Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000853.1

Orthogroup ID

OG0002597

Physical Location & Seq

Genomic Coordinates Forward (+)

18536 .. 19183

Gene Structure 648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000853.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

atgagctggcttgatgatcagcctgaagaatctgttgtgttcttatgctttggaagcttggggagctttaatgaagcacaagtgaaggagatagctctggggcttgagcagagtgggcagaggttcttgtggtctttgcgtttgacaccaccaaaaggcagcaaaacttttactcctatcgactgctcgaaccttgaggaagtcttgccggatgggttcttggagaggactagaggaaagggactgatatgcgggtgggcgccgcaggtggaaatcctgtcccacaaggcaaccggaggctttgtgtcgcattgtgggtggaactcgatcttggagatcttgtggtatggtgtgcctattgtgacatggcctatgtatgccgagcaacagctgaatgcgtttcgaatggtgaaggagtggggattgggattggagatgaggttggattacaagaaaggtggtgaggttgtgaaggcagatgagatagggaaggcagtggttagtgtaatggaggacagcgagatgaggaagaaggttaaagagatgggggtggtgagcagaaaagctgtagaggacggtgggtcttcctccgtttctcttggacggtttattgaagatgtgatgaggaatcattttggttctgattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0008150 GO:0008152 GO:0008194 GO:0009414 GO:0009415 GO:0009628 GO:0009687 GO:0009819 GO:0009987 GO:0010029 GO:0010030 GO:0010035 GO:0010294 GO:0016740 GO:0016757 GO:0016758 GO:0019752 GO:0032787 GO:0035251 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048518 GO:0048580 GO:0048582 GO:0048878 GO:0050789 GO:0050793 GO:0050801 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0055081 GO:0055088 GO:0065007 GO:0065008 GO:0071704 GO:0080043 GO:0080044 GO:0080045 GO:1900140 GO:1901615 GO:1901700 GO:1902265 GO:1902644 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

215

Amino Acids

23.97

Weight (kDa)

5.25

Isoelectric Point (pI)

42.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07250 AT1G07260 AT2G29710 AT2G29730 AT2G29740 AT2G29750
fragaria_vesca	FvH4_3g38400
malus_domestica	MD11G1076200.v1.1 MD11G1076600.v1.1 MD11G1076800.v1.1
prunus_persica	Prupe.6G058900_v2.0.a1 Prupe.6G059000_v2.0.a1
pyrus_communis	pycom11g06400 pycom11g06420 pycom11g06440 pycom11g06460 pycom11g06470
rosa_chinensis	RchiOBHm_Chr5g0069021
rosa_laevigata	RLG00000020959 RLG00000022423 RLG00000036031
rosa_multiflora	Rmu_sc0000853.1_g000006 Rmu_sc0000853.1_g000007 Rmu_sc0000936.1_g000005 Rmu_sc0001913.1_g000022 Rmu_sc0003814.1_g000006 Rmu_sc0006282.1_g000037
rosa_roxburghii	Rroxscaffold_1G00004260 Rroxscaffold_1G00011700
rosa_rugosa	Rorug05G0395700 Rorug07G0215100
rosa_samantha	Rh1BG061100 Rh5BG471600 Rh5CG494000 Rh5DG484200 Rh6CG276400 Rh7BG348600
rosa_wichuraiana	Rw0G006100 Rw2G043210 Rw5G042260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	256
Acc36I	ACCTGC	1 cut(s)	256
AccB1I	GGYRCC	1 cut(s)	259
AciI	CCGC	2 cut(s)	252, 263
AcuI	CTGAAG	1 cut(s)	45
AcyI	GRCGYC	1 cut(s)	260
AfiI	CCNNNNNNNGG	1 cut(s)	155
AgsI	TTSAA	1 cut(s)	614
AhdI	GACNNNNNGTC	1 cut(s)	580
AjuI	GAANNNNNNNTTGG	2 cut(s)	314, 346
AluBI	AGCT	6 cut(s)	6, 57, 66, 95, 391, 566
AluI	AGCT	6 cut(s)	6, 57, 66, 95, 391, 566
AoxI	GGCC	1 cut(s)	368
ApeKI	GCWGC	1 cut(s)	159
AspLEI	GCGC	1 cut(s)	262
AsuHPI	GGTGA	3 cut(s)	421, 473, 565
AsuII	TTCGAA	1 cut(s)	403
BanI	GGYRCC	1 cut(s)	259
BbsI	GAAGAC	1 cut(s)	576
BbvI	GCAGC	1 cut(s)	171
BccI	CCATC	2 cut(s)	206, 538
BclI	TGATCA	1 cut(s)	16
BfaI	CTAG	1 cut(s)	231
BfmI	CTRYAG	1 cut(s)	567
BfoI	RGCGCY	1 cut(s)	263
BfuAI	ACCTGC	1 cut(s)	256
BglII	AGATCT	1 cut(s)	336
BisI	GCNGC	2 cut(s)	160, 263
BlsI	GCNGC	2 cut(s)	161, 264
BmeRI	GACNNNNNGTC	1 cut(s)	580
BmiI	GGNNCC	1 cut(s)	261
BpiI	GAAGAC	1 cut(s)	576
Bpu14I	TTCGAA	1 cut(s)	403
BpuEI	CTTGAG	2 cut(s)	125, 215
BsaHI	GRCGYC	1 cut(s)	260
BsaWI	WCCGGW	1 cut(s)	293
BsaXI	ACNNNNNCTCC	8 cut(s)	157, 187, 288, 318, 326, 356, 425, 455
Bsc4I	CCNNNNNNNGG	1 cut(s)	155
BseGI	GGATG	1 cut(s)	217
BseLI	CCNNNNNNNGG	1 cut(s)	155
BseXI	GCAGC	1 cut(s)	171
BshFI	GGCC	1 cut(s)	370
BshNI	GGYRCC	1 cut(s)	259
BsiSI	CCGG	2 cut(s)	209, 294
BslFI	GGGAC	2 cut(s)	255, 265
BslI	CCNNNNNNNGG	1 cut(s)	155
BsmFI	GGGAC	2 cut(s)	255, 265
BsmI	GAATGC	1 cut(s)	400
BsnI	GGCC	1 cut(s)	370
Bsp119I	TTCGAA	1 cut(s)	403
Bsp143I	GATC	3 cut(s)	16, 327, 336
BspACI	CCGC	2 cut(s)	252, 263
BspANI	GGCC	1 cut(s)	370
BspLI	GGNNCC	1 cut(s)	261
BspMI	ACCTGC	1 cut(s)	256
BspT104I	TTCGAA	1 cut(s)	403
BspT107I	GGYRCC	1 cut(s)	259
BssMI	GATC	3 cut(s)	16, 327, 336
BssNI	GRCGYC	1 cut(s)	260
Bst4CI	ACNGT	2 cut(s)	578, 606
BstACI	GRCGYC	1 cut(s)	260
BstBI	TTCGAA	1 cut(s)	403
BstC8I	GCNNGC	1 cut(s)	8
BstF5I	GGATG	1 cut(s)	217
BstH2I	RGCGCY	1 cut(s)	263
BstHHI	GCGC	1 cut(s)	262
BstKTI	GATC	3 cut(s)	19, 330, 339
BstMBI	GATC	3 cut(s)	16, 327, 336
BstMWI	GCNNNNNNNGC	3 cut(s)	54, 63, 115
BstSFI	CTRYAG	1 cut(s)	567
BstV1I	GCAGC	1 cut(s)	171
BstV2I	GAAGAC	1 cut(s)	576
BstX2I	RGATCY	1 cut(s)	336
BstYI	RGATCY	1 cut(s)	336
BsuRI	GGCC	1 cut(s)	370
BtsCI	GGATG	1 cut(s)	217
BtsI	GCAGTG	1 cut(s)	501
BtsIMutI	CAGTG	1 cut(s)	501
BveI	ACCTGC	1 cut(s)	256
Cac8I	GCNNGC	1 cut(s)	8
CfoI	GCGC	1 cut(s)	262
CspCI	CAANNNNNGTGG	2 cut(s)	439, 474
CviAII	CATG	1 cut(s)	366
DinI	GGCGCC	1 cut(s)	261
DpnI	GATC	3 cut(s)	18, 329, 338
DpnII	GATC	3 cut(s)	16, 327, 336
DriI	GACNNNNNGTC	1 cut(s)	580
Eam1105I	GACNNNNNGTC	1 cut(s)	580
Eco57I	CTGAAG	1 cut(s)	45
EgeI	GGCGCC	1 cut(s)	261
EheI	GGCGCC	1 cut(s)	261
FaeI	CATG	1 cut(s)	369
FaiI	YATR	6 cut(s)	46, 250, 348, 367, 374, 378
FaqI	GGGAC	2 cut(s)	255, 265
FatI	CATG	1 cut(s)	365
FauI	CCCGC	1 cut(s)	245
FbaI	TGATCA	1 cut(s)	16
Fnu4HI	GCNGC	2 cut(s)	160, 263
FokI	GGATG	1 cut(s)	224
Fsp4HI	GCNGC	2 cut(s)	160, 263
FspBI	CTAG	1 cut(s)	231
GlaI	GCGC	1 cut(s)	261
GluI	GCNGC	2 cut(s)	160, 263
HaeII	RGCGCY	1 cut(s)	263
HaeIII	GGCC	1 cut(s)	370
HapII	CCGG	2 cut(s)	209, 294
HhaI	GCGC	1 cut(s)	262
Hin1I	GRCGYC	1 cut(s)	260
Hin1II	CATG	1 cut(s)	369
Hin6I	GCGC	1 cut(s)	260
HinP1I	GCGC	1 cut(s)	260
HindIII	AAGCTT	1 cut(s)	55
HinfI	GANTC	2 cut(s)	29, 628
HpaII	CCGG	2 cut(s)	209, 294
HphI	GGTGA	3 cut(s)	421, 473, 565
Hpy188I	TCNGA	1 cut(s)	643
HpyAV	CCTTC	5 cut(s)	79, 406, 466, 484, 526
HpyCH4III	ACNGT	2 cut(s)	578, 606
HpyF10VI	GCNNNNNNNGC	3 cut(s)	54, 63, 115
Hsp92I	GRCGYC	1 cut(s)	260
Hsp92II	CATG	1 cut(s)	369
HspAI	GCGC	1 cut(s)	260
KasI	GGCGCC	1 cut(s)	259
Ksp22I	TGATCA	1 cut(s)	16
Kzo9I	GATC	3 cut(s)	16, 327, 336
LmnI	GCTCC	1 cut(s)	63
LpnPI	CCDG	6 cut(s)	36, 83, 222, 251, 290, 307
Lsp1109I	GCAGC	1 cut(s)	171
MaeI	CTAG	1 cut(s)	231
MaeIII	GTNAC	1 cut(s)	361
MalI	GATC	3 cut(s)	18, 329, 338
MboI	GATC	3 cut(s)	16, 327, 336
MboII	GAAGA	4 cut(s)	38, 541, 576, 626
MflI	RGATCY	1 cut(s)	336
Mly113I	GGCGCC	1 cut(s)	260
MmeI	TCCRAC	1 cut(s)	423
MseI	TTAA	3 cut(s)	69, 537, 646
MspA1I	CMGCKG	1 cut(s)	391
MspI	CCGG	2 cut(s)	209, 294
Mva1269I	GAATGC	1 cut(s)	400
MwoI	GCNNNNNNNGC	3 cut(s)	54, 63, 115
NarI	GGCGCC	1 cut(s)	260
NdeII	GATC	3 cut(s)	16, 327, 336
NlaIII	CATG	1 cut(s)	369
NlaIV	GGNNCC	1 cut(s)	261
NmeAIII	GCCGAG	1 cut(s)	406
NmuCI	GTSAC	1 cut(s)	361
NspV	TTCGAA	1 cut(s)	403
PaqCI	CACCTGC	1 cut(s)	256
PctI	GAATGC	1 cut(s)	400
PfeI	GAWTC	2 cut(s)	29, 628
PkrI	GCNGC	2 cut(s)	161, 264
PluTI	GGCGCC	1 cut(s)	263
PspN4I	GGNNCC	1 cut(s)	261
PsuI	RGATCY	1 cut(s)	336
PvuII	CAGCTG	1 cut(s)	391
SaqAI	TTAA	3 cut(s)	69, 537, 646
SatI	GCNGC	2 cut(s)	160, 263
Sau3AI	GATC	3 cut(s)	16, 327, 336
SfcI	CTRYAG	1 cut(s)	567
SfoI	GGCGCC	1 cut(s)	261
SfuI	TTCGAA	1 cut(s)	403
SmlI	CTYRAG	2 cut(s)	104, 194
SmoI	CTYRAG	2 cut(s)	104, 194
SsiI	CCGC	2 cut(s)	252, 263
SspDI	GGCGCC	1 cut(s)	259
SspMI	CTAG	1 cut(s)	231
TaaI	ACNGT	2 cut(s)	578, 606
TaqI	TCGA	4 cut(s)	180, 188, 326, 403
TauI	GCSGC	1 cut(s)	265
TfiI	GAWTC	2 cut(s)	29, 628
Tru1I	TTAA	3 cut(s)	69, 537, 646
Tru9I	TTAA	3 cut(s)	69, 537, 646
TscAI	CASTG	1 cut(s)	501
TseFI	GTSAC	1 cut(s)	361
TseI	GCWGC	1 cut(s)	159
Tsp45I	GTSAC	1 cut(s)	361
TspDTI	ATGAA	1 cut(s)	87
TspGWI	ACGGA	1 cut(s)	580
TspRI	CASTG	1 cut(s)	501
XspI	CTAG	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.