pycom11g13180

30S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0007843
Physical Location & Seq
Forward (+)
12375717 .. 12376006
290 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 222 bp
ATGAAGACGGTGGTAGGGATGGTGGTTTCCAATAAGATGCAGAAGTCGGTGGTGGTGGCAGTGGACAGGCTGTTCCATCACAAGCTCTACAACCGATACGTGAAGAGGACCTCCAAGTTCATGGCCCATGACGAGCAGAATCATTGCAACATCGGTGACCGAGTATGTTCGATTGGATCCATCGAGGCCTCTGAGCAAGCGCAAGCATTGGGTTGTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S17

Protein Analysis

74

Amino Acids

8.15

Weight (kDa)

9.22

Isoelectric Point (pI)

36.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S17 PF00366 6 - 55 1.2e-22 Ribosomal protein S17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 171, 184
AloI GAACNNNNNNTCC 2 cut(s) 56, 88
AluBI AGCT 1 cut(s) 85
AluI AGCT 1 cut(s) 85
AlwI GGATC 2 cut(s) 171, 184
AoxI GGCC 2 cut(s) 123, 186
AspLEI GCGC 1 cut(s) 202
AspS9I GGNCC 2 cut(s) 108, 124
AsuHPI GGTGA 1 cut(s) 167
AvaII GGWCC 1 cut(s) 108
BamHI GGATCC 1 cut(s) 176
BbsI GAAGAC 1 cut(s) 11
BccI CCATC 3 cut(s) 13, 84, 188
Bme18I GGWCC 1 cut(s) 108
BmgT120I GGNCC 2 cut(s) 108, 124
BmiI GGNNCC 1 cut(s) 178
BmsI GCATC 1 cut(s) 27
BpiI GAAGAC 1 cut(s) 11
BsaAI YACGTR 1 cut(s) 100
Bse3DI GCAATG 1 cut(s) 142
BseGI GGATG 1 cut(s) 24
BseMI GCAATG 1 cut(s) 142
BseMII CTCAG 1 cut(s) 183
BshFI GGCC 2 cut(s) 125, 188
BsnI GGCC 2 cut(s) 125, 188
Bsp143I GATC 1 cut(s) 176
BspANI GGCC 2 cut(s) 125, 188
BspCNI CTCAG 1 cut(s) 184
BspLI GGNNCC 1 cut(s) 178
BspPI GGATC 2 cut(s) 171, 184
BsrDI GCAATG 1 cut(s) 142
BssMI GATC 1 cut(s) 176
Bst4CI ACNGT 1 cut(s) 10
Bst6I CTCTTC 1 cut(s) 98
BstBAI YACGTR 1 cut(s) 100
BstC8I GCNNGC 2 cut(s) 198, 204
BstDEI CTNAG 1 cut(s) 192
BstEII GGTNACC 1 cut(s) 155
BstF5I GGATG 1 cut(s) 24
BstHHI GCGC 1 cut(s) 202
BstKTI GATC 1 cut(s) 179
BstMBI GATC 1 cut(s) 176
BstPI GGTNACC 1 cut(s) 155
BstV2I GAAGAC 1 cut(s) 11
BstX2I RGATCY 1 cut(s) 176
BstXI CCANNNNNNTGG 1 cut(s) 121
BstYI RGATCY 1 cut(s) 176
BsuRI GGCC 2 cut(s) 125, 188
BtsCI GGATG 1 cut(s) 24
BtsI GCAGTG 1 cut(s) 66
BtsIMutI CAGTG 1 cut(s) 66
Cac8I GCNNGC 2 cut(s) 198, 204
CfoI GCGC 1 cut(s) 202
Cfr13I GGNCC 2 cut(s) 108, 124
CviAII CATG 2 cut(s) 121, 128
CviJI RGCY 5 cut(s) 70, 85, 125, 188, 219
CviKI_1 RGCY 5 cut(s) 70, 85, 125, 188, 219
DdeI CTNAG 1 cut(s) 192
DpnI GATC 1 cut(s) 178
DpnII GATC 1 cut(s) 176
Eam1104I CTCTTC 1 cut(s) 98
EarI CTCTTC 1 cut(s) 98
Eco147I AGGCCT 1 cut(s) 188
Eco47I GGWCC 1 cut(s) 108
Eco91I GGTNACC 1 cut(s) 155
EcoO109I RGGNCCY 1 cut(s) 108
EcoO65I GGTNACC 1 cut(s) 155
FaeI CATG 2 cut(s) 124, 131
FaiI YATR 3 cut(s) 122, 129, 166
FatI CATG 2 cut(s) 120, 127
FokI GGATG 1 cut(s) 31
GlaI GCGC 1 cut(s) 201
HaeIII GGCC 2 cut(s) 125, 188
HhaI GCGC 1 cut(s) 202
Hin1II CATG 2 cut(s) 124, 131
Hin6I GCGC 1 cut(s) 200
HinP1I GCGC 1 cut(s) 200
HinfI GANTC 1 cut(s) 139
HphI GGTGA 1 cut(s) 167
Hpy166II GTNNAC 1 cut(s) 64
Hpy188I TCNGA 1 cut(s) 193
Hpy8I GTNNAC 1 cut(s) 64
HpyCH4III ACNGT 1 cut(s) 10
HpyCH4IV ACGT 1 cut(s) 99
HpyCH4V TGCA 2 cut(s) 40, 147
HpyF3I CTNAG 1 cut(s) 192
HpySE526I ACGT 1 cut(s) 99
Hsp92II CATG 2 cut(s) 124, 131
HspAI GCGC 1 cut(s) 200
Kzo9I GATC 1 cut(s) 176
LpnPI CCDG 1 cut(s) 52
LweI GCATC 1 cut(s) 27
MaeII ACGT 1 cut(s) 99
MaeIII GTNAC 1 cut(s) 155
MalI GATC 1 cut(s) 178
MboI GATC 1 cut(s) 176
MboII GAAGA 2 cut(s) 16, 115
MflI RGATCY 1 cut(s) 176
MnlI CCTC 4 cut(s) 99, 121, 178, 199
NdeII GATC 1 cut(s) 176
NlaIII CATG 2 cut(s) 124, 131
NlaIV GGNNCC 1 cut(s) 178
NmuCI GTSAC 1 cut(s) 155
PceI AGGCCT 1 cut(s) 188
PfeI GAWTC 1 cut(s) 139
Ppu21I YACGTR 1 cut(s) 100
PpuMI RGGWCCY 1 cut(s) 108
Psp5II RGGWCCY 1 cut(s) 108
PspEI GGTNACC 1 cut(s) 155
PspN4I GGNNCC 1 cut(s) 178
PspPI GGNCC 2 cut(s) 108, 124
PspPPI RGGWCCY 1 cut(s) 108
PsuI RGATCY 1 cut(s) 176
Sau3AI GATC 1 cut(s) 176
Sau96I GGNCC 2 cut(s) 108, 124
SetI ASST 3 cut(s) 87, 102, 113
SfaNI GCATC 1 cut(s) 27
SinI GGWCC 1 cut(s) 108
SseBI AGGCCT 1 cut(s) 188
StuI AGGCCT 1 cut(s) 188
TaaI ACNGT 1 cut(s) 10
TaiI ACGT 1 cut(s) 102
TaqI TCGA 2 cut(s) 170, 183
TaqII GACCGA 1 cut(s) 174
TfiI GAWTC 1 cut(s) 139
TscAI CASTG 1 cut(s) 66
TseFI GTSAC 1 cut(s) 155
Tsp45I GTSAC 1 cut(s) 155
TspDTI ATGAA 2 cut(s) 17, 109
TspRI CASTG 1 cut(s) 66
VpaK11BI GGWCC 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.