Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002597

Physical Location & Seq

Genomic Coordinates Forward (+)

54278787 .. 54287796

Gene Structure 9010 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0395700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2817 bp

ATGGAGACTCTATGCTTTACTCCTACATCTTCACCACAACATCTCAAAAACCACCACACTTCATCATCAACCTCAGTCCCATCCCTCATCAGACCACTAGTTTTCAAAGACTACAACAATCCAAAGAAGAATATTAACCTTAGAAACCAACAATATTGCAAAGCTATATTAACAAACCCAGCTGAAGTGACCTACTTCAAACCTTCCCCGCTGCCCAGTCCCTTCGAAACAACGCCGCTGCACGAACCCTCACAAGATCACTCCCCTGAGTTAAGGAAGGTCCTCCCGGAGACATTGGAGTACGAGAGCGGCTTTCTCGGTTCCGTGCCGGAAAAGTTCGCCGGAGATGATGGTAACGGAATTCCGCAGACCATGATGAGCTACTTGACGAGGATTTTGACGTCTAATGTTTATGATGTCGCCATTGAGTCACCATTGGACTACGCTTCAAAGCTCTCCAGCAAGCTCGGCGTTCACCTTTGGCTCAAGAGAGAGGATCTACAACCCGTTTTCTCCTTTAAACTGCGAGGAGCTTATAATATGATGGCAAAGCTTTCAAGTGAACAACTGGACAGAGGTGTCATTTGCTCATCAGCAGGGAATCATGCTCAAGGAGTTGCACTATCTGCACGAAAACTAGGGTGCACTGCCGTCATCGTCATGCCTATTACAACTCCGGAAATCAAATGGAAAACAGTGGAGAGTTTAGGTGCAACAGTTGTGCTTGTGGGAGAGTCCTATGATGAAGCTCAATCTTACGCACTACAAAGGGCCAAAGACGAAGGCCTCATATTTGTACATCCTTTTGATCACCCAGATGTGATAGCAGGTCAAGGAACTATAGGAATGGAGATACTACGCCAAATTCAAGGCCCATTGCACGCAATCTTTGTGCCTGTTGGTGGTGGTGGATTAATTGCCGGCATTGCTTCCTATGTCAAGAGTATTAGGCCGGAGGTTAAGATCATTGGTGTAGAGTTATCCGATGCAAATGCAATGGCACTGTCATTACATCACGGTGAGAGAGTTGTGCTTGAGCGAGTTGGAGGATTTGCAGATGGCATGGCAGTCAAAACAGTTGGGGAAGAAACTTTTCGATTGTGCAGGGAACTAATGGATGGAGTTGTTCTTGTTAATCGTGACGCCATTTGTGCATCCATAAAAGACATGTTTGAGCAAAAACGGAGCATACTTGAACCGGCAGGGGCAGCAGCCATTGCTGGAGCTGAAGCATATTGCAAATATTATGGACTGAAGGGTGAAAATGTTGTGGCAATAACCAGTGGAGCAAACATGAATTTTGATAGACTGAGGTTGGTATCCCAACTAGCTGATGTTGGTCGGAGACGTGAAGGTTTCCTTGCAACATTTGTTCCAGAAAAGTGTGGAAGCTTCAAACTTTTTTGTGAATTGGTGGGTCCAATGAATATCATCGAGATTAGCTACAGATTTGATGATAAAAAACAAGAAGGTCTTATCCTGTACAGTGTTTCCTTTCACACAATTTCAGAGTTGGAAGGGATGTTGGACCGTATGAAGTTGGCTCAGCTTCAAACAATTAACCTCACAGATAAAGAACTAATCAAAGATCACATGGAATTTTTGGTGGGAGGTCGATCAAATGTCGAAAACGAGATTCTTTGCCGCCTTTTCTTTCCAGAGAGACCAGGCGCTCTGATGAAGTTCTTAAATGCTTTCAGTCCCCTTTGGAACATTACCTTGTTCCATTACAGTGGACAGGGTGAAACTGGTGCAAATGCTTTGGTGGGTTTCCAAGTCGCAAGCTCTGAGATTGACAAGTTCAAGGTGCTCTATGATGTGGGTGATGGGCAGCCTTTGGTTCCTGCAATGTTCATATTTGGAGACTCAGTTGTGGATGTGGGTAATAACAACAACCTCTTCTCCTTAATCAAATCCAACTTCCCCCCTTATGGAAGAGACTTTGTCAATCACAATCCCACCGGCAGGTTCTGCAATGGAAAGCTTGCTTCAGACTTCACTGCTGAAAACCTTGGCTTTGCTTCTCACCAACCAGCTTATCTCAGCGGAGAAGCCACAGGAAAAAGCCTCTTGATTGGTGCCAACTTTGCTTCAGCTGGCTCTGGCTATTATGACGCTACAGCAAAGTTATTTAATGCAATTTCACTGAACCAGCAGGTGGATTACTACAAGGAATATCAAAATAAAGTGGTGGGAATTGGAGGAAAAGTGAATGCTACATTAATCATATCGGGTGCAATATACCTTGTTAGTGCTGGGAGCAGTGATTTTGTTCAGAACTACTACATCAATCCTCTTCTTAACAAGGTCTATACGACAGACCAGTTCTCTAACATTCTCATGCAGTCCTATGAAAACTTCATACAGAATCTATATGCCTTGGGAGCACGCAGAATCGGAGTGACCACCCTGCCACCACTTGGGTGTCTGCCGGCGGCCATCACAATATTTGGATTAGGCGGCAACAAGTGCGTGGCTAAGCTTAATGGCGATGCAGTCTCATTTAACGACAAGCTAAATGCCACATCTCAGTACTTGCAAACTAAGCTGCCCGGACTCAAGTTGGTCGTCTTTGACATCTACCAGCCTCTCTACAACCTTGTCACGAAGCCTTCAGAGAATGGGTTCTCAGAGGCGAGAAGGGCTTGTTGTGGATCAGGGTTGCTGGAAACATCAATACTATGCAATGCCAAGTCCATCGGCACATGCGCCAATGCGTCAGAGTACGTGTTCTGGGATGGGTTTCATCCTTCGGAGGCCGCAAACAAAATTTTAGCAGATGATTTGCTGAGTAGTGGCATCTCTCTCATCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0008150 GO:0008152 GO:0008194 GO:0009414 GO:0009415 GO:0009628 GO:0009687 GO:0009819 GO:0009987 GO:0010029 GO:0010030 GO:0010035 GO:0010294 GO:0016740 GO:0016757 GO:0016758 GO:0019752 GO:0032787 GO:0035251 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048518 GO:0048580 GO:0048582 GO:0048878 GO:0050789 GO:0050793 GO:0050801 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0055081 GO:0055088 GO:0065007 GO:0065008 GO:0071704 GO:0080043 GO:0080044 GO:0080045 GO:1900140 GO:1901615 GO:1901700 GO:1902265 GO:1902644 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

938

Amino Acids

102.41

Weight (kDa)

6.04

Isoelectric Point (pI)

38.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PALP	PF00291	143 - 429	1e-80	Pyridoxal-phosphate dependent enzyme
Thr_dehydrat_C	PF00585	444 - 531	5.4e-14	C-terminal regulatory domain of Threonine dehydratase
Thr_dehydrat_C	PF00585	537 - 601	5.6e-16	C-terminal regulatory domain of Threonine dehydratase
Lipase_GDSL	PF00657	618 - 928	1.9e-35	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002597)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07250 AT1G07260 AT2G29710 AT2G29730 AT2G29740 AT2G29750
fragaria_vesca	FvH4_3g38400
malus_domestica	MD11G1076200.v1.1 MD11G1076600.v1.1 MD11G1076800.v1.1
prunus_persica	Prupe.6G058900_v2.0.a1 Prupe.6G059000_v2.0.a1
pyrus_communis	pycom11g06400 pycom11g06420 pycom11g06440 pycom11g06460 pycom11g06470
rosa_chinensis	RchiOBHm_Chr5g0069021
rosa_laevigata	RLG00000020959 RLG00000022423 RLG00000036031
rosa_multiflora	Rmu_sc0000853.1_g000006 Rmu_sc0000853.1_g000007 Rmu_sc0000936.1_g000005 Rmu_sc0001913.1_g000022 Rmu_sc0003814.1_g000006 Rmu_sc0006282.1_g000037
rosa_roxburghii	Rroxscaffold_1G00004260 Rroxscaffold_1G00011700
rosa_rugosa	Rorug05G0395700 Rorug07G0215100
rosa_samantha	Rh1BG061100 Rh5BG471600 Rh5CG494000 Rh5DG484200 Rh6CG276400 Rh7BG348600
rosa_wichuraiana	Rw0G006100 Rw2G043210 Rw5G042260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	537
AarI	CACCTGC	1 cut(s)	2146
AasI	GACNNNNNNGTC	1 cut(s)	578
AatII	GACGTC	1 cut(s)	404
Acc36I	ACCTGC	3 cut(s)	818, 1956, 2146
AccB1I	GGYRCC	1 cut(s)	2078
AccB7I	CCANNNNNTGG	2 cut(s)	2158, 2420
AccBSI	CCGCTC	1 cut(s)	309
AccIII	TCCGGA	1 cut(s)	676
AciI	CCGC	9 cut(s)	209, 236, 309, 365, 1645, 2046, 2435, 2460, 2760
AclWI	GGATC	2 cut(s)	504, 2662
AcoI	YGGCCR	1 cut(s)	2436
AcsI	RAATTY	5 cut(s)	360, 864, 1297, 1598, 2769
AcuI	CTGAAG	6 cut(s)	204, 1248, 1274, 1974, 2076, 2598
AcyI	GRCGYC	2 cut(s)	401, 1143
AfaI	GTAC	5 cut(s)	302, 798, 1484, 2534, 2726
AfiI	CCNNNNNNNGG	5 cut(s)	902, 1931, 1965, 2158, 2420
AflIII	ACRYGT	2 cut(s)	1167, 2727
AgsI	TTSAA	9 cut(s)	106, 199, 450, 558, 869, 1196, 1396, 1553, 1804
AhlI	ACTAGT	1 cut(s)	97
AjiI	CACGTC	1 cut(s)	1349
AjnI	CCWGG	1 cut(s)	1666
AleI	CACNNNNGTG	1 cut(s)	2422
Alw21I	GWGCWC	3 cut(s)	647, 1812, 2389
Alw26I	GTCTC	6 cut(s)	284, 1339, 1657, 1857, 1932, 2503
Alw44I	GTGCAC	1 cut(s)	643
AlwI	GGATC	2 cut(s)	504, 2662
AlwNI	CAGNNNCTG	1 cut(s)	1971
Aor13HI	TCCGGA	1 cut(s)	676
AoxI	GGCC	6 cut(s)	771, 784, 871, 950, 2436, 2757
ApaLI	GTGCAC	1 cut(s)	643
ApeKI	GCWGC	6 cut(s)	211, 238, 1208, 1211, 1831, 2548
ApoI	RAATTY	5 cut(s)	360, 864, 1297, 1598, 2769
ArsI	GACNNNNNNTTYG	2 cut(s)	379, 411
AseI	ATTAAT	2 cut(s)	914, 2222
Asp700I	GAANNNNTTC	2 cut(s)	1092, 2624
AspLEI	GCGC	2 cut(s)	1673, 2711
AspS9I	GGNCC	5 cut(s)	280, 771, 872, 1418, 1528
AsuC2I	CCSGG	2 cut(s)	287, 2553
AsuHPI	GGTGA	9 cut(s)	24, 423, 467, 803, 1031, 1271, 1754, 1835, 2018
AsuII	TTCGAA	1 cut(s)	225
AvaII	GGWCC	3 cut(s)	280, 1418, 1528
BaeGI	GKGCMC	1 cut(s)	647
BanI	GGYRCC	1 cut(s)	2078
Bbv12I	GWGCWC	3 cut(s)	647, 1812, 2389
BbvI	GCAGC	6 cut(s)	198, 225, 1220, 1223, 1843, 2535
BccI	CCATC	9 cut(s)	88, 344, 538, 1052, 1112, 1820, 2447, 2705, 2732
BceAI	ACGGC	1 cut(s)	635
BcgI	CGANNNNNNTGC	2 cut(s)	974, 1008
BciT130I	CCWGG	1 cut(s)	1668
BciVI	GTATCC	1 cut(s)	1330
BclI	TGATCA	1 cut(s)	808
BcnI	CCSGG	2 cut(s)	287, 2553
BcoDI	GTCTC	6 cut(s)	284, 1339, 1657, 1857, 1932, 2503
BcuI	ACTAGT	1 cut(s)	97
BfaI	CTAG	3 cut(s)	98, 638, 1328
BfmI	CTRYAG	3 cut(s)	840, 1444, 2118
BfoI	RGCGCY	1 cut(s)	1674
BfuAI	ACCTGC	3 cut(s)	818, 1956, 2146
BfuI	GTATCC	1 cut(s)	1330
BlpI	GCTNAGC	2 cut(s)	1545, 2478
BmcAI	AGTACT	1 cut(s)	2534
Bme1390I	CCNGG	3 cut(s)	287, 1668, 2553
Bme18I	GGWCC	3 cut(s)	280, 1418, 1528
BmgBI	CACGTC	1 cut(s)	1349
BmgT120I	GGNCC	5 cut(s)	280, 771, 872, 1418, 1528
BmiI	GGNNCC	4 cut(s)	322, 1419, 1842, 2080
BmrFI	CCNGG	3 cut(s)	287, 1668, 2553
BmrI	ACTGGG	1 cut(s)	210
BmsI	GCATC	4 cut(s)	976, 1163, 2482, 2808
BmuI	ACTGGG	1 cut(s)	210
BpmI	CTGGAG	2 cut(s)	442, 1242
Bpu1102I	GCTNAGC	2 cut(s)	1545, 2478
Bpu14I	TTCGAA	1 cut(s)	225
BpuEI	CTTGAG	4 cut(s)	470, 594, 1055, 2543
BpuMI	CCSGG	2 cut(s)	287, 2553
BsaAI	YACGTR	1 cut(s)	2728
BsaHI	GRCGYC	2 cut(s)	401, 1143
BsaI	GGTCTC	1 cut(s)	1657
BsaJI	CCNNGG	2 cut(s)	2011, 2379
BsaWI	WCCGGW	1 cut(s)	676
BsaXI	ACNNNNNCTCC	6 cut(s)	1854, 1884, 1886, 1916, 2193, 2223
Bsc4I	CCNNNNNNNGG	5 cut(s)	902, 1931, 1965, 2158, 2420
Bse118I	RCCGGY	4 cut(s)	920, 1198, 1961, 2431
Bse1I	ACTGG	5 cut(s)	216, 573, 1281, 1753, 2323
Bse3DI	GCAATG	7 cut(s)	875, 924, 1002, 1215, 1854, 1981, 2692
BseAI	TCCGGA	1 cut(s)	676
BseBI	CCWGG	1 cut(s)	1668
BseDI	CCNNGG	2 cut(s)	2011, 2379
BseGI	GGATG	8 cut(s)	80, 799, 1123, 1154, 1527, 1882, 2743, 2746
BseLI	CCNNNNNNNGG	5 cut(s)	902, 1931, 1965, 2158, 2420
BseMI	GCAATG	7 cut(s)	875, 924, 1002, 1215, 1854, 1981, 2692
BseNI	ACTGG	5 cut(s)	216, 573, 1281, 1753, 2323
BseRI	GAGGAG	1 cut(s)	543
BseSI	GKGCMC	1 cut(s)	647
BseXI	GCAGC	6 cut(s)	198, 225, 1220, 1223, 1843, 2535
BseYI	CCCAGC	2 cut(s)	178, 2255
BsgI	GTGCAG	3 cut(s)	224, 612, 1123
BshFI	GGCC	6 cut(s)	773, 786, 873, 952, 2438, 2759
BshNI	GGYRCC	1 cut(s)	2078
BsiHKAI	GWGCWC	3 cut(s)	647, 1812, 2389
BslFI	GGGAC	3 cut(s)	62, 204, 1686
BslI	CCNNNNNNNGG	5 cut(s)	902, 1931, 1965, 2158, 2420
BsmAI	GTCTC	6 cut(s)	284, 1339, 1657, 1857, 1932, 2503
BsmBI	CGTCTC	1 cut(s)	1339
BsmFI	GGGAC	3 cut(s)	62, 204, 1686
BsmI	GAATGC	1 cut(s)	2218
BsnI	GGCC	6 cut(s)	773, 786, 873, 952, 2438, 2759
Bso31I	GGTCTC	1 cut(s)	1657
Bsp119I	TTCGAA	1 cut(s)	225
Bsp1286I	GDGCHC	3 cut(s)	647, 1812, 2389
Bsp13I	TCCGGA	1 cut(s)	676
Bsp1407I	TGTACA	2 cut(s)	796, 1482
Bsp143I	GATC	7 cut(s)	256, 496, 808, 963, 1588, 1616, 2654
Bsp1720I	GCTNAGC	2 cut(s)	1545, 2478
BspACI	CCGC	9 cut(s)	209, 236, 309, 365, 1645, 2046, 2435, 2460, 2760
BspANI	GGCC	6 cut(s)	773, 786, 873, 952, 2438, 2759
BspEI	TCCGGA	1 cut(s)	676
BspLI	GGNNCC	4 cut(s)	322, 1419, 1842, 2080
BspMI	ACCTGC	3 cut(s)	818, 1956, 2146
BspPI	GGATC	2 cut(s)	504, 2662
BspT104I	TTCGAA	1 cut(s)	225
BspT107I	GGYRCC	1 cut(s)	2078
BspTNI	GGTCTC	1 cut(s)	1657
BsrBI	CCGCTC	1 cut(s)	309
BsrDI	GCAATG	7 cut(s)	875, 924, 1002, 1215, 1854, 1981, 2692
BsrFI	RCCGGY	4 cut(s)	920, 1198, 1961, 2431
BsrGI	TGTACA	2 cut(s)	796, 1482
BsrI	ACTGG	5 cut(s)	216, 573, 1281, 1753, 2323
BssAI	RCCGGY	4 cut(s)	920, 1198, 1961, 2431
BssECI	CCNNGG	2 cut(s)	2011, 2379
BssMI	GATC	7 cut(s)	256, 496, 808, 963, 1588, 1616, 2654
BssNI	GRCGYC	2 cut(s)	401, 1143
BssT1I	CCWWGG	2 cut(s)	2011, 2379
Bst2UI	CCWGG	1 cut(s)	1668
Bst4CI	ACNGT	8 cut(s)	697, 718, 1005, 1019, 1078, 1487, 1532, 1733
Bst6I	CTCTTC	3 cut(s)	1904, 1930, 2301
BstACI	GRCGYC	2 cut(s)	401, 1143
BstAPI	GCANNNNNTGC	4 cut(s)	626, 1217, 1971, 2469
BstAUI	TGTACA	2 cut(s)	796, 1482
BstBAI	YACGTR	1 cut(s)	2728
BstBI	TTCGAA	1 cut(s)	225
BstC8I	GCNNGC	8 cut(s)	464, 882, 922, 1783, 1986, 2098, 2389, 2433
BstF5I	GGATG	8 cut(s)	80, 799, 1123, 1154, 1527, 1882, 2743, 2746
BstH2I	RGCGCY	1 cut(s)	1674
BstHHI	GCGC	2 cut(s)	1673, 2711
BstKTI	GATC	7 cut(s)	259, 499, 811, 966, 1591, 1619, 2657
BstMAI	GTCTC	6 cut(s)	284, 1339, 1657, 1857, 1932, 2503
BstMBI	GATC	7 cut(s)	256, 496, 808, 963, 1588, 1616, 2654
BstNI	CCWGG	1 cut(s)	1668
BstNSI	RCATGY	2 cut(s)	1171, 2709
BstSCI	CCNGG	3 cut(s)	285, 1666, 2551
BstSFI	CTRYAG	3 cut(s)	840, 1444, 2118
BstSLI	GKGCMC	1 cut(s)	647
BstV1I	GCAGC	6 cut(s)	198, 225, 1220, 1223, 1843, 2535
BstX2I	RGATCY	1 cut(s)	496
BstXI	CCANNNNNNTGG	1 cut(s)	1733
BstYI	RGATCY	1 cut(s)	496
BsuI	GTATCC	1 cut(s)	1330
BsuRI	GGCC	6 cut(s)	773, 786, 873, 952, 2438, 2759
BtgZI	GCGATG	1 cut(s)	2505
BtrI	CACGTC	1 cut(s)	1349
BtsCI	GGATG	8 cut(s)	80, 799, 1123, 1154, 1527, 1882, 2743, 2746
BtsI	GCAGTG	3 cut(s)	645, 1998, 2269
BtsIMutI	CAGTG	9 cut(s)	645, 702, 1001, 1288, 1492, 1738, 1998, 2144, 2269
BveI	ACCTGC	3 cut(s)	818, 1956, 2146
Cac8I	GCNNGC	8 cut(s)	464, 882, 922, 1783, 1986, 2098, 2389, 2433
CaiI	CAGNNNCTG	1 cut(s)	1971
CfoI	GCGC	2 cut(s)	1673, 2711
Cfr10I	RCCGGY	4 cut(s)	920, 1198, 1961, 2431
Cfr13I	GGNCC	5 cut(s)	280, 771, 872, 1418, 1528
CseI	GACGC	3 cut(s)	1151, 2123, 2706
Csp6I	GTAC	5 cut(s)	301, 797, 1483, 2533, 2725
CviAII	CATG	9 cut(s)	373, 605, 661, 1063, 1168, 1294, 1594, 2341, 2706
CviQI	GTAC	5 cut(s)	301, 797, 1483, 2533, 2725
DpnI	GATC	7 cut(s)	258, 498, 810, 965, 1590, 1618, 2656
DpnII	GATC	7 cut(s)	256, 496, 808, 963, 1588, 1616, 2654
DraI	TTTAAA	1 cut(s)	520
DrdI	GACNNNNNNGTC	1 cut(s)	578
DseDI	GACNNNNNNGTC	1 cut(s)	578
EaeI	YGGCCR	1 cut(s)	2436
Eam1104I	CTCTTC	3 cut(s)	1904, 1930, 2301
EarI	CTCTTC	3 cut(s)	1904, 1930, 2301
Eco130I	CCWWGG	2 cut(s)	2011, 2379
Eco147I	AGGCCT	1 cut(s)	786
Eco31I	GGTCTC	1 cut(s)	1657
Eco47I	GGWCC	3 cut(s)	280, 1418, 1528
Eco57I	CTGAAG	6 cut(s)	204, 1248, 1274, 1974, 2076, 2598
EcoO109I	RGGNCCY	1 cut(s)	280
EcoRI	GAATTC	1 cut(s)	360
EcoRII	CCWGG	1 cut(s)	1666
EcoT14I	CCWWGG	2 cut(s)	2011, 2379
ErhI	CCWWGG	2 cut(s)	2011, 2379
Esp3I	CGTCTC	1 cut(s)	1339
FaeI	CATG	9 cut(s)	376, 608, 664, 1066, 1171, 1297, 1597, 2344, 2709
FalI	AAGNNNNNCTT	4 cut(s)	1344, 1376, 1458, 1490
FaqI	GGGAC	3 cut(s)	62, 204, 1686
FatI	CATG	9 cut(s)	372, 604, 660, 1062, 1167, 1293, 1593, 2340, 2705
FauI	CCCGC	1 cut(s)	216
FbaI	TGATCA	1 cut(s)	808
FokI	GGATG	8 cut(s)	67, 786, 1130, 1141, 1534, 1889, 2733, 2750
FspBI	CTAG	3 cut(s)	98, 638, 1328
GlaI	GCGC	2 cut(s)	1672, 2710
GsaI	CCCAGC	2 cut(s)	182, 2259
GsuI	CTGGAG	2 cut(s)	442, 1242
HaeII	RGCGCY	1 cut(s)	1674
HaeIII	GGCC	6 cut(s)	773, 786, 873, 952, 2438, 2759
HgaI	GACGC	3 cut(s)	1151, 2123, 2706
HhaI	GCGC	2 cut(s)	1673, 2711
Hin1I	GRCGYC	2 cut(s)	401, 1143
Hin1II	CATG	9 cut(s)	376, 608, 664, 1066, 1171, 1297, 1597, 2344, 2709
Hin6I	GCGC	2 cut(s)	1671, 2709
HinP1I	GCGC	2 cut(s)	1671, 2709
HindIII	AAGCTT	4 cut(s)	551, 1390, 1982, 2480
HinfI	GANTC	9 cut(s)	7, 428, 601, 734, 1636, 1865, 2368, 2394, 2556
HphI	GGTGA	9 cut(s)	24, 423, 467, 803, 1031, 1271, 1754, 1835, 2018
Hpy166II	GTNNAC	4 cut(s)	475, 563, 645, 1736
Hpy188III	TCNNGA	9 cut(s)	487, 677, 940, 1139, 1376, 1435, 1658, 2071, 2605
Hpy8I	GTNNAC	4 cut(s)	475, 563, 645, 1736
HpyCH4III	ACNGT	8 cut(s)	697, 718, 1005, 1019, 1078, 1487, 1532, 1733
HpyCH4IV	ACGT	3 cut(s)	401, 1348, 2727
HpySE526I	ACGT	3 cut(s)	401, 1348, 2727
Hsp92I	GRCGYC	2 cut(s)	401, 1143
Hsp92II	CATG	9 cut(s)	376, 608, 664, 1066, 1171, 1297, 1597, 2344, 2709
HspAI	GCGC	2 cut(s)	1671, 2709
Kpn2I	TCCGGA	1 cut(s)	676
KroI	GCCGGC	2 cut(s)	920, 2431
KroNI	GCCGGC	2 cut(s)	922, 2433
Ksp22I	TGATCA	1 cut(s)	808
Kzo9I	GATC	7 cut(s)	256, 496, 808, 963, 1588, 1616, 2654
LmnI	GCTCC	6 cut(s)	530, 1185, 1223, 1286, 2259, 2384
Lsp1109I	GCAGC	6 cut(s)	198, 225, 1220, 1223, 1843, 2535
LweI	GCATC	4 cut(s)	976, 1163, 2482, 2808
MaeI	CTAG	3 cut(s)	98, 638, 1328
MaeII	ACGT	3 cut(s)	401, 1348, 2727
MaeIII	GTNAC	6 cut(s)	187, 353, 429, 1139, 2401, 2602
MalI	GATC	7 cut(s)	258, 498, 810, 965, 1590, 1618, 2656
MbiI	CCGCTC	1 cut(s)	309
MboI	GATC	7 cut(s)	256, 496, 808, 963, 1588, 1616, 2654
MboII	GAAGA	7 cut(s)	21, 139, 1097, 1891, 1947, 2288, 2803
MflI	RGATCY	1 cut(s)	496
MhlI	GDGCHC	3 cut(s)	647, 1812, 2389
MlyI	GAGTC	4 cut(s)	437, 743, 1859, 2550
MmeI	TCCRAC	5 cut(s)	1024, 1322, 1494, 1506, 1941
MroI	TCCGGA	1 cut(s)	676
MroNI	GCCGGC	2 cut(s)	920, 2431
MroXI	GAANNNNTTC	2 cut(s)	1092, 2624
MslI	CAYNNNNRTG	6 cut(s)	659, 816, 1017, 1731, 2339, 2422
MspA1I	CMGCKG	5 cut(s)	182, 211, 238, 2046, 2096
MspR9I	CCNGG	3 cut(s)	287, 1668, 2553
Mva1269I	GAATGC	1 cut(s)	2218
MvaI	CCWGG	1 cut(s)	1668
NaeI	GCCGGC	2 cut(s)	922, 2433
NciI	CCSGG	2 cut(s)	287, 2553
NdeII	GATC	7 cut(s)	256, 496, 808, 963, 1588, 1616, 2654
NgoMIV	GCCGGC	2 cut(s)	920, 2431
NlaIII	CATG	9 cut(s)	376, 608, 664, 1066, 1171, 1297, 1597, 2344, 2709
NlaIV	GGNNCC	4 cut(s)	322, 1419, 1842, 2080
NmeAIII	GCCGAG	1 cut(s)	447
NmuCI	GTSAC	5 cut(s)	187, 429, 1139, 2401, 2602
NspI	RCATGY	2 cut(s)	1171, 2709
NspV	TTCGAA	1 cut(s)	225
OliI	CACNNNNGTG	1 cut(s)	2422
PaqCI	CACCTGC	1 cut(s)	2146
PceI	AGGCCT	1 cut(s)	786
PciI	ACATGT	1 cut(s)	1167
PctI	GAATGC	1 cut(s)	2218
PdiI	GCCGGC	2 cut(s)	922, 2433
PdmI	GAANNNNTTC	2 cut(s)	1092, 2624
PfeI	GAWTC	4 cut(s)	601, 1636, 2368, 2394
PflFI	GACNNNGTC	1 cut(s)	1943
PflMI	CCANNNNNTGG	2 cut(s)	2158, 2420
PfoI	TCCNGGA	1 cut(s)	285
PleI	GAGTC	4 cut(s)	436, 742, 1859, 2550
PpsI	GAGTC	4 cut(s)	436, 742, 1859, 2550
Ppu21I	YACGTR	1 cut(s)	2728
PpuMI	RGGWCCY	1 cut(s)	280
PscI	ACATGT	1 cut(s)	1167
PshBI	ATTAAT	2 cut(s)	914, 2222
PsiI	TTATAA	1 cut(s)	537
Psp5II	RGGWCCY	1 cut(s)	280
Psp6I	CCWGG	1 cut(s)	1666
PspFI	CCCAGC	2 cut(s)	178, 2255
PspGI	CCWGG	1 cut(s)	1666
PspN4I	GGNNCC	4 cut(s)	322, 1419, 1842, 2080
PspPI	GGNCC	5 cut(s)	280, 771, 872, 1418, 1528
PspPPI	RGGWCCY	1 cut(s)	280
PstNI	CAGNNNCTG	1 cut(s)	1971
PsuI	RGATCY	1 cut(s)	496
PsyI	GACNNNGTC	1 cut(s)	1943
PvuII	CAGCTG	2 cut(s)	182, 2096
RsaI	GTAC	5 cut(s)	302, 798, 1484, 2534, 2726
RsaNI	GTAC	5 cut(s)	301, 797, 1483, 2533, 2725
RseI	CAYNNNNRTG	6 cut(s)	659, 816, 1017, 1731, 2339, 2422
Sau3AI	GATC	7 cut(s)	256, 496, 808, 963, 1588, 1616, 2654
Sau96I	GGNCC	5 cut(s)	280, 771, 872, 1418, 1528
ScaI	AGTACT	1 cut(s)	2534
SchI	GAGTC	4 cut(s)	437, 743, 1859, 2550
ScrFI	CCNGG	3 cut(s)	287, 1668, 2553
SduI	GDGCHC	3 cut(s)	647, 1812, 2389
SfaNI	GCATC	4 cut(s)	976, 1163, 2482, 2808
SfcI	CTRYAG	3 cut(s)	840, 1444, 2118
SfuI	TTCGAA	1 cut(s)	225
SinI	GGWCC	3 cut(s)	280, 1418, 1528
SmiMI	CAYNNNNRTG	6 cut(s)	659, 816, 1017, 1731, 2339, 2422
SmlI	CTYRAG	4 cut(s)	485, 609, 1034, 2558
SmoI	CTYRAG	4 cut(s)	485, 609, 1034, 2558
SpeI	ACTAGT	1 cut(s)	97
SseBI	AGGCCT	1 cut(s)	786
SsiI	CCGC	9 cut(s)	209, 236, 309, 365, 1645, 2046, 2435, 2460, 2760
SspI	AATATT	4 cut(s)	133, 155, 1244, 2448
SspMI	CTAG	3 cut(s)	98, 638, 1328
StuI	AGGCCT	1 cut(s)	786
StyD4I	CCNGG	3 cut(s)	285, 1666, 2551
StyI	CCWWGG	2 cut(s)	2011, 2379
TaaI	ACNGT	8 cut(s)	697, 718, 1005, 1019, 1078, 1487, 1532, 1733
TaiI	ACGT	3 cut(s)	404, 1351, 2730
TaqI	TCGA	5 cut(s)	225, 1096, 1434, 1615, 1626
TatI	WGTACW	3 cut(s)	796, 1482, 2532
TauI	GCSGC	6 cut(s)	238, 312, 1647, 2438, 2463, 2762
TfiI	GAWTC	4 cut(s)	601, 1636, 2368, 2394
TscAI	CASTG	9 cut(s)	652, 702, 1008, 1288, 1492, 1738, 2005, 2151, 2269
TseFI	GTSAC	5 cut(s)	187, 429, 1139, 2401, 2602
TseI	GCWGC	6 cut(s)	211, 238, 1208, 1211, 1831, 2548
Tsp45I	GTSAC	5 cut(s)	187, 429, 1139, 2401, 2602
TspGWI	ACGGA	3 cut(s)	313, 372, 1198
TspRI	CASTG	9 cut(s)	652, 702, 1008, 1288, 1492, 1738, 2005, 2151, 2269
Tth111I	GACNNNGTC	1 cut(s)	1943
Van91I	CCANNNNNTGG	2 cut(s)	2158, 2420
VneI	GTGCAC	1 cut(s)	643
VpaK11BI	GGWCC	3 cut(s)	280, 1418, 1528
VspI	ATTAAT	2 cut(s)	914, 2222
XapI	RAATTY	5 cut(s)	360, 864, 1297, 1598, 2769
XceI	RCATGY	2 cut(s)	1171, 2709
XmnI	GAANNNNTTC	2 cut(s)	1092, 2624
XspI	CTAG	3 cut(s)	98, 638, 1328
ZraI	GACGTC	1 cut(s)	402
ZrmI	AGTACT	1 cut(s)	2534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.