Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0011190

Physical Location & Seq

Genomic Coordinates Reverse (-)

15595636 .. 15598197

Gene Structure 2562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGCCACACTTTCCTGCTATTCCCTCCACCCTCTTTCCTCTTCTTCTTCTTCTTCTTTTCCTTCAACATCTCAATCTTTTCCACACCAACCTCAAACAAAACCCGAAACCCCTCCTCCGCTCATCCGCTGCTCCGCCACCGGCATTGCCACTATTGCCGCCCCCGGACGTGAAATCATAATTCAGCCAACCACTCGGCTGTTGGTCCAACCTATTCTCCTATTTGCTGGCTTCGACAGACCCTTGGACACCCAAACTTTTCTTGCCACTATCAGTGTCTTGGCCGCCATTGCTCTCTCCCTCTTTCTCGGCCTTAAGGGTGACCCTGTGCCTTGTGAGAGATGTGCTGGCAATGGTGGTACGAAATGTGTCTTCTGCAACAATGGCAAAATGAAGCTAGAGACAGGCTTGGTTGACTGCAAGGTTTGCAAGGGTGCAGGATTGGTACTTTGCAAGAAATGTGCAGGTTCTGGCTACTCTCGACGGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

164

Amino Acids

17.13

Weight (kDa)

9.12

Isoelectric Point (pI)

38.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44020
fragaria_vesca	FvH4_3g26920
malus_domestica	MD03G1161000.v1.1 MD11G1177000.v1.1
prunus_persica	Prupe.6G149200_v2.0.a1 Prupe.6G149200_v2.0.a1
pyrus_communis	pycom03g11330 pycom11g15100
rosa_chinensis	RchiOBHm_Chr5g0049271
rosa_laevigata	RLG00000034609
rosa_multiflora	Rmu_sc0005358.1_g000011 Rmu_sc0009674.1_g000002
rosa_roxburghii	Rroxscaffold_1G00032390
rosa_rugosa	Rorug05G0246900 Rorug05G0247000 Rorug05G0247100
rosa_samantha	Rh5BG334800 Rh5DG346900 Rh7BG059700
rosa_wichuraiana	Rw5G030610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	455
AccBSI	CCGCTC	1 cut(s)	121
AciI	CCGC	5 cut(s)	119, 127, 135, 159, 285
AcoI	YGGCCR	2 cut(s)	3, 282
AfaI	GTAC	2 cut(s)	361, 447
AflII	CTTAAG	1 cut(s)	314
AgsI	TTSAA	1 cut(s)	66
AjiI	CACGTC	1 cut(s)	170
AluBI	AGCT	1 cut(s)	397
AluI	AGCT	1 cut(s)	397
Alw26I	GTCTC	1 cut(s)	395
AlwNI	CAGNNNCTG	1 cut(s)	470
AoxI	GGCC	3 cut(s)	3, 282, 310
ApeKI	GCWGC	1 cut(s)	129
AspS9I	GGNCC	1 cut(s)	205
AsuC2I	CCSGG	1 cut(s)	165
AsuHPI	GGTGA	1 cut(s)	332
AvaII	GGWCC	1 cut(s)	205
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	364
BbvI	GCAGC	1 cut(s)	116
BcnI	CCSGG	1 cut(s)	165
BcoDI	GTCTC	1 cut(s)	395
BfaI	CTAG	1 cut(s)	398
BfrI	CTTAAG	1 cut(s)	314
BfuAI	ACCTGC	1 cut(s)	455
BisI	GCNGC	3 cut(s)	130, 159, 285
BlsI	GCNGC	3 cut(s)	131, 160, 286
Bme1390I	CCNGG	1 cut(s)	165
Bme18I	GGWCC	1 cut(s)	205
BmgBI	CACGTC	1 cut(s)	170
BmgT120I	GGNCC	1 cut(s)	205
BmrFI	CCNGG	1 cut(s)	165
BpiI	GAAGAC	1 cut(s)	364
BpuMI	CCSGG	1 cut(s)	165
BsaJI	CCNNGG	2 cut(s)	163, 243
BsaXI	ACNNNNNCTCC	4 cut(s)	100, 130, 201, 231
Bse118I	RCCGGY	1 cut(s)	140
Bse3DI	GCAATG	3 cut(s)	144, 288, 358
BseDI	CCNNGG	2 cut(s)	163, 243
BseGI	GGATG	1 cut(s)	123
BseMI	GCAATG	3 cut(s)	144, 288, 358
BseRI	GAGGAG	1 cut(s)	105
BseXI	GCAGC	1 cut(s)	116
BsgI	GTGCAG	2 cut(s)	456, 483
BshFI	GGCC	3 cut(s)	5, 284, 312
BsiSI	CCGG	2 cut(s)	141, 165
BsmAI	GTCTC	1 cut(s)	395
BsnI	GGCC	3 cut(s)	5, 284, 312
BspACI	CCGC	5 cut(s)	119, 127, 135, 159, 285
BspANI	GGCC	3 cut(s)	5, 284, 312
BspMI	ACCTGC	1 cut(s)	455
BspTI	CTTAAG	1 cut(s)	314
BsrBI	CCGCTC	1 cut(s)	121
BsrDI	GCAATG	3 cut(s)	144, 288, 358
BsrFI	RCCGGY	1 cut(s)	140
BssAI	RCCGGY	1 cut(s)	140
BssECI	CCNNGG	2 cut(s)	163, 243
BssT1I	CCWWGG	1 cut(s)	243
Bst6I	CTCTTC	1 cut(s)	46
BstAFI	CTTAAG	1 cut(s)	314
BstAPI	GCANNNNNTGC	1 cut(s)	426
BstC8I	GCNNGC	2 cut(s)	229, 349
BstEII	GGTNACC	1 cut(s)	320
BstF5I	GGATG	1 cut(s)	123
BstMAI	GTCTC	1 cut(s)	395
BstMWI	GCNNNNNNNGC	4 cut(s)	155, 290, 384, 426
BstPI	GGTNACC	1 cut(s)	320
BstSCI	CCNGG	1 cut(s)	163
BstV1I	GCAGC	1 cut(s)	116
BstV2I	GAAGAC	1 cut(s)	364
BsuRI	GGCC	3 cut(s)	5, 284, 312
BtrI	CACGTC	1 cut(s)	170
BtsCI	GGATG	1 cut(s)	123
BtsIMutI	CAGTG	1 cut(s)	280
BveI	ACCTGC	1 cut(s)	455
Cac8I	GCNNGC	2 cut(s)	229, 349
CaiI	CAGNNNCTG	1 cut(s)	470
Cfr10I	RCCGGY	1 cut(s)	140
Cfr13I	GGNCC	1 cut(s)	205
Csp6I	GTAC	2 cut(s)	360, 446
CspCI	CAANNNNNGTGG	2 cut(s)	127, 162
CviQI	GTAC	2 cut(s)	360, 446
EaeI	YGGCCR	2 cut(s)	3, 282
Eam1104I	CTCTTC	1 cut(s)	46
EarI	CTCTTC	1 cut(s)	46
EciI	GGCGGA	1 cut(s)	124
Eco130I	CCWWGG	1 cut(s)	243
Eco47I	GGWCC	1 cut(s)	205
Eco91I	GGTNACC	1 cut(s)	320
EcoO65I	GGTNACC	1 cut(s)	320
EcoT14I	CCWWGG	1 cut(s)	243
ErhI	CCWWGG	1 cut(s)	243
FaiI	YATR	2 cut(s)	179, 490
Fnu4HI	GCNGC	3 cut(s)	130, 159, 285
FokI	GGATG	1 cut(s)	110
Fsp4HI	GCNGC	3 cut(s)	130, 159, 285
FspBI	CTAG	1 cut(s)	398
GluI	GCNGC	3 cut(s)	130, 159, 285
HaeIII	GGCC	3 cut(s)	5, 284, 312
HapII	CCGG	2 cut(s)	141, 165
HincII	GTYRAC	1 cut(s)	415
HindII	GTYRAC	1 cut(s)	415
HpaII	CCGG	2 cut(s)	141, 165
HphI	GGTGA	1 cut(s)	332
Hpy166II	GTNNAC	1 cut(s)	415
Hpy188III	TCNNGA	1 cut(s)	480
Hpy8I	GTNNAC	1 cut(s)	415
Hpy99I	CGWCG	1 cut(s)	486
HpyAV	CCTTC	1 cut(s)	72
HpyCH4IV	ACGT	1 cut(s)	169
HpyCH4V	TGCA	6 cut(s)	378, 420, 429, 437, 453, 464
HpyF10VI	GCNNNNNNNGC	4 cut(s)	155, 290, 384, 426
HpySE526I	ACGT	1 cut(s)	169
LmnI	GCTCC	1 cut(s)	137
Lsp1109I	GCAGC	1 cut(s)	116
MaeI	CTAG	1 cut(s)	398
MaeII	ACGT	1 cut(s)	169
MaeIII	GTNAC	1 cut(s)	320
MbiI	CCGCTC	1 cut(s)	121
MboII	GAAGA	6 cut(s)	33, 36, 39, 42, 45, 364
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	180
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	232
MnlI	CCTC	7 cut(s)	35, 42, 49, 102, 123, 126, 311
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	315
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	129
MspCI	CTTAAG	1 cut(s)	314
MspI	CCGG	2 cut(s)	141, 165
MspR9I	CCNGG	1 cut(s)	165
MwoI	GCNNNNNNNGC	4 cut(s)	155, 290, 384, 426
NciI	CCSGG	1 cut(s)	165
NmeAIII	GCCGAG	2 cut(s)	175, 288
NmuCI	GTSAC	1 cut(s)	320
PkrI	GCNGC	3 cut(s)	131, 160, 286
PspEI	GGTNACC	1 cut(s)	320
PspPI	GGNCC	1 cut(s)	205
PstNI	CAGNNNCTG	1 cut(s)	470
RsaI	GTAC	2 cut(s)	361, 447
RsaNI	GTAC	2 cut(s)	360, 446
SaqAI	TTAA	1 cut(s)	315
SatI	GCNGC	3 cut(s)	130, 159, 285
Sau96I	GGNCC	1 cut(s)	205
ScrFI	CCNGG	1 cut(s)	165
SetI	ASST	6 cut(s)	94, 172, 214, 399, 426, 469
SinI	GGWCC	1 cut(s)	205
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
Sse9I	AATT	1 cut(s)	180
SsiI	CCGC	5 cut(s)	119, 127, 135, 159, 285
SspMI	CTAG	1 cut(s)	398
StyD4I	CCNGG	1 cut(s)	163
StyI	CCWWGG	1 cut(s)	243
TaiI	ACGT	1 cut(s)	172
TaqI	TCGA	2 cut(s)	234, 481
TasI	AATT	1 cut(s)	180
TauI	GCSGC	2 cut(s)	161, 287
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TscAI	CASTG	1 cut(s)	280
TseFI	GTSAC	1 cut(s)	320
TseI	GCWGC	1 cut(s)	129
Tsp45I	GTSAC	1 cut(s)	320
TspDTI	ATGAA	1 cut(s)	407
TspRI	CASTG	1 cut(s)	280
Vha464I	CTTAAG	1 cut(s)	314
VpaK11BI	GGWCC	1 cut(s)	205
XcmI	CCANNNNNNNNNTGG	1 cut(s)	199
XspI	CTAG	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.