GCWGC 6 cut(s) 56, 131, 217, 614, 781, 954
Tsp45I GTSAC 4 cut(s) 44, 240, 785, 1156
TspDTI ATGAA 8 cut(s) 13, 17, 141, 247, 306, 417, 418, 882
TspGWI ACGGA 1 cut(s) 1375
TspRI CASTG 1 cut(s) 1296
Van91I CCANNNNNTGG 1 cut(s) 353
VpaK11BI GGWCC 2 cut(s) 489, 762
XapI RAATTY 2 cut(s) 99, 251
XceI RCATGY 1 cut(s) 677
XcmI CCANNNNNNNNNTGG 1 cut(s) 391
XspI CTAG 3 cut(s) 17, 597, 1026
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.