pycom11g09340

THO complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0005413
Physical Location & Seq
Reverse (-)
7522355 .. 7524557
2203 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 966 bp
ATGAAGCAAATGACCGTATATAAACGAATCATTCTTTCACAGACTTCTTCCTCCGACTCTCTCTCATCATCTTCGGTTCGTAACTTAGAACTCCTACCGCCACTAGAAACCCTAACCCTCTCTCTCTCCACTTTCTCGCTCCTAGGGTTTCGTTTCTTCCCGCTGTCAAACAATATGCAGGACCCTCTAAGCATGTCCCTGGACGACCTCATCAAGACCAGCAAGAAATCGGGATCCGGTAACGCCCGAGGCCGCGGCGGCCGGGGGACCTCCGGACCCGGACCCGCCCGCCGCTTGCCGAATCGCGGTGCCAATCGTACGACGCCGTACCCGGCTGCGGCCAAGGCGCCGGAGGCTGCGTGGCAACACGACATGTATGGGGATCTTGGTGCGGCGGCGTACGCGGCTCCAGCCGGAAGAGCATCGGCTATCGAAACCGGAACCAAGCTCTACATCTCCAATCTCGATTATGGCGTTTCCAATGAGGACATTAAGGAATTGTTTTCTGAGGTTGGTGACCTGAAACGTTATGGAGTACATTATGACAGAAGTGGGAGATCAAAGGGAACTGCAGATGTAGTTTTCTCACGACGAACGGATGCTGCAGCGGCTGTTAAAAGATACAACAATGTTCAGCTTGATGGGAAGCCGATGAAGATTGAGATTGTAGGAACGAACATTGGGACACCTGGAGCCCCACCTGCTTTCCCCCCTGCTGCAAATGGAAATTTTGGAAATCGGAATGGACCACCCATGGGGGGACAAAGTAGGGGTGGTGCATTTGGACGTATACGCGGTGGCGGTGGCGGCGGCGGTGGCGGGCGTGGTGGCCGTGGTCCTAGAAGGGGCGGTGGTGGACGTGGAAGTGGAAGAGGCCGTGGTGAAAAGGACCAAAAGGTTTCTGCTGAAGATCTTGATGCCGAGCTAGAGAAGTACCATGCAGCAGCAGAATCAATGCAAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko03015 ko03040 ko05168 map03013 map03015 map03040 map05168
Pfam Domains
Protein Families
FoP_duplication RRM_1

Protein Analysis

322

Amino Acids

33.62

Weight (kDa)

9.98

Isoelectric Point (pI)

45.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 150 - 218 5.6e-15 RNA recognition motif
FoP_duplication PF13865 258 - 314 8.3e-06 C-terminal duplication domain of Friend of PRMT1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 709
Acc36I ACCTGC 1 cut(s) 709
AccB1I GGYRCC 2 cut(s) 308, 346
AccI GTMKAC 1 cut(s) 790
AccII CGCG 4 cut(s) 255, 306, 404, 795
AccIII TCCGGA 1 cut(s) 272
AclI AACGTT 1 cut(s) 526
AclWI GGATC 3 cut(s) 228, 241, 390
AcoI YGGCCR 3 cut(s) 259, 339, 829
AcsI RAATTY 1 cut(s) 727
AcuI CTGAAG 1 cut(s) 927
AcyI GRCGYC 2 cut(s) 323, 347
AfaI GTAC 5 cut(s) 319, 329, 401, 537, 935
AfiI CCNNNNNNNGG 5 cut(s) 305, 337, 755, 758, 845
AflIII ACRYGT 1 cut(s) 372
AjiI CACGTC 1 cut(s) 860
AjnI CCWGG 2 cut(s) 198, 688
AluBI AGCT 3 cut(s) 448, 637, 925
AluI AGCT 3 cut(s) 448, 637, 925
AlwI GGATC 3 cut(s) 228, 241, 390
AlwNI CAGNNNCTG 1 cut(s) 611
Ama87I CYCGRG 1 cut(s) 246
Aor13HI TCCGGA 1 cut(s) 272
AoxI GGCC 5 cut(s) 250, 259, 339, 829, 874
ApeKI GCWGC 7 cut(s) 335, 356, 602, 605, 716, 941, 944
ApoI RAATTY 1 cut(s) 727
AspA2I CCTAGG 1 cut(s) 142
AspLEI GCGC 1 cut(s) 349
AspS9I GGNCC 7 cut(s) 181, 267, 275, 281, 746, 836, 889
AsuC2I CCSGG 3 cut(s) 263, 279, 332
AsuHPI GGTGA 2 cut(s) 527, 893
AvaI CYCGRG 1 cut(s) 246
AvaII GGWCC 7 cut(s) 181, 267, 275, 281, 746, 836, 889
AvrII CCTAGG 1 cut(s) 142
BamHI GGATCC 1 cut(s) 233
BanI GGYRCC 2 cut(s) 308, 346
BanII GRGCYC 1 cut(s) 697
BbvI GCAGC 7 cut(s) 322, 343, 589, 617, 703, 953, 956
BccI CCATC 1 cut(s) 635
BceAI ACGGC 3 cut(s) 310, 816, 861
BciT130I CCWGG 2 cut(s) 200, 690
BcnI CCSGG 3 cut(s) 263, 279, 332
BfaI CTAG 4 cut(s) 104, 143, 840, 926
BfmI CTRYAG 2 cut(s) 570, 603
BfoI RGCGCY 1 cut(s) 350
BfuAI ACCTGC 1 cut(s) 709
BglI GCCNNNNNGGC 1 cut(s) 258
BglII AGATCT 1 cut(s) 910
BlnI CCTAGG 1 cut(s) 142
Bme1390I CCNGG 5 cut(s) 200, 263, 279, 332, 690
Bme18I GGWCC 7 cut(s) 181, 267, 275, 281, 746, 836, 889
BmeT110I CYCGRG 1 cut(s) 246
BmgBI CACGTC 1 cut(s) 860
BmgT120I GGNCC 7 cut(s) 181, 267, 275, 281, 746, 836, 889
BmrFI CCNGG 5 cut(s) 200, 263, 279, 332, 690
BmsI GCATC 3 cut(s) 431, 589, 907
BpmI CTGGAG 2 cut(s) 393, 711
BpuMI CCSGG 3 cut(s) 263, 279, 332
BsaHI GRCGYC 2 cut(s) 323, 347
BsaJI CCNNGG 9 cut(s) 142, 198, 247, 253, 262, 342, 753, 832, 877
BsaWI WCCGGW 3 cut(s) 236, 272, 437
BsaXI ACNNNNNCTCC 2 cut(s) 344, 374
Bsc4I CCNNNNNNNGG 5 cut(s) 305, 337, 755, 758, 845
BseAI TCCGGA 1 cut(s) 272
BseBI CCWGG 2 cut(s) 200, 690
BseDI CCNNGG 9 cut(s) 142, 198, 247, 253, 262, 342, 753, 832, 877
BseGI GGATG 1 cut(s) 604
BseLI CCNNNNNNNGG 5 cut(s) 305, 337, 755, 758, 845
BseMII CTCAG 1 cut(s) 498
BseX3I CGGCCG 1 cut(s) 259
BseXI GCAGC 7 cut(s) 322, 343, 589, 617, 703, 953, 956
Bsh1236I CGCG 4 cut(s) 255, 306, 404, 795
Bsh1285I CGRYCG 1 cut(s) 262
BshFI GGCC 5 cut(s) 252, 261, 341, 831, 876
BshNI GGYRCC 2 cut(s) 308, 346
BsiEI CGRYCG 1 cut(s) 262
BsiHKCI CYCGRG 1 cut(s) 246
BsiSI CCGG 8 cut(s) 237, 262, 273, 279, 332, 350, 414, 438
BsiWI CGTACG 2 cut(s) 317, 399
BslFI GGGAC 4 cut(s) 181, 280, 697, 774
BslI CCNNNNNNNGG 5 cut(s) 305, 337, 755, 758, 845
BsmFI GGGAC 4 cut(s) 181, 280, 697, 774
BsnI GGCC 5 cut(s) 252, 261, 341, 831, 876
BsoBI CYCGRG 1 cut(s) 246
Bsp1286I GDGCHC 1 cut(s) 697
Bsp13I TCCGGA 1 cut(s) 272
Bsp143I GATC 4 cut(s) 233, 382, 557, 910
Bsp19I CCATGG 1 cut(s) 753
BspANI GGCC 5 cut(s) 252, 261, 341, 831, 876
BspCNI CTCAG 1 cut(s) 499
BspEI TCCGGA 1 cut(s) 272
BspFNI CGCG 4 cut(s) 255, 306, 404, 795
BspMAI CTGCAG 2 cut(s) 574, 607
BspMI ACCTGC 1 cut(s) 709
BspPI GGATC 3 cut(s) 228, 241, 390
BspQI GCTCTTC 1 cut(s) 412
BspT107I GGYRCC 2 cut(s) 308, 346
BssECI CCNNGG 9 cut(s) 142, 198, 247, 253, 262, 342, 753, 832, 877
BssMI GATC 4 cut(s) 233, 382, 557, 910
BssNAI GTATAC 1 cut(s) 791
BssNI GRCGYC 2 cut(s) 323, 347
BssT1I CCWWGG 3 cut(s) 142, 342, 753
Bst1107I GTATAC 1 cut(s) 791
Bst2UI CCWGG 2 cut(s) 200, 690
Bst4CI ACNGT 1 cut(s) 16
Bst6I CTCTTC 2 cut(s) 412, 865
BstACI GRCGYC 2 cut(s) 323, 347
BstC8I GCNNGC 3 cut(s) 289, 296, 821
BstDEI CTNAG 3 cut(s) 85, 188, 507
BstDSI CCRYGG 4 cut(s) 253, 753, 832, 877
BstEII GGTNACC 1 cut(s) 515
BstF5I GGATG 1 cut(s) 604
BstFNI CGCG 4 cut(s) 255, 306, 404, 795
BstH2I RGCGCY 1 cut(s) 350
BstHHI GCGC 1 cut(s) 349
BstKTI GATC 4 cut(s) 236, 385, 560, 913
BstMBI GATC 4 cut(s) 233, 382, 557, 910
BstMCI CGRYCG 1 cut(s) 262
BstNI CCWGG 2 cut(s) 200, 690
BstNSI RCATGY 2 cut(s) 196, 376
BstPI GGTNACC 1 cut(s) 515
BstSCI CCNGG 5 cut(s) 198, 261, 277, 330, 688
BstSFI CTRYAG 2 cut(s) 570, 603
BstUI CGCG 4 cut(s) 255, 306, 404, 795
BstV1I GCAGC 7 cut(s) 322, 343, 589, 617, 703, 953, 956
BstX2I RGATCY 3 cut(s) 233, 382, 910
BstYI RGATCY 3 cut(s) 233, 382, 910
BstZ17I GTATAC 1 cut(s) 791
BstZI CGGCCG 1 cut(s) 259
BsuRI GGCC 5 cut(s) 252, 261, 341, 831, 876
BtgI CCRYGG 4 cut(s) 253, 753, 832, 877
BtrI CACGTC 1 cut(s) 860
BtsCI GGATG 1 cut(s) 604
BveI ACCTGC 1 cut(s) 709
Cac8I GCNNGC 3 cut(s) 289, 296, 821
CaiI CAGNNNCTG 1 cut(s) 611
CfoI GCGC 1 cut(s) 349
Cfr13I GGNCC 7 cut(s) 181, 267, 275, 281, 746, 836, 889
Cfr42I CCGCGG 1 cut(s) 256
CseI GACGC 1 cut(s) 331
Csp6I GTAC 5 cut(s) 318, 328, 400, 536, 934
CviAII CATG 4 cut(s) 193, 373, 754, 938
CviQI GTAC 5 cut(s) 318, 328, 400, 536, 934
DdeI CTNAG 3 cut(s) 85, 188, 507
DinI GGCGCC 1 cut(s) 348
DpnI GATC 4 cut(s) 235, 384, 559, 912
DpnII GATC 4 cut(s) 233, 382, 557, 910
EaeI YGGCCR 3 cut(s) 259, 339, 829
EagI CGGCCG 1 cut(s) 259
Eam1104I CTCTTC 2 cut(s) 412, 865
EarI CTCTTC 2 cut(s) 412, 865
EclXI CGGCCG 1 cut(s) 259
Eco130I CCWWGG 3 cut(s) 142, 342, 753
Eco24I GRGCYC 1 cut(s) 697
Eco47I GGWCC 7 cut(s) 181, 267, 275, 281, 746, 836, 889
Eco52I CGGCCG 1 cut(s) 259
Eco57I CTGAAG 1 cut(s) 927
Eco88I CYCGRG 1 cut(s) 246
Eco91I GGTNACC 1 cut(s) 515
EcoO109I RGGNCCY 2 cut(s) 181, 267
EcoO65I GGTNACC 1 cut(s) 515
EcoRII CCWGG 2 cut(s) 198, 688
EcoT14I CCWWGG 3 cut(s) 142, 342, 753
EcoT38I GRGCYC 1 cut(s) 697
EgeI GGCGCC 1 cut(s) 348
EheI GGCGCC 1 cut(s) 348
ErhI CCWWGG 3 cut(s) 142, 342, 753
FaeI CATG 4 cut(s) 196, 376, 757, 941
FaqI GGGAC 4 cut(s) 181, 280, 697, 774
FatI CATG 4 cut(s) 192, 372, 753, 937
FauI CCCGC 4 cut(s) 168, 292, 296, 812
FblI GTMKAC 1 cut(s) 790
FokI GGATG 1 cut(s) 611
FriOI GRGCYC 1 cut(s) 697
FspBI CTAG 4 cut(s) 104, 143, 840, 926
GlaI GCGC 1 cut(s) 348
GsuI CTGGAG 2 cut(s) 393, 711
HaeII RGCGCY 1 cut(s) 350
HaeIII GGCC 5 cut(s) 252, 261, 341, 831, 876
HapII CCGG 8 cut(s) 237, 262, 273, 279, 332, 350, 414, 438
HgaI GACGC 1 cut(s) 331
HhaI GCGC 1 cut(s) 349
Hin1I GRCGYC 2 cut(s) 323, 347
Hin1II CATG 4 cut(s) 196, 376, 757, 941
Hin6I GCGC 1 cut(s) 347
HinP1I GCGC 1 cut(s) 347
HinfI GANTC 4 cut(s) 27, 56, 301, 950
HpaII CCGG 8 cut(s) 237, 262, 273, 279, 332, 350, 414, 438
HphI GGTGA 2 cut(s) 527, 893
Hpy166II GTNNAC 2 cut(s) 791, 857
Hpy188I TCNGA 3 cut(s) 55, 508, 741
Hpy188III TCNNGA 6 cut(s) 214, 231, 273, 464, 588, 914
Hpy8I GTNNAC 2 cut(s) 791, 857
Hpy99I CGWCG 2 cut(s) 325, 594
HpyAV CCTTC 1 cut(s) 837
HpyCH4III ACNGT 1 cut(s) 16
HpyCH4IV ACGT 3 cut(s) 526, 787, 859
HpyCH4V TGCA 7 cut(s) 178, 572, 605, 719, 779, 941, 958
HpyF3I CTNAG 3 cut(s) 85, 188, 507
HpySE526I ACGT 3 cut(s) 526, 787, 859
Hsp92I GRCGYC 2 cut(s) 323, 347
Hsp92II CATG 4 cut(s) 196, 376, 757, 941
HspAI GCGC 1 cut(s) 347
KasI GGCGCC 1 cut(s) 346
Kpn2I TCCGGA 1 cut(s) 272
KspI CCGCGG 1 cut(s) 256
Kzo9I GATC 4 cut(s) 233, 382, 557, 910
LguI GCTCTTC 1 cut(s) 412
LmnI GCTCC 3 cut(s) 144, 412, 692
Lsp1109I GCAGC 7 cut(s) 322, 343, 589, 617, 703, 953, 956
LweI GCATC 3 cut(s) 431, 589, 907
MaeI CTAG 4 cut(s) 104, 143, 840, 926
MaeII ACGT 3 cut(s) 526, 787, 859
MaeIII GTNAC 3 cut(s) 80, 239, 515
MalI GATC 4 cut(s) 235, 384, 559, 912
MboI GATC 4 cut(s) 233, 382, 557, 910
MboII GAAGA 7 cut(s) 39, 63, 148, 429, 667, 882, 920
MflI RGATCY 3 cut(s) 233, 382, 910
MhlI GDGCHC 1 cut(s) 697
MluCI AATT 2 cut(s) 497, 727
Mly113I GGCGCC 1 cut(s) 347
MlyI GAGTC 1 cut(s) 50
MmeI TCCRAC 1 cut(s) 78
MroI TCCGGA 1 cut(s) 272
MseI TTAA 2 cut(s) 492, 615
MspA1I CMGCKG 3 cut(s) 163, 255, 608
MspI CCGG 8 cut(s) 237, 262, 273, 279, 332, 350, 414, 438
MspR9I CCNGG 5 cut(s) 200, 263, 279, 332, 690
MvaI CCWGG 2 cut(s) 200, 690
MvnI CGCG 4 cut(s) 255, 306, 404, 795
NarI GGCGCC 1 cut(s) 347
NciI CCSGG 3 cut(s) 263, 279, 332
NcoI CCATGG 1 cut(s) 753
NdeII GATC 4 cut(s) 233, 382, 557, 910
NlaIII CATG 4 cut(s) 196, 376, 757, 941
NmeAIII GCCGAG 1 cut(s) 946
NmuCI GTSAC 1 cut(s) 515
NspI RCATGY 2 cut(s) 196, 376
PaqCI CACCTGC 1 cut(s) 709
PciI ACATGT 1 cut(s) 372
PciSI GCTCTTC 1 cut(s) 412
PcsI WCGNNNNNNNCGW 1 cut(s) 471
PfeI GAWTC 3 cut(s) 27, 301, 950
Pfl23II CGTACG 2 cut(s) 317, 399
PleI GAGTC 1 cut(s) 50
PluTI GGCGCC 1 cut(s) 350
PpsI GAGTC 1 cut(s) 50
PpuMI RGGWCCY 2 cut(s) 181, 267
PscI ACATGT 1 cut(s) 372
Psp1406I AACGTT 1 cut(s) 526
Psp5II RGGWCCY 2 cut(s) 181, 267
Psp6I CCWGG 2 cut(s) 198, 688
PspEI GGTNACC 1 cut(s) 515
PspGI CCWGG 2 cut(s) 198, 688
PspLI CGTACG 2 cut(s) 317, 399
PspPI GGNCC 7 cut(s) 181, 267, 275, 281, 746, 836, 889
PspPPI RGGWCCY 2 cut(s) 181, 267
PstI CTGCAG 2 cut(s) 574, 607
PstNI CAGNNNCTG 1 cut(s) 611
PsuI RGATCY 3 cut(s) 233, 382, 910
RsaI GTAC 5 cut(s) 319, 329, 401, 537, 935
RsaNI GTAC 5 cut(s) 318, 328, 400, 536, 934
SacII CCGCGG 1 cut(s) 256
SapI GCTCTTC 1 cut(s) 412
SaqAI TTAA 2 cut(s) 492, 615
Sau3AI GATC 4 cut(s) 233, 382, 557, 910
Sau96I GGNCC 7 cut(s) 181, 267, 275, 281, 746, 836, 889
SchI GAGTC 1 cut(s) 50
ScrFI CCNGG 5 cut(s) 200, 263, 279, 332, 690
SduI GDGCHC 1 cut(s) 697
SfaNI GCATC 3 cut(s) 431, 589, 907
SfcI CTRYAG 2 cut(s) 570, 603
SfiI GGCCNNNNNGGCC 1 cut(s) 258
SfoI GGCGCC 1 cut(s) 348
Sfr303I CCGCGG 1 cut(s) 256
SgrBI CCGCGG 1 cut(s) 256
SinI GGWCC 7 cut(s) 181, 267, 275, 281, 746, 836, 889
Sse9I AATT 2 cut(s) 497, 727
SspDI GGCGCC 1 cut(s) 346
SspMI CTAG 4 cut(s) 104, 143, 840, 926
StyD4I CCNGG 5 cut(s) 198, 261, 277, 330, 688
StyI CCWWGG 3 cut(s) 142, 342, 753
TaaI ACNGT 1 cut(s) 16
TaiI ACGT 3 cut(s) 529, 790, 862
TaqI TCGA 2 cut(s) 432, 465
TasI AATT 2 cut(s) 497, 727
TatI WGTACW 1 cut(s) 535
TfiI GAWTC 3 cut(s) 27, 301, 950
Tru1I TTAA 2 cut(s) 492, 615
Tru9I TTAA 2 cut(s) 492, 615
TseFI GTSAC 1 cut(s) 515
TseI GCWGC 7 cut(s) 335, 356, 602, 605, 716, 941, 944
Tsp45I GTSAC 1 cut(s) 515
TspDTI ATGAA 2 cut(s) 17, 668
TspGWI ACGGA 1 cut(s) 611
VpaK11BI GGWCC 7 cut(s) 181, 267, 275, 281, 746, 836, 889
XapI RAATTY 1 cut(s) 727
XceI RCATGY 2 cut(s) 196, 376
XmaJI CCTAGG 1 cut(s) 142
XmiI GTMKAC 1 cut(s) 790
XspI CTAG 4 cut(s) 104, 143, 840, 926
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.