Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002597

Physical Location & Seq

Genomic Coordinates Reverse (-)

83232670 .. 83234920

Gene Structure 2251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022423

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGGAAGCTCATTACCAACCACACCCAGCCCACTACCAACCACACCTAGCCCAAGAAGTTCAAGCTCGCCTGTAGCTCCAACGGCGCATTCCACCCCCGGCCACCATCTGGGAAGCTCCGCTACATCTGCGGCGAGACCCGGATCATCTTCATCGACCAGACCATTGCATTCTCCAAGCGAAGATTTCCTATCTCTCCCCCAACTCCCTGACTCCGGATCGAGCTCCTATGCCGTCCACCCCTCAACTCGGACGACGACGTCCGCCGCATGCTTGGGGAGCTTTAATGAAGCACAAGTGAAGGAGATAGCTCTGGGGCTTGAGCGGAGTGGGCAGAGGTTCTTGTGGTCTTTTCGTTTGACACCACCAATAGGCAGCAAAACTCTGACTCCTATCGACTGCTCGAACCTTGAGGAAGTCTTGCCGGATGGGTTATTGGAGAGGACTAGAGTAAAGGGTCTGATATGCTGGTGGGGGCCGCAGCTGGAAGTATATGTATATACTAGAGGAAAGGGAGTTAGGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0008150 GO:0008152 GO:0008194 GO:0009414 GO:0009415 GO:0009628 GO:0009687 GO:0009819 GO:0009987 GO:0010029 GO:0010030 GO:0010035 GO:0010294 GO:0016740 GO:0016757 GO:0016758 GO:0019752 GO:0032787 GO:0035251 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048518 GO:0048580 GO:0048582 GO:0048878 GO:0050789 GO:0050793 GO:0050801 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0055081 GO:0055088 GO:0065007 GO:0065008 GO:0071704 GO:0080043 GO:0080044 GO:0080045 GO:1900140 GO:1901615 GO:1901700 GO:1902265 GO:1902644 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

176

Amino Acids

18.54

Weight (kDa)

8.56

Isoelectric Point (pI)

60.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07250 AT1G07260 AT2G29710 AT2G29730 AT2G29740 AT2G29750
fragaria_vesca	FvH4_3g38400
malus_domestica	MD11G1076200.v1.1 MD11G1076600.v1.1 MD11G1076800.v1.1
prunus_persica	Prupe.6G058900_v2.0.a1 Prupe.6G059000_v2.0.a1
pyrus_communis	pycom11g06400 pycom11g06420 pycom11g06440 pycom11g06460 pycom11g06470
rosa_chinensis	RchiOBHm_Chr5g0069021
rosa_laevigata	RLG00000020959 RLG00000022423 RLG00000036031
rosa_multiflora	Rmu_sc0000853.1_g000006 Rmu_sc0000853.1_g000007 Rmu_sc0000936.1_g000005 Rmu_sc0001913.1_g000022 Rmu_sc0003814.1_g000006 Rmu_sc0006282.1_g000037
rosa_roxburghii	Rroxscaffold_1G00004260 Rroxscaffold_1G00011700
rosa_rugosa	Rorug05G0395700 Rorug07G0215100
rosa_samantha	Rh1BG061100 Rh5BG471600 Rh5CG494000 Rh5DG484200 Rh6CG276400 Rh7BG348600
rosa_wichuraiana	Rw0G006100 Rw2G043210 Rw5G042260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	259
AatII	GACGTC	1 cut(s)	263
AccB7I	CCANNNNNTGG	1 cut(s)	109
AccBSI	CCGCTC	1 cut(s)	325
AccIII	TCCGGA	1 cut(s)	215
AciI	CCGC	6 cut(s)	120, 131, 264, 267, 325, 479
AclWI	GGATC	2 cut(s)	151, 226
AcoI	YGGCCR	1 cut(s)	100
AcyI	GRCGYC	1 cut(s)	260
AfiI	CCNNNNNNNGG	4 cut(s)	109, 215, 249, 371
AgsI	TTSAA	1 cut(s)	63
AjuI	GAANNNNNNNTTGG	2 cut(s)	73, 105
AluBI	AGCT	8 cut(s)	9, 66, 77, 117, 225, 282, 311, 484
AluI	AGCT	8 cut(s)	9, 66, 77, 117, 225, 282, 311, 484
Alw21I	GWGCWC	1 cut(s)	227
Alw26I	GTCTC	1 cut(s)	130
AlwI	GGATC	2 cut(s)	151, 226
Aor13HI	TCCGGA	1 cut(s)	215
AoxI	GGCC	2 cut(s)	100, 476
ApeKI	GCWGC	2 cut(s)	375, 481
AspLEI	GCGC	1 cut(s)	88
AspS9I	GGNCC	1 cut(s)	476
AsuC2I	CCSGG	2 cut(s)	99, 141
BanII	GRGCYC	1 cut(s)	227
BarI	GAAGNNNNNNTAC	2 cut(s)	106, 138
Bbv12I	GWGCWC	1 cut(s)	227
BbvI	GCAGC	2 cut(s)	387, 493
BccI	CCATC	2 cut(s)	114, 422
BceAI	ACGGC	2 cut(s)	99, 218
BcnI	CCSGG	2 cut(s)	99, 141
BcoDI	GTCTC	1 cut(s)	130
BfaI	CTAG	3 cut(s)	48, 447, 504
BfmI	CTRYAG	1 cut(s)	72
BisI	GCNGC	5 cut(s)	132, 267, 376, 479, 482
BlsI	GCNGC	5 cut(s)	133, 268, 377, 480, 483
Bme1390I	CCNGG	2 cut(s)	99, 141
BmgT120I	GGNCC	1 cut(s)	476
BmiI	GGNNCC	1 cut(s)	477
BmrFI	CCNGG	2 cut(s)	99, 141
BpuEI	CTTGAG	2 cut(s)	341, 431
BpuMI	CCSGG	2 cut(s)	99, 141
BsaHI	GRCGYC	1 cut(s)	260
BsaI	GGTCTC	1 cut(s)	130
BsaJI	CCNNGG	1 cut(s)	97
BsaWI	WCCGGW	1 cut(s)	215
BsaXI	ACNNNNNCTCC	2 cut(s)	373, 403
Bsc4I	CCNNNNNNNGG	4 cut(s)	109, 215, 249, 371
Bse3DI	GCAATG	1 cut(s)	164
BseAI	TCCGGA	1 cut(s)	215
BseDI	CCNNGG	1 cut(s)	97
BseGI	GGATG	1 cut(s)	433
BseLI	CCNNNNNNNGG	4 cut(s)	109, 215, 249, 371
BseMI	GCAATG	1 cut(s)	164
BseXI	GCAGC	2 cut(s)	387, 493
BseYI	CCCAGC	1 cut(s)	26
BshFI	GGCC	2 cut(s)	102, 478
BsiHKAI	GWGCWC	1 cut(s)	227
BsiSI	CCGG	4 cut(s)	99, 141, 216, 425
BslI	CCNNNNNNNGG	4 cut(s)	109, 215, 249, 371
BsmAI	GTCTC	1 cut(s)	130
BsmI	GAATGC	2 cut(s)	88, 169
BsnI	GGCC	2 cut(s)	102, 478
Bso31I	GGTCTC	1 cut(s)	130
Bsp1286I	GDGCHC	1 cut(s)	227
Bsp13I	TCCGGA	1 cut(s)	215
Bsp143I	GATC	2 cut(s)	143, 218
BspACI	CCGC	6 cut(s)	120, 131, 264, 267, 325, 479
BspANI	GGCC	2 cut(s)	102, 478
BspEI	TCCGGA	1 cut(s)	215
BspLI	GGNNCC	1 cut(s)	477
BspPI	GGATC	2 cut(s)	151, 226
BspTNI	GGTCTC	1 cut(s)	130
BsrBI	CCGCTC	1 cut(s)	325
BsrDI	GCAATG	1 cut(s)	164
BssECI	CCNNGG	1 cut(s)	97
BssMI	GATC	2 cut(s)	143, 218
BssNI	GRCGYC	1 cut(s)	260
BstACI	GRCGYC	1 cut(s)	260
BstC8I	GCNNGC	2 cut(s)	68, 271
BstF5I	GGATG	1 cut(s)	433
BstHHI	GCGC	1 cut(s)	88
BstKTI	GATC	2 cut(s)	146, 221
BstMAI	GTCTC	1 cut(s)	130
BstMBI	GATC	2 cut(s)	143, 218
BstMWI	GCNNNNNNNGC	4 cut(s)	83, 128, 279, 331
BstNSI	RCATGY	1 cut(s)	273
BstSCI	CCNGG	2 cut(s)	97, 139
BstSFI	CTRYAG	1 cut(s)	72
BstV1I	GCAGC	2 cut(s)	387, 493
BsuRI	GGCC	2 cut(s)	102, 478
BtsCI	GGATG	1 cut(s)	433
Cac8I	GCNNGC	2 cut(s)	68, 271
CfoI	GCGC	1 cut(s)	88
Cfr13I	GGNCC	1 cut(s)	476
CviAII	CATG	1 cut(s)	270
DpnI	GATC	2 cut(s)	145, 220
DpnII	GATC	2 cut(s)	143, 218
DrdI	GACNNNNNNGTC	1 cut(s)	259
DseDI	GACNNNNNNGTC	1 cut(s)	259
EaeI	YGGCCR	1 cut(s)	100
EciI	GGCGGA	1 cut(s)	253
Ecl136II	GAGCTC	1 cut(s)	225
Eco24I	GRGCYC	1 cut(s)	227
Eco31I	GGTCTC	1 cut(s)	130
Eco53kI	GAGCTC	1 cut(s)	225
EcoICRI	GAGCTC	1 cut(s)	225
EcoT38I	GRGCYC	1 cut(s)	227
FaeI	CATG	1 cut(s)	273
FaiI	YATR	7 cut(s)	231, 271, 466, 493, 495, 499, 501
FatI	CATG	1 cut(s)	269
Fnu4HI	GCNGC	5 cut(s)	132, 267, 376, 479, 482
FokI	GGATG	1 cut(s)	440
FriOI	GRGCYC	1 cut(s)	227
Fsp4HI	GCNGC	5 cut(s)	132, 267, 376, 479, 482
FspBI	CTAG	3 cut(s)	48, 447, 504
GlaI	GCGC	1 cut(s)	87
GluI	GCNGC	5 cut(s)	132, 267, 376, 479, 482
GsaI	CCCAGC	1 cut(s)	30
HaeIII	GGCC	2 cut(s)	102, 478
HapII	CCGG	4 cut(s)	99, 141, 216, 425
HhaI	GCGC	1 cut(s)	88
Hin1I	GRCGYC	1 cut(s)	260
Hin1II	CATG	1 cut(s)	273
Hin6I	GCGC	1 cut(s)	86
HinP1I	GCGC	1 cut(s)	86
HinfI	GANTC	2 cut(s)	212, 388
HpaII	CCGG	4 cut(s)	99, 141, 216, 425
Hpy166II	GTNNAC	1 cut(s)	238
Hpy188I	TCNGA	3 cut(s)	252, 387, 462
Hpy188III	TCNNGA	1 cut(s)	216
Hpy8I	GTNNAC	1 cut(s)	238
Hpy99I	CGWCG	2 cut(s)	259, 262
HpyAV	CCTTC	1 cut(s)	295
HpyCH4IV	ACGT	1 cut(s)	260
HpyCH4V	TGCA	1 cut(s)	169
HpyF10VI	GCNNNNNNNGC	4 cut(s)	83, 128, 279, 331
HpySE526I	ACGT	1 cut(s)	260
Hsp92I	GRCGYC	1 cut(s)	260
Hsp92II	CATG	1 cut(s)	273
HspAI	GCGC	1 cut(s)	86
Kpn2I	TCCGGA	1 cut(s)	215
Kzo9I	GATC	2 cut(s)	143, 218
LmnI	GCTCC	4 cut(s)	82, 122, 230, 279
Lsp1109I	GCAGC	2 cut(s)	387, 493
MaeI	CTAG	3 cut(s)	48, 447, 504
MaeII	ACGT	1 cut(s)	260
MalI	GATC	2 cut(s)	145, 220
MbiI	CCGCTC	1 cut(s)	325
MboI	GATC	2 cut(s)	143, 218
MboII	GAAGA	2 cut(s)	141, 194
MhlI	GDGCHC	1 cut(s)	227
MlyI	GAGTC	2 cut(s)	206, 382
MmeI	TCCRAC	1 cut(s)	104
MnlI	CCTC	5 cut(s)	253, 330, 406, 435, 500
MroI	TCCGGA	1 cut(s)	215
MseI	TTAA	1 cut(s)	285
MspA1I	CMGCKG	1 cut(s)	484
MspI	CCGG	4 cut(s)	99, 141, 216, 425
MspR9I	CCNGG	2 cut(s)	99, 141
Mva1269I	GAATGC	2 cut(s)	88, 169
MwoI	GCNNNNNNNGC	4 cut(s)	83, 128, 279, 331
NciI	CCSGG	2 cut(s)	99, 141
NdeII	GATC	2 cut(s)	143, 218
NlaIII	CATG	1 cut(s)	273
NlaIV	GGNNCC	1 cut(s)	477
NspI	RCATGY	1 cut(s)	273
PaeI	GCATGC	1 cut(s)	273
PctI	GAATGC	2 cut(s)	88, 169
PflFI	GACNNNGTC	1 cut(s)	259
PflMI	CCANNNNNTGG	1 cut(s)	109
PkrI	GCNGC	5 cut(s)	133, 268, 377, 480, 483
PleI	GAGTC	2 cut(s)	206, 382
PpsI	GAGTC	2 cut(s)	206, 382
Psp124BI	GAGCTC	1 cut(s)	227
PspFI	CCCAGC	1 cut(s)	26
PspN4I	GGNNCC	1 cut(s)	477
PspPI	GGNCC	1 cut(s)	476
PsyI	GACNNNGTC	1 cut(s)	259
PvuII	CAGCTG	1 cut(s)	484
SacI	GAGCTC	1 cut(s)	227
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	5 cut(s)	132, 267, 376, 479, 482
Sau3AI	GATC	2 cut(s)	143, 218
Sau96I	GGNCC	1 cut(s)	476
SchI	GAGTC	2 cut(s)	206, 382
ScrFI	CCNGG	2 cut(s)	99, 141
SduI	GDGCHC	1 cut(s)	227
SfcI	CTRYAG	1 cut(s)	72
SmlI	CTYRAG	2 cut(s)	320, 410
SmoI	CTYRAG	2 cut(s)	320, 410
SphI	GCATGC	1 cut(s)	273
SsiI	CCGC	6 cut(s)	120, 131, 264, 267, 325, 479
SspMI	CTAG	3 cut(s)	48, 447, 504
SstI	GAGCTC	1 cut(s)	227
StyD4I	CCNGG	2 cut(s)	97, 139
TaiI	ACGT	1 cut(s)	263
TaqI	TCGA	4 cut(s)	155, 221, 396, 404
TauI	GCSGC	3 cut(s)	134, 269, 481
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TseI	GCWGC	2 cut(s)	375, 481
TspDTI	ATGAA	2 cut(s)	141, 303
Tth111I	GACNNNGTC	1 cut(s)	259
Van91I	CCANNNNNTGG	1 cut(s)	109
XceI	RCATGY	1 cut(s)	273
XspI	CTAG	3 cut(s)	48, 447, 504
ZraI	GACGTC	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.